RNA–Protein interactions for RNA: ENST00000482065.1

LIMS3-204, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best)

Gene LIMS3, Length 690 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-204ENST00000482065 ZNF79Q15937 498 aa10.97□□□□□ -0.65
LIMS3-204ENST00000482065 NMSQ5H8A3 153 aa10.97□□□□□ -0.65
LIMS3-204ENST00000482065 TMED4Q7Z7H5 227 aa10.97□□□□□ -0.65
LIMS3-204ENST00000482065 LYG2Q86SG7 212 aa10.97□□□□□ -0.65
LIMS3-204ENST00000482065 RNASEH2CQ8TDP1 164 aaKnown RBP10.97□□□□□ -0.65
LIMS3-204ENST00000482065 METTL26Q96S19 204 aa10.97□□□□□ -0.65
LIMS3-204ENST00000482065 TMEM231Q9H6L2 316 aa10.97□□□□□ -0.65
LIMS3-204ENST00000482065 SHPKQ9UHJ6 478 aa10.97□□□□□ -0.65
LIMS3-204ENST00000482065 HYDINQ4G0P3 5121 aa10.96□□□□□ -0.65
LIMS3-204ENST00000482065 TRAV30A0A087WSZ9 112 aa10.96□□□□□ -0.65
LIMS3-204ENST00000482065 SCGB2A1O75556 95 aa10.96□□□□□ -0.65
LIMS3-204ENST00000482065 SLC25A4P12235 298 aa10.96□□□□□ -0.65
LIMS3-204ENST00000482065 CRYBB3P26998 211 aa10.96□□□□□ -0.65
LIMS3-204ENST00000482065 FAUP35544 74 aaKnown RBP10.96□□□□□ -0.65
LIMS3-204ENST00000482065 P2RY1P47900 373 aa10.96□□□□□ -0.65
LIMS3-204ENST00000482065 CCR6P51684 374 aa10.96□□□□□ -0.65
LIMS3-204ENST00000482065 DEFB131AP59861 70 aa10.96□□□□□ -0.65
LIMS3-204ENST00000482065 TNFRSF9Q07011 255 aa10.96□□□□□ -0.65
LIMS3-204ENST00000482065 SMCO1Q147U7 214 aa10.96□□□□□ -0.65
LIMS3-204ENST00000482065 RBMS2Q15434 407 aaKnown RBP10.96□□□□□ -0.65
LIMS3-204ENST00000482065 LEMD1Q68G75 181 aa10.96□□□□□ -0.65
LIMS3-204ENST00000482065 LGI3Q8N145 548 aa10.96□□□□□ -0.65
LIMS3-204ENST00000482065 TOMM5Q8N4H5 51 aa10.96□□□□□ -0.65
LIMS3-204ENST00000482065 OR1S2Q8NGQ3 325 aa10.96□□□□□ -0.65
LIMS3-204ENST00000482065 RBM38Q9H0Z9 239 aaKnown RBP10.96□□□□□ -0.65
LIMS3-204ENST00000482065 CSTL1Q9H114 145 aa10.96□□□□□ -0.65
LIMS3-204ENST00000482065 RABAC1Q9UI14 185 aa10.96□□□□□ -0.65
LIMS3-204ENST00000482065 A0A1W2PS18 150 aa10.95□□□□□ -0.66
LIMS3-204ENST00000482065 JTBO76095 146 aa10.95□□□□□ -0.66
LIMS3-204ENST00000482065 ANXA3P12429 323 aa10.95□□□□□ -0.66
LIMS3-204ENST00000482065 OR10J1P30954 320 aa10.95□□□□□ -0.66
LIMS3-204ENST00000482065 STXBP6Q8NFX7 210 aa10.95□□□□□ -0.66
LIMS3-204ENST00000482065 NPIPB3Q92617 1050 aa10.95□□□□□ -0.66
LIMS3-204ENST00000482065 ACY3Q96HD9 319 aa10.95□□□□□ -0.66
LIMS3-204ENST00000482065 RBKSQ9H477 322 aa10.95□□□□□ -0.66
LIMS3-204ENST00000482065 HSPB7Q9UBY9 170 aa10.95□□□□□ -0.66
LIMS3-204ENST00000482065 TRAV2A0A0B4J234 112 aa10.94□□□□□ -0.66
LIMS3-204ENST00000482065 CXorf65A6NEN9 183 aa10.94□□□□□ -0.66
LIMS3-204ENST00000482065 MPTX1A8MV57 137 aa10.94□□□□□ -0.66
LIMS3-204ENST00000482065 IFNA10P01566 189 aa10.94□□□□□ -0.66
LIMS3-204ENST00000482065 S100A5P33763 92 aa10.94□□□□□ -0.66
LIMS3-204ENST00000482065 AP3S2P59780 193 aa10.94□□□□□ -0.66
LIMS3-204ENST00000482065 SRPXP78539 464 aa10.94□□□□□ -0.66
LIMS3-204ENST00000482065 DTD1Q8TEA8 209 aa10.94□□□□□ -0.66
LIMS3-204ENST00000482065 Q8WTZ3 238 aa10.94□□□□□ -0.66
LIMS3-204ENST00000482065 CACFD1Q9UGQ2 172 aa10.94□□□□□ -0.66
LIMS3-204ENST00000482065 U3KQE9 123 aa10.94□□□□□ -0.66
LIMS3-204ENST00000482065 K7EQG2 157 aa10.93□□□□□ -0.66
LIMS3-204ENST00000482065 YPEL3P61236 119 aaPredicted RBP10.93□□□□□ -0.66
LIMS3-204ENST00000482065 USF2Q15853 346 aaPredicted RBP10.93□□□□□ -0.66
LIMS3-204ENST00000482065 ETFRF1Q6IPR1 90 aa10.93□□□□□ -0.66
LIMS3-204ENST00000482065 CCDC190Q86UF4 302 aa10.93□□□□□ -0.66
LIMS3-204ENST00000482065 NOXA1Q86UR1 476 aa10.93□□□□□ -0.66
LIMS3-204ENST00000482065 OR1S1Q8NH92 325 aa10.93□□□□□ -0.66
LIMS3-204ENST00000482065 NARS2Q96I59 477 aaKnown RBP10.93□□□□□ -0.66
LIMS3-204ENST00000482065 U3KQ87 197 aa10.93□□□□□ -0.66
LIMS3-204ENST00000482065 AGRNO00468 2067 aa10.93□□□□□ -0.66
LIMS3-204ENST00000482065 CA1P00915 261 aaPredicted RBP10.92□□□□□ -0.66
LIMS3-204ENST00000482065 IL4P05112 153 aa10.92□□□□□ -0.66
LIMS3-204ENST00000482065 HNRNPCP07910 306 aaKnown RBP eCLIP10.92□□□□□ -0.66
LIMS3-204ENST00000482065 ZNF688P0C7X2 276 aa10.92□□□□□ -0.66
LIMS3-204ENST00000482065 VAMP1P23763 118 aa10.92□□□□□ -0.66
LIMS3-204ENST00000482065 TMEM128Q5BJH2 165 aa10.92□□□□□ -0.66
LIMS3-204ENST00000482065 GRAMD2BQ96HH9 432 aa10.92□□□□□ -0.66
LIMS3-204ENST00000482065 PITX3O75364 302 aa10.91□□□□□ -0.66
LIMS3-204ENST00000482065 TOMM40O96008 361 aa10.91□□□□□ -0.66
LIMS3-204ENST00000482065 IFNA4P05014 189 aa10.91□□□□□ -0.66
LIMS3-204ENST00000482065 PPP1R1AQ13522 171 aa10.91□□□□□ -0.66
LIMS3-204ENST00000482065 C16orf54Q6UWD8 224 aa10.91□□□□□ -0.66
LIMS3-204ENST00000482065 STHQ8IWL8 128 aa10.91□□□□□ -0.66
LIMS3-204ENST00000482065 DCANP1Q8TF63 244 aa10.91□□□□□ -0.66
LIMS3-204ENST00000482065 GLMPQ8WWB7 406 aa10.91□□□□□ -0.66
LIMS3-204ENST00000482065 RARRES2Q99969 163 aa10.91□□□□□ -0.66
LIMS3-204ENST00000482065 SRRQ9GZT4 340 aa10.91□□□□□ -0.66
LIMS3-204ENST00000482065 DUXBA0A1W2PPF3 345 aa10.9□□□□□ -0.66
LIMS3-204ENST00000482065 KNCNA6PVL3 124 aa10.9□□□□□ -0.66
LIMS3-204ENST00000482065 SFT2D2O95562 160 aa10.9□□□□□ -0.66
LIMS3-204ENST00000482065 RD3LP0DJH9 198 aa10.9□□□□□ -0.66
LIMS3-204ENST00000482065 IAPPP10997 89 aa10.9□□□□□ -0.66
LIMS3-204ENST00000482065 PSG1P11464 419 aa10.9□□□□□ -0.66
LIMS3-204ENST00000482065 OR11H2Q8NH07 326 aa10.9□□□□□ -0.66
LIMS3-204ENST00000482065 GATAD1Q8WUU5 269 aa10.9□□□□□ -0.66
LIMS3-204ENST00000482065 SLC25A21Q9BQT8 299 aaPredicted RBP10.9□□□□□ -0.66
LIMS3-204ENST00000482065 DHRS2Q13268 280 aa10.89□□□□□ -0.67
LIMS3-204ENST00000482065 SPANXN2Q5MJ10 180 aa10.89□□□□□ -0.67
LIMS3-204ENST00000482065 CENPSQ8N2Z9 138 aa10.89□□□□□ -0.67
LIMS3-204ENST00000482065 TMEM217Q8N7C4 229 aa10.89□□□□□ -0.67
LIMS3-204ENST00000482065 LRTM2Q8N967 370 aa10.89□□□□□ -0.67
LIMS3-204ENST00000482065 OR51G1Q8NGK1 321 aa10.89□□□□□ -0.67
LIMS3-204ENST00000482065 DEDD2Q8WXF8 326 aa10.89□□□□□ -0.67
LIMS3-204ENST00000482065 IGKV1D-37A0A075B6S9 117 aa10.88□□□□□ -0.67
LIMS3-204ENST00000482065 PIGBOS1A0A0B4J2F0 54 aa10.88□□□□□ -0.67
LIMS3-204ENST00000482065 NUPR2A6NF83 97 aa10.88□□□□□ -0.67
LIMS3-204ENST00000482065 HELTA6NFD8 242 aa10.88□□□□□ -0.67
LIMS3-204ENST00000482065 ZNF701M0R085 212 aaPredicted RBP10.88□□□□□ -0.67
LIMS3-204ENST00000482065 HOXB5P09067 269 aa10.88□□□□□ -0.67
LIMS3-204ENST00000482065 GIG44P09565 113 aaPredicted RBP10.88□□□□□ -0.67
LIMS3-204ENST00000482065 ATF4P18848 351 aaPredicted RBP10.88□□□□□ -0.67
LIMS3-204ENST00000482065 EIF2B2P49770 351 aaKnown RBP10.88□□□□□ -0.67
LIMS3-204ENST00000482065 ZNF90Q03938 601 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms