RNA–Protein interactions for RNA: ENST00000478916.5

SYNE1-224, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 7,780 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-224ENST00000478916 TP53BP1Q12888 1972 aaPredicted RBP7.37□□□□□ -1.23
SYNE1-224ENST00000478916 IGHV3-49A0A0A0MS15 119 aa7.37□□□□□ -1.23
SYNE1-224ENST00000478916 C21orf62Q9NYP8 219 aa7.37□□□□□ -1.23
SYNE1-224ENST00000478916 DOCK9Q9BZ29 2069 aa7.37□□□□□ -1.23
SYNE1-224ENST00000478916 PSME4Q14997 1843 aa7.37□□□□□ -1.23
SYNE1-224ENST00000478916 F8VVB4 439 aa7.37□□□□□ -1.23
SYNE1-224ENST00000478916 F8VWA3 439 aa7.37□□□□□ -1.23
SYNE1-224ENST00000478916 RHOGP84095 191 aa7.37□□□□□ -1.23
SYNE1-224ENST00000478916 CD300EQ496F6 205 aaPredicted RBP7.37□□□□□ -1.23
SYNE1-224ENST00000478916 ADAMTSL5Q6ZMM2 481 aa7.37□□□□□ -1.23
SYNE1-224ENST00000478916 GTSCR1Q86UQ5 136 aa7.37□□□□□ -1.23
SYNE1-224ENST00000478916 C9orf106Q8NAJ2 232 aa7.37□□□□□ -1.23
SYNE1-224ENST00000478916 PLEKHB2Q96CS7 222 aa7.37□□□□□ -1.23
SYNE1-224ENST00000478916 LOC102723996A0A087X1L8 192 aa7.37□□□□□ -1.23
SYNE1-224ENST00000478916 ZIC4Q8N9L1 334 aa7.37□□□□□ -1.23
SYNE1-224ENST00000478916 TSKUQ8WUA8 353 aa7.37□□□□□ -1.23
SYNE1-224ENST00000478916 C18orf12Q96KH6 178 aa7.37□□□□□ -1.23
SYNE1-224ENST00000478916 NAA38Q9BRA0 125 aaKnown RBP7.37□□□□□ -1.23
SYNE1-224ENST00000478916 JPT2Q9H910 190 aa7.37□□□□□ -1.23
SYNE1-224ENST00000478916 ARID2Q68CP9 1835 aa7.37□□□□□ -1.23
SYNE1-224ENST00000478916 C17orf100A8MU93 164 aa7.37□□□□□ -1.23
SYNE1-224ENST00000478916 GNG5P63218 68 aa7.37□□□□□ -1.23
SYNE1-224ENST00000478916 ZFP36L1Q07352 338 aaKnown RBP7.37□□□□□ -1.23
SYNE1-224ENST00000478916 RASL11AQ6T310 242 aa7.37□□□□□ -1.23
SYNE1-224ENST00000478916 TRBV24-1A0A075B6N3 115 aa7.37□□□□□ -1.23
SYNE1-224ENST00000478916 IGHV3-64A0A075B6Q5 118 aa7.37□□□□□ -1.23
SYNE1-224ENST00000478916 MLNRO43193 412 aa7.37□□□□□ -1.23
SYNE1-224ENST00000478916 CD59P13987 128 aa7.37□□□□□ -1.23
SYNE1-224ENST00000478916 PPP1R27Q86WC6 154 aa7.37□□□□□ -1.23
SYNE1-224ENST00000478916 TDRD6O60522 2096 aaKnown RBP7.37□□□□□ -1.23
SYNE1-224ENST00000478916 PATJQ8NI35 1801 aa7.37□□□□□ -1.23
SYNE1-224ENST00000478916 ADARB2-AS1A8MUL3 147 aa7.37□□□□□ -1.23
SYNE1-224ENST00000478916 DSCR9P59020 149 aa7.37□□□□□ -1.23
SYNE1-224ENST00000478916 KIR3DS1Q14943 382 aa7.37□□□□□ -1.23
SYNE1-224ENST00000478916 PEMTQ9UBM1 199 aa7.37□□□□□ -1.23
SYNE1-224ENST00000478916 A0A087X0K7 114 aa7.36□□□□□ -1.23
SYNE1-224ENST00000478916 EFEMP2O95967 443 aa7.36□□□□□ -1.23
SYNE1-224ENST00000478916 IGKV1D-33P01593 117 aa7.36□□□□□ -1.23
SYNE1-224ENST00000478916 IGKV1-33P01594 117 aa7.36□□□□□ -1.23
SYNE1-224ENST00000478916 GUSBP1Q15486 140 aa7.36□□□□□ -1.23
SYNE1-224ENST00000478916 CT83Q5H943 113 aa7.36□□□□□ -1.23
SYNE1-224ENST00000478916 FAM90A2PQ658T7 463 aa7.36□□□□□ -1.23
SYNE1-224ENST00000478916 TMEM144Q7Z5S9 345 aa7.36□□□□□ -1.23
SYNE1-224ENST00000478916 OCC1Q8TAD7 63 aa7.36□□□□□ -1.23
SYNE1-224ENST00000478916 SLC50A1Q9BRV3 221 aa7.36□□□□□ -1.23
SYNE1-224ENST00000478916 NEUROG3Q9Y4Z2 214 aa7.36□□□□□ -1.23
SYNE1-224ENST00000478916 CABIN1Q9Y6J0 2220 aa7.36□□□□□ -1.23
SYNE1-224ENST00000478916 WFDC6Q9BQY6 131 aa7.36□□□□□ -1.23
SYNE1-224ENST00000478916 RNF126Q9BV68 326 aa7.36□□□□□ -1.23
SYNE1-224ENST00000478916 DOCK3Q8IZD9 2030 aa7.36□□□□□ -1.23
SYNE1-224ENST00000478916 LHX2P50458 406 aa7.36□□□□□ -1.23
SYNE1-224ENST00000478916 LY6DQ14210 128 aa7.36□□□□□ -1.23
SYNE1-224ENST00000478916 C1QTNF5Q9BXJ0 243 aa7.36□□□□□ -1.23
SYNE1-224ENST00000478916 RALGAPA2Q2PPJ7 1873 aa7.36□□□□□ -1.23
SYNE1-224ENST00000478916 CRYBA2P53672 197 aa7.36□□□□□ -1.23
SYNE1-224ENST00000478916 LINC01590Q5TEZ4 76 aa7.36□□□□□ -1.23
SYNE1-224ENST00000478916 GGTLC1Q9BX51 225 aa7.36□□□□□ -1.23
SYNE1-224ENST00000478916 C17orf98A8MV24 154 aa7.36□□□□□ -1.23
SYNE1-224ENST00000478916 IQCF6A8MYZ5 107 aa7.36□□□□□ -1.23
SYNE1-224ENST00000478916 CCL1P22362 96 aa7.36□□□□□ -1.23
SYNE1-224ENST00000478916 CDKN1AP38936 164 aa7.36□□□□□ -1.23
SYNE1-224ENST00000478916 VDAC2P45880 294 aaPredicted RBP7.36□□□□□ -1.23
SYNE1-224ENST00000478916 LINC00312Q9Y6C7 94 aa7.36□□□□□ -1.23
SYNE1-224ENST00000478916 GREB1LQ9C091 1923 aaPredicted RBP7.36□□□□□ -1.23
SYNE1-224ENST00000478916 COLCA2A8K830 154 aa7.35□□□□□ -1.23
SYNE1-224ENST00000478916 ARPC1AQ92747 370 aa7.35□□□□□ -1.23
SYNE1-224ENST00000478916 A0A0U1RRA0 63 aa7.35□□□□□ -1.23
SYNE1-224ENST00000478916 NTN3O00634 580 aaPredicted RBP7.35□□□□□ -1.23
SYNE1-224ENST00000478916 FGF16O43320 207 aa7.35□□□□□ -1.23
SYNE1-224ENST00000478916 NPC2P61916 151 aa7.35□□□□□ -1.23
SYNE1-224ENST00000478916 GAGE2AQ6NT46 116 aa7.35□□□□□ -1.23
SYNE1-224ENST00000478916 TEX38Q6PEX7 206 aa7.35□□□□□ -1.23
SYNE1-224ENST00000478916 METRNQ9UJH8 293 aa7.35□□□□□ -1.23
SYNE1-224ENST00000478916 CD5LO43866 347 aa7.35□□□□□ -1.23
SYNE1-224ENST00000478916 CXCL1P09341 107 aa7.35□□□□□ -1.23
SYNE1-224ENST00000478916 KLF17Q5JT82 389 aaPredicted RBP7.35□□□□□ -1.23
SYNE1-224ENST00000478916 A0A0G2JMZ2 1700 aa7.35□□□□□ -1.23
SYNE1-224ENST00000478916 LRRC37A2A6NM11 1700 aa7.35□□□□□ -1.23
SYNE1-224ENST00000478916 TRIOBPQ9H2D6 2365 aa7.35□□□□□ -1.23
SYNE1-224ENST00000478916 THBDP07204 575 aa7.35□□□□□ -1.23
SYNE1-224ENST00000478916 FBXL15Q9H469 300 aa7.35□□□□□ -1.23
SYNE1-224ENST00000478916 PSG8Q9UQ74 426 aa7.35□□□□□ -1.23
SYNE1-224ENST00000478916 FAM216BQ8N7L0 139 aa7.35□□□□□ -1.23
SYNE1-224ENST00000478916 S4R3C0 116 aa7.35□□□□□ -1.23
SYNE1-224ENST00000478916 CRIM1Q9NZV1 1036 aa7.35□□□□□ -1.23
SYNE1-224ENST00000478916 APC2O95996 2303 aa7.35□□□□□ -1.23
SYNE1-224ENST00000478916 RALGAPA1Q6GYQ0 2036 aa7.35□□□□□ -1.23
SYNE1-224ENST00000478916 hDV102S1A0JD36 115 aa7.34□□□□□ -1.23
SYNE1-224ENST00000478916 PAX4O43316 350 aa7.34□□□□□ -1.23
SYNE1-224ENST00000478916 PROB1E7EW31 1015 aa7.34□□□□□ -1.23
SYNE1-224ENST00000478916 NDUFS6O75380 124 aaKnown RBP7.34□□□□□ -1.23
SYNE1-224ENST00000478916 TRACP01848 142 aa7.34□□□□□ -1.23
SYNE1-224ENST00000478916 CLEC19AQ6UXS0 136 aa7.34□□□□□ -1.23
SYNE1-224ENST00000478916 TMEM190Q8WZ59 177 aa7.34□□□□□ -1.23
SYNE1-224ENST00000478916 TRAV8-3A0A0A6YYJ7 113 aa7.34□□□□□ -1.23
SYNE1-224ENST00000478916 A0A1B0GTI1 187 aa7.34□□□□□ -1.23
SYNE1-224ENST00000478916 ACTL10Q5JWF8 245 aa7.34□□□□□ -1.23
SYNE1-224ENST00000478916 PVRIGQ6DKI7 326 aa7.34□□□□□ -1.23
SYNE1-224ENST00000478916 GATA2P23769 480 aaPredicted RBP7.34□□□□□ -1.23
SYNE1-224ENST00000478916 TIMP3P35625 211 aa7.34□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms