RNA–Protein interactions for RNA: ENST00000476413.1

VPS50-212, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 381 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-212ENST00000476413 TMEM133Q9H2Q1 129 aa1.86□□□□□ -2.11
VPS50-212ENST00000476413 MIXL1Q9H2W2 232 aa1.86□□□□□ -2.11
VPS50-212ENST00000476413 OTOGLQ3ZCN5 2332 aa1.86□□□□□ -2.11
VPS50-212ENST00000476413 MED13Q9UHV7 2174 aa1.86□□□□□ -2.11
VPS50-212ENST00000476413 MED12LQ86YW9 2145 aa1.85□□□□□ -2.11
VPS50-212ENST00000476413 TRAV4A0A0B4J268 109 aa1.85□□□□□ -2.11
VPS50-212ENST00000476413 ASAH2BP0C7U1 165 aa1.85□□□□□ -2.11
VPS50-212ENST00000476413 LYNX1P0DP58 116 aa1.85□□□□□ -2.11
VPS50-212ENST00000476413 YPEL3P61236 119 aaPredicted RBP1.85□□□□□ -2.11
VPS50-212ENST00000476413 MRPS25P82663 173 aaKnown RBP1.85□□□□□ -2.11
VPS50-212ENST00000476413 AQP3Q92482 292 aa1.85□□□□□ -2.11
VPS50-212ENST00000476413 FAM32AQ9Y421 112 aaKnown RBP1.85□□□□□ -2.11
VPS50-212ENST00000476413 SBF1O95248 1867 aa1.84□□□□□ -2.11
VPS50-212ENST00000476413 INTS1Q8N201 2190 aaKnown RBP1.84□□□□□ -2.11
VPS50-212ENST00000476413 CLDN25C9JDP6 229 aa1.84□□□□□ -2.11
VPS50-212ENST00000476413 OR4E1P0C645 316 aa1.84□□□□□ -2.11
VPS50-212ENST00000476413 MIFP14174 115 aa1.84□□□□□ -2.11
VPS50-212ENST00000476413 TAF1AQ15573 450 aaPredicted RBP1.84□□□□□ -2.11
VPS50-212ENST00000476413 OR13D1Q8NGV5 346 aa1.84□□□□□ -2.11
VPS50-212ENST00000476413 C9orf16Q9BUW7 83 aa1.84□□□□□ -2.11
VPS50-212ENST00000476413 REG4Q9BYZ8 158 aa1.84□□□□□ -2.11
VPS50-212ENST00000476413 ENY2Q9NPA8 101 aa1.84□□□□□ -2.11
VPS50-212ENST00000476413 MED9Q9NWA0 146 aa1.84□□□□□ -2.11
VPS50-212ENST00000476413 A0A087X0T9 212 aa1.83□□□□□ -2.12
VPS50-212ENST00000476413 TRAV1-1A0A0B4J248 108 aa1.83□□□□□ -2.12
VPS50-212ENST00000476413 IGKV3D-7A0A0C4DH55 119 aa1.83□□□□□ -2.12
VPS50-212ENST00000476413 IGKV3OR2-268A0A0C4DH90 116 aa1.83□□□□□ -2.12
VPS50-212ENST00000476413 C1orf196B1AJZ1 125 aa1.83□□□□□ -2.12
VPS50-212ENST00000476413 OR2B3O76000 313 aa1.83□□□□□ -2.12
VPS50-212ENST00000476413 GNPDA2Q8TDQ7 276 aa1.83□□□□□ -2.12
VPS50-212ENST00000476413 ARMC1Q9NVT9 282 aa1.83□□□□□ -2.12
VPS50-212ENST00000476413 C2orf70A6NJV1 201 aa1.82□□□□□ -2.12
VPS50-212ENST00000476413 ERP29P30040 261 aaKnown RBP1.82□□□□□ -2.12
VPS50-212ENST00000476413 SURF2Q15527 256 aaPredicted RBP1.82□□□□□ -2.12
VPS50-212ENST00000476413 OR8D4Q8NGM9 314 aa1.82□□□□□ -2.12
VPS50-212ENST00000476413 GPR146Q96CH1 333 aa1.82□□□□□ -2.12
VPS50-212ENST00000476413 PSTPIP2Q9H939 334 aa1.82□□□□□ -2.12
VPS50-212ENST00000476413 EPDR1Q9UM22 224 aa1.82□□□□□ -2.12
VPS50-212ENST00000476413 ARHGEF28Q8N1W1 1705 aaKnown RBP1.82□□□□□ -2.12
VPS50-212ENST00000476413 FUOMA2VDF0 154 aa1.81□□□□□ -2.12
VPS50-212ENST00000476413 RNASE4P34096 147 aaKnown RBP1.81□□□□□ -2.12
VPS50-212ENST00000476413 SSR2P43308 183 aa1.81□□□□□ -2.12
VPS50-212ENST00000476413 ATP5G3P48201 142 aa1.81□□□□□ -2.12
VPS50-212ENST00000476413 ARF6P62330 175 aa1.81□□□□□ -2.12
VPS50-212ENST00000476413 TMED2Q15363 201 aa1.81□□□□□ -2.12
VPS50-212ENST00000476413 SPANXN5Q5MJ07 72 aa1.81□□□□□ -2.12
VPS50-212ENST00000476413 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP1.81□□□□□ -2.12
VPS50-212ENST00000476413 GOLT1AQ6ZVE7 132 aa1.81□□□□□ -2.12
VPS50-212ENST00000476413 LINC00471Q8N535 108 aa1.81□□□□□ -2.12
VPS50-212ENST00000476413 C10orf105Q8TEF2 133 aa1.81□□□□□ -2.12
VPS50-212ENST00000476413 SERPINI1Q99574 410 aa1.81□□□□□ -2.12
VPS50-212ENST00000476413 TAS2R4Q9NYW5 299 aa1.81□□□□□ -2.12
VPS50-212ENST00000476413 OPTCQ9UBM4 332 aa1.81□□□□□ -2.12
VPS50-212ENST00000476413 OBSL1O75147 1896 aa1.8□□□□□ -2.12
VPS50-212ENST00000476413 DENND4CQ5VZ89 1909 aa1.8□□□□□ -2.12
VPS50-212ENST00000476413 TRAV14DV4A0A0A6YYC5 116 aa1.8□□□□□ -2.12
VPS50-212ENST00000476413 CYB5BO43169 146 aa1.8□□□□□ -2.12
VPS50-212ENST00000476413 HCRTO43612 131 aa1.8□□□□□ -2.12
VPS50-212ENST00000476413 C1QBP02746 253 aa1.8□□□□□ -2.12
VPS50-212ENST00000476413 PIGPP57054 158 aa1.8□□□□□ -2.12
VPS50-212ENST00000476413 KRTAP10-4P60372 401 aaPredicted RBP1.8□□□□□ -2.12
VPS50-212ENST00000476413 HSPE1P61604 102 aaKnown RBP1.8□□□□□ -2.12
VPS50-212ENST00000476413 PDE6HQ13956 83 aa1.8□□□□□ -2.12
VPS50-212ENST00000476413 TSNQ15631 228 aaKnown RBP1.8□□□□□ -2.12
VPS50-212ENST00000476413 PHF13Q86YI8 300 aaPredicted RBP1.8□□□□□ -2.12
VPS50-212ENST00000476413 LINC00311Q8N616 119 aa1.8□□□□□ -2.12
VPS50-212ENST00000476413 OR5AC2Q9NZP5 309 aa1.8□□□□□ -2.12
VPS50-212ENST00000476413 ARL5AQ9Y689 179 aa1.8□□□□□ -2.12
VPS50-212ENST00000476413 HELZ2Q9BYK8 2649 aaKnown RBP1.79□□□□□ -2.12
VPS50-212ENST00000476413 TRBV19A0A075B6N1 114 aa1.79□□□□□ -2.12
VPS50-212ENST00000476413 BAALC-AS2P0C853 105 aa1.79□□□□□ -2.12
VPS50-212ENST00000476413 RNASE10Q5GAN6 216 aaKnown RBP1.79□□□□□ -2.12
VPS50-212ENST00000476413 DHRS4L2Q6PKH6 230 aa1.79□□□□□ -2.12
VPS50-212ENST00000476413 PXT1Q8NFP0 134 aa1.79□□□□□ -2.12
VPS50-212ENST00000476413 STAG3L4Q8TBR4 150 aa1.79□□□□□ -2.12
VPS50-212ENST00000476413 HIST1H2BLQ99880 126 aa1.79□□□□□ -2.12
VPS50-212ENST00000476413 ALPK2Q86TB3 2170 aa1.79□□□□□ -2.12
VPS50-212ENST00000476413 ARFGEF3Q5TH69 2177 aa1.78□□□□□ -2.12
VPS50-212ENST00000476413 EXPH5Q8NEV8 1989 aa1.78□□□□□ -2.12
VPS50-212ENST00000476413 TNRC6BQ9UPQ9 1833 aaKnown RBP1.78□□□□□ -2.12
VPS50-212ENST00000476413 TRAV3A0A0B4J244 114 aa1.78□□□□□ -2.12
VPS50-212ENST00000476413 J3QRK9 145 aa1.78□□□□□ -2.12
VPS50-212ENST00000476413 OR1I1O60431 355 aa1.78□□□□□ -2.12
VPS50-212ENST00000476413 LYZL6O75951 148 aa1.78□□□□□ -2.12
VPS50-212ENST00000476413 UBL3O95164 117 aa1.78□□□□□ -2.12
VPS50-212ENST00000476413 ANGP03950 147 aaKnown RBP1.78□□□□□ -2.12
VPS50-212ENST00000476413 MGST1P10620 155 aaKnown RBP1.78□□□□□ -2.12
VPS50-212ENST00000476413 C3orf56Q8N813 242 aa1.78□□□□□ -2.12
VPS50-212ENST00000476413 C12orf29Q8N999 325 aa1.78□□□□□ -2.12
VPS50-212ENST00000476413 OR10J5Q8NHC4 309 aa1.78□□□□□ -2.12
VPS50-212ENST00000476413 CDC26Q8NHZ8 85 aa1.78□□□□□ -2.12
VPS50-212ENST00000476413 PHB2Q99623 299 aa1.78□□□□□ -2.12
VPS50-212ENST00000476413 EML6Q6ZMW3 1958 aa1.78□□□□□ -2.13
VPS50-212ENST00000476413 FMN1Q68DA7 1419 aa1.77□□□□□ -2.13
VPS50-212ENST00000476413 IGKV3-7A0A075B6H7 116 aa1.77□□□□□ -2.13
VPS50-212ENST00000476413 IGKV2-40A0A087WW87 121 aaPredicted RBP1.77□□□□□ -2.13
VPS50-212ENST00000476413 C7orf71A4D174 169 aa1.77□□□□□ -2.13
VPS50-212ENST00000476413 IGKV2D-40P01614 121 aaPredicted RBP1.77□□□□□ -2.13
VPS50-212ENST00000476413 BASP1P80723 227 aaKnown RBP1.77□□□□□ -2.13
VPS50-212ENST00000476413 HACD4Q5VWC8 232 aa1.77□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms