RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 NAT8BQ9UHF3 227 aa11.08□□□□□ -0.64
CCDC88A-211ENST00000471947 AGAP20933 346 aa11.08□□□□□ -0.64
CCDC88A-211ENST00000471947 COL8A1P27658 744 aa11.08□□□□□ -0.64
CCDC88A-211ENST00000471947 MEF2CQ06413 473 aaPredicted RBP11.08□□□□□ -0.64
CCDC88A-211ENST00000471947 C10orf91Q5T1B1 145 aa11.08□□□□□ -0.64
CCDC88A-211ENST00000471947 RUSC1-AS1Q66K80 236 aa11.08□□□□□ -0.64
CCDC88A-211ENST00000471947 CORO2AQ92828 525 aa11.08□□□□□ -0.64
CCDC88A-211ENST00000471947 C19orf84I3L1E1 186 aa11.08□□□□□ -0.64
CCDC88A-211ENST00000471947 RBFOX2O43251 390 aaKnown RBP eCLIP11.08□□□□□ -0.64
CCDC88A-211ENST00000471947 GNG7O60262 68 aa11.08□□□□□ -0.64
CCDC88A-211ENST00000471947 FCGR2BP31994 310 aaPredicted RBP11.08□□□□□ -0.64
CCDC88A-211ENST00000471947 CD69Q07108 199 aa11.08□□□□□ -0.64
CCDC88A-211ENST00000471947 TMEM155Q4W5P6 130 aa11.08□□□□□ -0.64
CCDC88A-211ENST00000471947 CGB3P0DN86 165 aa11.07□□□□□ -0.64
CCDC88A-211ENST00000471947 CGB7P0DN87 165 aa11.07□□□□□ -0.64
CCDC88A-211ENST00000471947 RBM14Q96PK6 669 aaKnown RBP11.07□□□□□ -0.64
CCDC88A-211ENST00000471947 RASL11BQ9BPW5 248 aa11.07□□□□□ -0.64
CCDC88A-211ENST00000471947 TEX36Q5VZQ5 186 aa11.07□□□□□ -0.64
CCDC88A-211ENST00000471947 DPPA3Q6W0C5 159 aa11.07□□□□□ -0.64
CCDC88A-211ENST00000471947 CYP2G1PQ6ZSU1 146 aa11.07□□□□□ -0.64
CCDC88A-211ENST00000471947 OR5B3Q8NH48 314 aa11.07□□□□□ -0.64
CCDC88A-211ENST00000471947 DDB2Q92466 427 aa11.07□□□□□ -0.64
CCDC88A-211ENST00000471947 KCNIP2Q9NS61 270 aa11.07□□□□□ -0.64
CCDC88A-211ENST00000471947 PMCHP20382 165 aa11.07□□□□□ -0.64
CCDC88A-211ENST00000471947 TUBA4BQ9H853 241 aa11.07□□□□□ -0.64
CCDC88A-211ENST00000471947 SRD5A3Q9H8P0 318 aa11.07□□□□□ -0.64
CCDC88A-211ENST00000471947 A0A1W2PPR1 153 aa11.06□□□□□ -0.64
CCDC88A-211ENST00000471947 SNURFLB1AK76 121 aa11.06□□□□□ -0.64
CCDC88A-211ENST00000471947 PNRC1Q12796 327 aaPredicted RBP11.06□□□□□ -0.64
CCDC88A-211ENST00000471947 TMEM144Q7Z5S9 345 aa11.06□□□□□ -0.64
CCDC88A-211ENST00000471947 MMD2Q8IY49 270 aa11.06□□□□□ -0.64
CCDC88A-211ENST00000471947 OR1L4Q8NGR5 311 aa11.06□□□□□ -0.64
CCDC88A-211ENST00000471947 ZNF596Q8TC21 504 aa11.06□□□□□ -0.64
CCDC88A-211ENST00000471947 C8orf88P0DMB2 117 aa11.06□□□□□ -0.64
CCDC88A-211ENST00000471947 BPIFB3P59826 476 aa11.06□□□□□ -0.64
CCDC88A-211ENST00000471947 BATFQ16520 125 aa11.06□□□□□ -0.64
CCDC88A-211ENST00000471947 SEBOXQ9HB31 216 aaPredicted RBP11.06□□□□□ -0.64
CCDC88A-211ENST00000471947 DPM3Q9P2X0 92 aa11.06□□□□□ -0.64
CCDC88A-211ENST00000471947 BUB1B-PAK6H3BSN5 160 aa11.06□□□□□ -0.64
CCDC88A-211ENST00000471947 IL4P05112 153 aa11.06□□□□□ -0.64
CCDC88A-211ENST00000471947 P0C879 139 aa11.06□□□□□ -0.64
CCDC88A-211ENST00000471947 MC5RP33032 325 aa11.06□□□□□ -0.64
CCDC88A-211ENST00000471947 PDPNQ86YL7 162 aa11.06□□□□□ -0.64
CCDC88A-211ENST00000471947 DAZAP1Q96EP5 407 aaKnown RBP11.06□□□□□ -0.64
CCDC88A-211ENST00000471947 DUX5Q96PT3 197 aa11.06□□□□□ -0.64
CCDC88A-211ENST00000471947 ZANQ9Y493 2812 aa11.05□□□□□ -0.64
CCDC88A-211ENST00000471947 EIF4EBP1Q13541 118 aaPredicted RBP11.05□□□□□ -0.64
CCDC88A-211ENST00000471947 PRNTQ86SH4 94 aa11.05□□□□□ -0.64
CCDC88A-211ENST00000471947 EXOC3-AS1Q8N2X6 119 aa11.05□□□□□ -0.64
CCDC88A-211ENST00000471947 CBLN4Q9NTU7 201 aa11.05□□□□□ -0.64
CCDC88A-211ENST00000471947 AMY1AP04745 511 aa11.05□□□□□ -0.64
CCDC88A-211ENST00000471947 STAG3L2P0CL84 134 aa11.05□□□□□ -0.64
CCDC88A-211ENST00000471947 STAG3L3P0CL85 134 aa11.05□□□□□ -0.64
CCDC88A-211ENST00000471947 ATP5J2P56134 94 aa11.05□□□□□ -0.64
CCDC88A-211ENST00000471947 OR2T8A6NH00 312 aa11.05□□□□□ -0.64
CCDC88A-211ENST00000471947 CSN3P07498 182 aa11.05□□□□□ -0.64
CCDC88A-211ENST00000471947 CNN1P51911 297 aaKnown RBP11.05□□□□□ -0.64
CCDC88A-211ENST00000471947 LINC01551Q86U37 167 aa11.05□□□□□ -0.64
CCDC88A-211ENST00000471947 SFRP2Q96HF1 295 aa11.05□□□□□ -0.64
CCDC88A-211ENST00000471947 TIMM9Q9Y5J7 89 aa11.05□□□□□ -0.64
CCDC88A-211ENST00000471947 TRBV20OR9-2A0A075B6H5 130 aa11.04□□□□□ -0.64
CCDC88A-211ENST00000471947 MPDU1O75352 247 aa11.04□□□□□ -0.64
CCDC88A-211ENST00000471947 TCTAP57738 103 aa11.04□□□□□ -0.64
CCDC88A-211ENST00000471947 VMO1Q7Z5L0 202 aa11.04□□□□□ -0.64
CCDC88A-211ENST00000471947 CTDSP1Q9GZU7 261 aa11.04□□□□□ -0.64
CCDC88A-211ENST00000471947 CHODLQ9H9P2 273 aa11.04□□□□□ -0.64
CCDC88A-211ENST00000471947 AMMECR1Q9Y4X0 333 aaPredicted RBP11.04□□□□□ -0.64
CCDC88A-211ENST00000471947 RAI1Q7Z5J4 1906 aaPredicted RBP11.04□□□□□ -0.64
CCDC88A-211ENST00000471947 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.04□□□□□ -0.64
CCDC88A-211ENST00000471947 ST6GALNAC3Q8NDV1 305 aa11.04□□□□□ -0.64
CCDC88A-211ENST00000471947 OR2D3Q8NGH3 330 aa11.04□□□□□ -0.64
CCDC88A-211ENST00000471947 OR51M1Q9H341 326 aa11.04□□□□□ -0.64
CCDC88A-211ENST00000471947 PDE6DO43924 150 aa11.04□□□□□ -0.64
CCDC88A-211ENST00000471947 HYPMO75409 117 aa11.04□□□□□ -0.64
CCDC88A-211ENST00000471947 GZMBP10144 247 aa11.04□□□□□ -0.64
CCDC88A-211ENST00000471947 LCNL1Q6ZST4 164 aa11.04□□□□□ -0.64
CCDC88A-211ENST00000471947 OR1L6Q8NGR2 347 aa11.04□□□□□ -0.64
CCDC88A-211ENST00000471947 PACRGQ96M98 296 aaPredicted RBP11.04□□□□□ -0.64
CCDC88A-211ENST00000471947 SSBP4Q9BWG4 385 aaPredicted RBP11.04□□□□□ -0.64
CCDC88A-211ENST00000471947 CLEC5AQ9NY25 188 aa11.04□□□□□ -0.64
CCDC88A-211ENST00000471947 SIGLEC9Q9Y336 463 aa11.04□□□□□ -0.64
CCDC88A-211ENST00000471947 SOX21Q9Y651 276 aaPredicted RBP11.04□□□□□ -0.64
CCDC88A-211ENST00000471947 NDUFA2O43678 99 aa11.03□□□□□ -0.64
CCDC88A-211ENST00000471947 OR5AN1Q8NGI8 311 aa11.03□□□□□ -0.64
CCDC88A-211ENST00000471947 FABP1P07148 127 aa11.03□□□□□ -0.64
CCDC88A-211ENST00000471947 GOLT1AQ6ZVE7 132 aa11.03□□□□□ -0.64
CCDC88A-211ENST00000471947 BET1LQ9NYM9 111 aa11.03□□□□□ -0.64
CCDC88A-211ENST00000471947 ITPR1Q14643 2758 aa11.03□□□□□ -0.64
CCDC88A-211ENST00000471947 TMEM250H0YL14 139 aa11.02□□□□□ -0.64
CCDC88A-211ENST00000471947 IGHV3-11P01762 117 aa11.02□□□□□ -0.64
CCDC88A-211ENST00000471947 UNQ5815/PRO19632Q6UWF5 114 aa11.02□□□□□ -0.64
CCDC88A-211ENST00000471947 TGOLN2O43493 480 aa11.02□□□□□ -0.65
CCDC88A-211ENST00000471947 PSG1P11464 419 aa11.02□□□□□ -0.65
CCDC88A-211ENST00000471947 MFAP2P55001 183 aa11.02□□□□□ -0.65
CCDC88A-211ENST00000471947 ZNF833PQ6ZTB9 187 aa11.02□□□□□ -0.65
CCDC88A-211ENST00000471947 NACAE9PAV3 2078 aa11.02□□□□□ -0.65
CCDC88A-211ENST00000471947 M0R3E3 92 aa11.02□□□□□ -0.65
CCDC88A-211ENST00000471947 ZFP36P26651 326 aaKnown RBP11.02□□□□□ -0.65
CCDC88A-211ENST00000471947 FOXA3P55318 350 aaPredicted RBP11.02□□□□□ -0.65
CCDC88A-211ENST00000471947 NDUFA4L2Q9NRX3 87 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 101.7 ms