RNA–Protein interactions for RNA: ENST00000471246.1

UBXN4-207, Transcript of UBX domain protein 4, humanhuman

TSL 3

Gene UBXN4, Length 395 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBXN4-207ENST00000471246 ZNF439Q8NDP4 499 aa-0.02□□□□□ -2.41
UBXN4-207ENST00000471246 WFDC9Q8NEX5 89 aa-0.02□□□□□ -2.41
UBXN4-207ENST00000471246 FDCSPQ8NFU4 85 aa-0.02□□□□□ -2.41
UBXN4-207ENST00000471246 OR4S1Q8NGB4 309 aa-0.02□□□□□ -2.41
UBXN4-207ENST00000471246 OR13C8Q8NGS7 320 aa-0.02□□□□□ -2.41
UBXN4-207ENST00000471246 OR2Y1Q8NGV0 311 aa-0.02□□□□□ -2.41
UBXN4-207ENST00000471246 MITD1Q8WV92 249 aa-0.02□□□□□ -2.41
UBXN4-207ENST00000471246 TMA16Q96EY4 203 aaKnown RBP-0.02□□□□□ -2.41
UBXN4-207ENST00000471246 LINC01600Q96MT4 127 aa-0.02□□□□□ -2.41
UBXN4-207ENST00000471246 IMMP2LQ96T52 175 aa-0.02□□□□□ -2.41
UBXN4-207ENST00000471246 HINT2Q9BX68 163 aa-0.02□□□□□ -2.41
UBXN4-207ENST00000471246 TTTY13Q9BZ97 58 aa-0.02□□□□□ -2.41
UBXN4-207ENST00000471246 TMEM222Q9H0R3 208 aa-0.02□□□□□ -2.41
UBXN4-207ENST00000471246 UBQLN4Q9NRR5 601 aa-0.02□□□□□ -2.41
UBXN4-207ENST00000471246 PLAC8Q9NZF1 115 aa-0.02□□□□□ -2.41
UBXN4-207ENST00000471246 POLR3HQ9Y535 204 aaPredicted RBP-0.02□□□□□ -2.41
UBXN4-207ENST00000471246 RBM7Q9Y580 266 aaKnown RBP-0.02□□□□□ -2.41
UBXN4-207ENST00000471246 TIMM9Q9Y5J7 89 aa-0.02□□□□□ -2.41
UBXN4-207ENST00000471246 C4BP0C0L5 1744 aa-0.02□□□□□ -2.41
UBXN4-207ENST00000471246 IFT172Q9UG01 1749 aa-0.02□□□□□ -2.41
UBXN4-207ENST00000471246 PTPRFP10586 1907 aa-0.03□□□□□ -2.41
UBXN4-207ENST00000471246 CPSF1Q10570 1443 aaKnown RBP-0.03□□□□□ -2.41
UBXN4-207ENST00000471246 RIC1Q4ADV7 1423 aa-0.03□□□□□ -2.41
UBXN4-207ENST00000471246 TNS3Q68CZ2 1445 aa-0.03□□□□□ -2.41
UBXN4-207ENST00000471246 ANKRD36CQ5JPF3 1778 aa-0.03□□□□□ -2.41
UBXN4-207ENST00000471246 MAP3K19Q56UN5 1328 aa-0.03□□□□□ -2.41
UBXN4-207ENST00000471246 TRAV7A0A075B6U4 112 aa-0.03□□□□□ -2.41
UBXN4-207ENST00000471246 A0A087WUU8 490 aa-0.03□□□□□ -2.41
UBXN4-207ENST00000471246 A0A0J9YW62 118 aa-0.03□□□□□ -2.41
UBXN4-207ENST00000471246 A0A1B0GW15 77 aa-0.03□□□□□ -2.41
UBXN4-207ENST00000471246 GOLGA6L10A6NI86 522 aa-0.03□□□□□ -2.41
UBXN4-207ENST00000471246 IBA57-AS1B1ANH7 110 aa-0.03□□□□□ -2.41
UBXN4-207ENST00000471246 GOLGA6L19H0YKK7 550 aa-0.03□□□□□ -2.41
UBXN4-207ENST00000471246 MRASO14807 208 aa-0.03□□□□□ -2.41
UBXN4-207ENST00000471246 CREBL2O60519 120 aaPredicted RBP-0.03□□□□□ -2.41
UBXN4-207ENST00000471246 ARL6IP5O75915 188 aa-0.03□□□□□ -2.41
UBXN4-207ENST00000471246 SNAP29O95721 258 aa-0.03□□□□□ -2.41
UBXN4-207ENST00000471246 MT2AP02795 61 aa-0.03□□□□□ -2.41
UBXN4-207ENST00000471246 PTNP21246 168 aa-0.03□□□□□ -2.41
UBXN4-207ENST00000471246 PSMB8P28062 276 aa-0.03□□□□□ -2.41
UBXN4-207ENST00000471246 PSMD7P51665 324 aa-0.03□□□□□ -2.41
UBXN4-207ENST00000471246 TAS2R20P59543 309 aa-0.03□□□□□ -2.41
UBXN4-207ENST00000471246 TPI1P60174 286 aa-0.03□□□□□ -2.41
UBXN4-207ENST00000471246 FLOT2Q14254 428 aa-0.03□□□□□ -2.41
UBXN4-207ENST00000471246 TMEM249Q2WGJ8 235 aa-0.03□□□□□ -2.41
UBXN4-207ENST00000471246 ASB16-AS1Q495Z4 193 aa-0.03□□□□□ -2.41
UBXN4-207ENST00000471246 SCGB1D4Q6XE38 83 aa-0.03□□□□□ -2.41
UBXN4-207ENST00000471246 PDZD9Q8IXQ8 264 aa-0.03□□□□□ -2.41
UBXN4-207ENST00000471246 C1orf174Q8IYL3 243 aa-0.03□□□□□ -2.41
UBXN4-207ENST00000471246 LRRC34Q8IZ02 419 aa-0.03□□□□□ -2.41
UBXN4-207ENST00000471246 PPTC7Q8NI37 304 aa-0.03□□□□□ -2.41
UBXN4-207ENST00000471246 ZNF675Q8TD23 568 aa-0.03□□□□□ -2.41
UBXN4-207ENST00000471246 RNASE6Q93091 150 aaKnown RBP-0.03□□□□□ -2.41
UBXN4-207ENST00000471246 PPWD1Q96BP3 646 aaKnown RBP-0.03□□□□□ -2.41
UBXN4-207ENST00000471246 OPTNQ96CV9 577 aa-0.03□□□□□ -2.41
UBXN4-207ENST00000471246 C19orf60Q96EN9 201 aa-0.03□□□□□ -2.41
UBXN4-207ENST00000471246 CPNE2Q96FN4 548 aaPredicted RBP-0.03□□□□□ -2.41
UBXN4-207ENST00000471246 FAM210AQ96ND0 272 aa-0.03□□□□□ -2.41
UBXN4-207ENST00000471246 OR7D2Q96RA2 312 aa-0.03□□□□□ -2.41
UBXN4-207ENST00000471246 HBEGFQ99075 208 aa-0.03□□□□□ -2.41
UBXN4-207ENST00000471246 TMEM70Q9BUB7 260 aa-0.03□□□□□ -2.41
UBXN4-207ENST00000471246 EIF5A2Q9GZV4 153 aaKnown RBP-0.03□□□□□ -2.41
UBXN4-207ENST00000471246 TRABDQ9H4I3 376 aa-0.03□□□□□ -2.41
UBXN4-207ENST00000471246 MAT2BQ9NZL9 334 aa-0.03□□□□□ -2.41
UBXN4-207ENST00000471246 COMMD9Q9P000 198 aa-0.03□□□□□ -2.41
UBXN4-207ENST00000471246 TP73-AS1Q9UF72 201 aa-0.03□□□□□ -2.41
UBXN4-207ENST00000471246 RBMX2Q9Y388 322 aaKnown RBP-0.03□□□□□ -2.41
UBXN4-207ENST00000471246 GMEB1Q9Y692 573 aa-0.03□□□□□ -2.41
UBXN4-207ENST00000471246 BZW2Q9Y6E2 419 aaKnown RBP-0.03□□□□□ -2.41
UBXN4-207ENST00000471246 SCN3AQ9NY46 2000 aa-0.03□□□□□ -2.41
UBXN4-207ENST00000471246 NUP155O75694 1391 aa-0.04□□□□□ -2.42
UBXN4-207ENST00000471246 CCNB3Q8WWL7 1395 aa-0.04□□□□□ -2.42
UBXN4-207ENST00000471246 PLIN4Q96Q06 1357 aa-0.04□□□□□ -2.42
UBXN4-207ENST00000471246 TRAV38-1A0A0B4J264 116 aa-0.04□□□□□ -2.42
UBXN4-207ENST00000471246 CLPSL1A2RUU4 121 aa-0.04□□□□□ -2.42
UBXN4-207ENST00000471246 MEIS3P1A6NDR6 274 aa-0.04□□□□□ -2.42
UBXN4-207ENST00000471246 OR51F1A6NGY5 319 aa-0.04□□□□□ -2.42
UBXN4-207ENST00000471246 B4DSR2 109 aa-0.04□□□□□ -2.42
UBXN4-207ENST00000471246 H3BT86 120 aa-0.04□□□□□ -2.42
UBXN4-207ENST00000471246 OTCP00480 354 aa-0.04□□□□□ -2.42
UBXN4-207ENST00000471246 HBZP02008 142 aa-0.04□□□□□ -2.42
UBXN4-207ENST00000471246 C1QBP02746 253 aa-0.04□□□□□ -2.42
UBXN4-207ENST00000471246 LGALS1P09382 135 aaKnown RBP-0.04□□□□□ -2.42
UBXN4-207ENST00000471246 TRGC1P0CF51 173 aa-0.04□□□□□ -2.42
UBXN4-207ENST00000471246 UBBP0CG47 229 aa-0.04□□□□□ -2.42
UBXN4-207ENST00000471246 LIMS3P0CW19 117 aa-0.04□□□□□ -2.42
UBXN4-207ENST00000471246 LIMS4P0CW20 117 aa-0.04□□□□□ -2.42
UBXN4-207ENST00000471246 RNASE3P12724 160 aaKnown RBP-0.04□□□□□ -2.42
UBXN4-207ENST00000471246 MT1GP13640 62 aa-0.04□□□□□ -2.42
UBXN4-207ENST00000471246 NQO2P16083 231 aa-0.04□□□□□ -2.42
UBXN4-207ENST00000471246 ADORA1P30542 326 aa-0.04□□□□□ -2.42
UBXN4-207ENST00000471246 ALDH3A1P30838 453 aa-0.04□□□□□ -2.42
UBXN4-207ENST00000471246 CA5AP35218 305 aa-0.04□□□□□ -2.42
UBXN4-207ENST00000471246 RPL28P46779 137 aaKnown RBP-0.04□□□□□ -2.42
UBXN4-207ENST00000471246 EMP1P54849 157 aa-0.04□□□□□ -2.42
UBXN4-207ENST00000471246 RAB14P61106 215 aa-0.04□□□□□ -2.42
UBXN4-207ENST00000471246 DAD1P61803 113 aa-0.04□□□□□ -2.42
UBXN4-207ENST00000471246 HIST1H4AP62805 103 aaKnown RBP-0.04□□□□□ -2.42
UBXN4-207ENST00000471246 UBA52P62987 128 aaKnown RBP-0.04□□□□□ -2.42
UBXN4-207ENST00000471246 TMEM267Q0VDI3 215 aaPredicted RBP-0.04□□□□□ -2.42
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms