RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 OR1S2Q8NGQ3 325 aa16.26■□□□□ 0.19
USP4-208ENST00000464168 OR13C8Q8NGS7 320 aa16.26■□□□□ 0.19
USP4-208ENST00000464168 TERB2Q8NHR7 220 aa16.26■□□□□ 0.19
USP4-208ENST00000464168 ZFAND1Q8TCF1 268 aa16.26■□□□□ 0.19
USP4-208ENST00000464168 Q8WTZ3 238 aa16.26■□□□□ 0.19
USP4-208ENST00000464168 FUNDC2Q9BWH2 189 aa16.26■□□□□ 0.19
USP4-208ENST00000464168 SCRT1Q9BWW7 348 aa16.26■□□□□ 0.19
USP4-208ENST00000464168 MTFP1Q9UDX5 166 aa16.26■□□□□ 0.19
USP4-208ENST00000464168 DNAH11Q96DT5 4516 aa16.26■□□□□ 0.19
USP4-208ENST00000464168 DYNC1H1Q14204 4646 aaKnown RBP16.25■□□□□ 0.19
USP4-208ENST00000464168 RPS10-NUDT3A0A1W2PQS6 291 aa16.25■□□□□ 0.19
USP4-208ENST00000464168 HNRNPCP07910 306 aaKnown RBP eCLIP16.25■□□□□ 0.19
USP4-208ENST00000464168 TBPP20226 339 aa16.25■□□□□ 0.19
USP4-208ENST00000464168 RND2P52198 227 aa16.25■□□□□ 0.19
USP4-208ENST00000464168 YPEL3P61236 119 aaPredicted RBP16.25■□□□□ 0.19
USP4-208ENST00000464168 DHODHQ02127 395 aa16.25■□□□□ 0.19
USP4-208ENST00000464168 POM121L12Q8N7R1 296 aa16.25■□□□□ 0.19
USP4-208ENST00000464168 CCDC71LQ8N9Z2 235 aa16.25■□□□□ 0.19
USP4-208ENST00000464168 OR52E5Q8NH55 327 aa16.25■□□□□ 0.19
USP4-208ENST00000464168 RNASE11Q8TAA1 199 aaKnown RBP16.25■□□□□ 0.19
USP4-208ENST00000464168 CTNNBIP1Q9NSA3 81 aaPredicted RBP16.25■□□□□ 0.19
USP4-208ENST00000464168 XCL2Q9UBD3 114 aa16.25■□□□□ 0.19
USP4-208ENST00000464168 PKD1P98161 4303 aa16.24■□□□□ 0.19
USP4-208ENST00000464168 FAM25AB3EWG3 89 aa16.24■□□□□ 0.19
USP4-208ENST00000464168 FAM25CB3EWG5 89 aa16.24■□□□□ 0.19
USP4-208ENST00000464168 FAM25GB3EWG6 89 aa16.24■□□□□ 0.19
USP4-208ENST00000464168 FAM90A26D6RGX4 464 aa16.24■□□□□ 0.19
USP4-208ENST00000464168 CDS2O95674 445 aa16.24■□□□□ 0.19
USP4-208ENST00000464168 OR10J1P30954 320 aa16.24■□□□□ 0.19
USP4-208ENST00000464168 USF2Q15853 346 aaPredicted RBP16.24■□□□□ 0.19
USP4-208ENST00000464168 FAM219AQ8IW50 185 aa16.24■□□□□ 0.19
USP4-208ENST00000464168 HEYLQ9NQ87 328 aaPredicted RBP16.24■□□□□ 0.19
USP4-208ENST00000464168 H3BMM0 161 aa16.23■□□□□ 0.19
USP4-208ENST00000464168 B3GALNT1O75752 331 aa16.23■□□□□ 0.19
USP4-208ENST00000464168 P0DMU3 169 aa16.23■□□□□ 0.19
USP4-208ENST00000464168 FAM231AP0DMU4 169 aa16.23■□□□□ 0.19
USP4-208ENST00000464168 FAM231CP0DMU5 169 aa16.23■□□□□ 0.19
USP4-208ENST00000464168 SLC25A4P12235 298 aa16.23■□□□□ 0.19
USP4-208ENST00000464168 RORCP51449 518 aa16.23■□□□□ 0.19
USP4-208ENST00000464168 SNRPD3P62318 126 aaKnown RBP16.23■□□□□ 0.19
USP4-208ENST00000464168 C2orf83Q53S99 150 aa16.23■□□□□ 0.19
USP4-208ENST00000464168 MARCH1Q8TCQ1 289 aa16.23■□□□□ 0.19
USP4-208ENST00000464168 TMEM170AQ8WVE7 144 aa16.23■□□□□ 0.19
USP4-208ENST00000464168 ABHD1Q96SE0 405 aa16.23■□□□□ 0.19
USP4-208ENST00000464168 C1QTNF4Q9BXJ3 329 aa16.23■□□□□ 0.19
USP4-208ENST00000464168 TMEM222Q9H0R3 208 aa16.23■□□□□ 0.19
USP4-208ENST00000464168 SEPSECSQ9HD40 501 aaKnown RBP16.23■□□□□ 0.19
USP4-208ENST00000464168 RTL8CO15255 209 aa16.22■□□□□ 0.19
USP4-208ENST00000464168 CD74P04233 296 aa16.22■□□□□ 0.19
USP4-208ENST00000464168 NUTF2P61970 127 aaKnown RBP16.22■□□□□ 0.19
USP4-208ENST00000464168 LHFPL5Q8TAF8 219 aa16.22■□□□□ 0.19
USP4-208ENST00000464168 RNASEH2CQ8TDP1 164 aaKnown RBP16.22■□□□□ 0.19
USP4-208ENST00000464168 GLYATL2Q8WU03 294 aa16.22■□□□□ 0.19
USP4-208ENST00000464168 NDUFAF3Q9BU61 184 aa16.22■□□□□ 0.19
USP4-208ENST00000464168 NRN1Q9NPD7 142 aa16.22■□□□□ 0.19
USP4-208ENST00000464168 BUB3O43684 328 aa16.21■□□□□ 0.19
USP4-208ENST00000464168 NXPH3O95157 252 aa16.21■□□□□ 0.19
USP4-208ENST00000464168 IL4P05112 153 aa16.21■□□□□ 0.19
USP4-208ENST00000464168 OR5AC1P0C628 307 aa16.21■□□□□ 0.19
USP4-208ENST00000464168 SCGB2B2Q4G0G5 96 aa16.21■□□□□ 0.19
USP4-208ENST00000464168 MZT2AQ6P582 158 aa16.21■□□□□ 0.19
USP4-208ENST00000464168 TMEM229BQ8NBD8 167 aa16.21■□□□□ 0.19
USP4-208ENST00000464168 M0R2N4 97 aa16.2■□□□□ 0.18
USP4-208ENST00000464168 NPY1RP25929 384 aa16.2■□□□□ 0.18
USP4-208ENST00000464168 SELENOHQ8IZQ5 122 aaKnown RBP16.2■□□□□ 0.18
USP4-208ENST00000464168 SLC24A4Q8NFF2 622 aa16.2■□□□□ 0.18
USP4-208ENST00000464168 NPIPB3Q92617 1050 aa16.2■□□□□ 0.18
USP4-208ENST00000464168 RBPMSQ93062 196 aaKnown RBP16.2■□□□□ 0.18
USP4-208ENST00000464168 GPR146Q96CH1 333 aa16.2■□□□□ 0.18
USP4-208ENST00000464168 RTBDNQ9BSG5 229 aaPredicted RBP16.2■□□□□ 0.18
USP4-208ENST00000464168 EXTL2Q9UBQ6 330 aa16.2■□□□□ 0.18
USP4-208ENST00000464168 CACNG5Q9UF02 275 aa16.2■□□□□ 0.18
USP4-208ENST00000464168 TEX13DA0A0J9YY54 714 aaPredicted RBP16.19■□□□□ 0.18
USP4-208ENST00000464168 PRSS29PA6NIE9 313 aa16.19■□□□□ 0.18
USP4-208ENST00000464168 TNFAIP8O95379 198 aa16.19■□□□□ 0.18
USP4-208ENST00000464168 RAB3DO95716 219 aa16.19■□□□□ 0.18
USP4-208ENST00000464168 RD3LP0DJH9 198 aa16.19■□□□□ 0.18
USP4-208ENST00000464168 MED14OSP0DP75 135 aa16.19■□□□□ 0.18
USP4-208ENST00000464168 HLA-DRB4P13762 266 aa16.19■□□□□ 0.18
USP4-208ENST00000464168 SIGLEC15Q6ZMC9 328 aa16.19■□□□□ 0.18
USP4-208ENST00000464168 ZNF705AQ6ZN79 300 aaPredicted RBP16.19■□□□□ 0.18
USP4-208ENST00000464168 HLA-DRB4X5D2U9 266 aa16.19■□□□□ 0.18
USP4-208ENST00000464168 CEBPZOSA8MTT3 80 aa16.18■□□□□ 0.18
USP4-208ENST00000464168 TOMM40O96008 361 aa16.18■□□□□ 0.18
USP4-208ENST00000464168 TAS2R19P59542 299 aa16.18■□□□□ 0.18
USP4-208ENST00000464168 STEAP1BQ6NZ63 245 aa16.18■□□□□ 0.18
USP4-208ENST00000464168 NEU1Q99519 415 aa16.18■□□□□ 0.18
USP4-208ENST00000464168 NAA60Q9H7X0 242 aa16.18■□□□□ 0.18
USP4-208ENST00000464168 ZNF705FA8MVS1 300 aaPredicted RBP16.17■□□□□ 0.18
USP4-208ENST00000464168 ZNF705DP0CH99 300 aaPredicted RBP16.17■□□□□ 0.18
USP4-208ENST00000464168 ZNF705BP0CI00 300 aaPredicted RBP16.17■□□□□ 0.18
USP4-208ENST00000464168 NKX2-1P43699 371 aaPredicted RBP16.17■□□□□ 0.18
USP4-208ENST00000464168 MEF2DQ14814 521 aa16.17■□□□□ 0.18
USP4-208ENST00000464168 ETFRF1Q6IPR1 90 aa16.17■□□□□ 0.18
USP4-208ENST00000464168 ACY3Q96HD9 319 aa16.17■□□□□ 0.18
USP4-208ENST00000464168 GSTZ1O43708 216 aaPredicted RBP16.16■□□□□ 0.18
USP4-208ENST00000464168 SPART-AS1P0CW21 52 aa16.16■□□□□ 0.18
USP4-208ENST00000464168 PSG1P11464 419 aa16.16■□□□□ 0.18
USP4-208ENST00000464168 LGALS9BQ3B8N2 356 aa16.16■□□□□ 0.18
USP4-208ENST00000464168 GDF5OSQ5U4N7 250 aa16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms