RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 CENPVQ7Z7K6 275 aaPredicted RBP15.77■□□□□ 0.11
CCDC88B-204ENST00000463837 OR9G4Q8NGQ1 327 aa15.77■□□□□ 0.11
CCDC88B-204ENST00000463837 FABP5P3A8MUU1 101 aa15.76■□□□□ 0.11
CCDC88B-204ENST00000463837 HGFACQ04756 655 aa15.76■□□□□ 0.11
CCDC88B-204ENST00000463837 SPSB3Q6PJ21 355 aa15.76■□□□□ 0.11
CCDC88B-204ENST00000463837 NUP37Q8NFH4 326 aa15.76■□□□□ 0.11
CCDC88B-204ENST00000463837 DOCK6Q96HP0 2047 aa15.76■□□□□ 0.11
CCDC88B-204ENST00000463837 TGFAP01135 160 aa15.76■□□□□ 0.11
CCDC88B-204ENST00000463837 LEPP41159 167 aa15.76■□□□□ 0.11
CCDC88B-204ENST00000463837 MEIG1Q5JSS6 88 aa15.76■□□□□ 0.11
CCDC88B-204ENST00000463837 UBE2L6O14933 153 aa15.76■□□□□ 0.11
CCDC88B-204ENST00000463837 SLC25A2Q9BXI2 301 aa15.76■□□□□ 0.11
CCDC88B-204ENST00000463837 TP53BP1Q12888 1972 aaPredicted RBP15.76■□□□□ 0.11
CCDC88B-204ENST00000463837 HAX1O00165 279 aa15.76■□□□□ 0.11
CCDC88B-204ENST00000463837 GGNQ86UU5 652 aa15.76■□□□□ 0.11
CCDC88B-204ENST00000463837 NUDT10Q8NFP7 164 aa15.76■□□□□ 0.11
CCDC88B-204ENST00000463837 NUDT11Q96G61 164 aa15.76■□□□□ 0.11
CCDC88B-204ENST00000463837 FBXL7Q9UJT9 491 aa15.76■□□□□ 0.11
CCDC88B-204ENST00000463837 NDUFA3O95167 84 aa15.75■□□□□ 0.11
CCDC88B-204ENST00000463837 LY6EQ16553 131 aa15.75■□□□□ 0.11
CCDC88B-204ENST00000463837 GEMIN7Q9H840 131 aaKnown RBP15.75■□□□□ 0.11
CCDC88B-204ENST00000463837 GZMBP10144 247 aa15.75■□□□□ 0.11
CCDC88B-204ENST00000463837 SLC25A48Q6ZT89 311 aaKnown RBP15.75■□□□□ 0.11
CCDC88B-204ENST00000463837 TMEM105Q8N8V8 129 aa15.75■□□□□ 0.11
CCDC88B-204ENST00000463837 ARPC1AQ92747 370 aa15.75■□□□□ 0.11
CCDC88B-204ENST00000463837 SLC50A1Q9BRV3 221 aa15.75■□□□□ 0.11
CCDC88B-204ENST00000463837 IGHV3OR16-12A0A075B7B8 117 aa15.75■□□□□ 0.11
CCDC88B-204ENST00000463837 RNASE1P07998 156 aaKnown RBP15.75■□□□□ 0.11
CCDC88B-204ENST00000463837 RIPPLY3P57055 190 aa15.75■□□□□ 0.11
CCDC88B-204ENST00000463837 TMEM256Q8N2U0 113 aa15.75■□□□□ 0.11
CCDC88B-204ENST00000463837 NHP2Q9NX24 153 aaKnown RBP15.75■□□□□ 0.11
CCDC88B-204ENST00000463837 DPM2O94777 84 aa15.75■□□□□ 0.11
CCDC88B-204ENST00000463837 TSPAN13O95857 204 aa15.75■□□□□ 0.11
CCDC88B-204ENST00000463837 SMPXQ9UHP9 88 aa15.75■□□□□ 0.11
CCDC88B-204ENST00000463837 PSG8Q9UQ74 426 aa15.75■□□□□ 0.11
CCDC88B-204ENST00000463837 IGHV3OR16-8A0A075B7F1 116 aa15.74■□□□□ 0.11
CCDC88B-204ENST00000463837 C17orf100A8MU93 164 aa15.74■□□□□ 0.11
CCDC88B-204ENST00000463837 FAM27E3Q08E93 113 aa15.74■□□□□ 0.11
CCDC88B-204ENST00000463837 ZNF664Q8N3J9 261 aa15.74■□□□□ 0.11
CCDC88B-204ENST00000463837 MGST2Q99735 147 aa15.74■□□□□ 0.11
CCDC88B-204ENST00000463837 PAX1P15863 534 aa15.74■□□□□ 0.11
CCDC88B-204ENST00000463837 SNRPD3P62318 126 aaKnown RBP15.74■□□□□ 0.11
CCDC88B-204ENST00000463837 C8orf46Q8TAG6 207 aa15.74■□□□□ 0.11
CCDC88B-204ENST00000463837 RNF144BQ7Z419 303 aa15.74■□□□□ 0.11
CCDC88B-204ENST00000463837 MESP1Q9BRJ9 268 aa15.74■□□□□ 0.11
CCDC88B-204ENST00000463837 PF4P02776 101 aa15.73■□□□□ 0.11
CCDC88B-204ENST00000463837 FOXF2Q12947 444 aa15.73■□□□□ 0.11
CCDC88B-204ENST00000463837 OR2K2Q8NGT1 345 aa15.73■□□□□ 0.11
CCDC88B-204ENST00000463837 CEP250Q9BV73 2442 aa15.73■□□□□ 0.11
CCDC88B-204ENST00000463837 CNOT1A5YKK6 2376 aaKnown RBP15.73■□□□□ 0.11
CCDC88B-204ENST00000463837 FNDC10F2Z333 226 aa15.73■□□□□ 0.11
CCDC88B-204ENST00000463837 IGKV3-20P01619 116 aa15.73■□□□□ 0.11
CCDC88B-204ENST00000463837 TNFRSF14Q92956 283 aa15.73■□□□□ 0.11
CCDC88B-204ENST00000463837 RNF125Q96EQ8 232 aa15.73■□□□□ 0.11
CCDC88B-204ENST00000463837 CACNA1GO43497 2377 aa15.73■□□□□ 0.11
CCDC88B-204ENST00000463837 IGKV1D-33P01593 117 aa15.72■□□□□ 0.11
CCDC88B-204ENST00000463837 IGKV1-33P01594 117 aa15.72■□□□□ 0.11
CCDC88B-204ENST00000463837 RLFQ13129 1914 aa15.72■□□□□ 0.11
CCDC88B-204ENST00000463837 CACNA1EQ15878 2313 aa15.72■□□□□ 0.11
CCDC88B-204ENST00000463837 C9JQL5 133 aa15.72■□□□□ 0.11
CCDC88B-204ENST00000463837 TMEM50AO95807 157 aa15.72■□□□□ 0.11
CCDC88B-204ENST00000463837 CACNG7P62955 275 aa15.72■□□□□ 0.11
CCDC88B-204ENST00000463837 SFTA2Q6UW10 78 aa15.72■□□□□ 0.11
CCDC88B-204ENST00000463837 KLHDC3Q9BQ90 382 aa15.72■□□□□ 0.11
CCDC88B-204ENST00000463837 ERVK11-1P61568 191 aa15.72■□□□□ 0.11
CCDC88B-204ENST00000463837 FAM169BQ8N8A8 192 aa15.72■□□□□ 0.11
CCDC88B-204ENST00000463837 C9orf106Q8NAJ2 232 aa15.72■□□□□ 0.11
CCDC88B-204ENST00000463837 CFHR1Q03591 330 aa15.71■□□□□ 0.11
CCDC88B-204ENST00000463837 ZFP36L1Q07352 338 aaKnown RBP15.71■□□□□ 0.11
CCDC88B-204ENST00000463837 MPDZO75970 2070 aa15.71■□□□□ 0.11
CCDC88B-204ENST00000463837 ARHGEF17Q96PE2 2063 aaPredicted RBP15.71■□□□□ 0.11
CCDC88B-204ENST00000463837 SRSF1Q07955 248 aaKnown RBP eCLIP15.71■□□□□ 0.118e-7■■■■□ 25.6
CCDC88B-204ENST00000463837 LINC01549A6NIU2 74 aa15.71■□□□□ 0.11
CCDC88B-204ENST00000463837 A8MWP6 167 aa15.71■□□□□ 0.11
CCDC88B-204ENST00000463837 SRRM5B3KS81 715 aa15.71■□□□□ 0.11
CCDC88B-204ENST00000463837 NBR2O15453 112 aa15.71■□□□□ 0.11
CCDC88B-204ENST00000463837 PPP1R27Q86WC6 154 aa15.71■□□□□ 0.11
CCDC88B-204ENST00000463837 F2Z2F3 143 aa15.71■□□□□ 0.1
CCDC88B-204ENST00000463837 IFI27L1Q96BM0 104 aa15.71■□□□□ 0.1
CCDC88B-204ENST00000463837 COQ2Q96H96 371 aa15.71■□□□□ 0.1
CCDC88B-204ENST00000463837 FAM168AQ92567 244 aa15.7■□□□□ 0.1
CCDC88B-204ENST00000463837 TMEM133Q9H2Q1 129 aa15.7■□□□□ 0.1
CCDC88B-204ENST00000463837 TDGF1P3P51864 188 aa15.7■□□□□ 0.1
CCDC88B-204ENST00000463837 MAJINQ3KP22 176 aa15.7■□□□□ 0.1
CCDC88B-204ENST00000463837 C10orf126Q8N4M7 172 aa15.7■□□□□ 0.1
CCDC88B-204ENST00000463837 MRAP2Q96G30 205 aa15.7■□□□□ 0.1
CCDC88B-204ENST00000463837 SEMA5BQ9P283 1151 aa15.7■□□□□ 0.1
CCDC88B-204ENST00000463837 CEACAM4O75871 244 aa15.7■□□□□ 0.1
CCDC88B-204ENST00000463837 CCL3L1P16619 93 aa15.7■□□□□ 0.1
CCDC88B-204ENST00000463837 Q0VG73 95 aa15.7■□□□□ 0.1
CCDC88B-204ENST00000463837 SPATA31B1PQ5VZV4 182 aa15.7■□□□□ 0.1
CCDC88B-204ENST00000463837 C20orf144Q9BQM9 153 aa15.7■□□□□ 0.1
CCDC88B-204ENST00000463837 RPUSD1Q9UJJ7 312 aaKnown RBP15.7■□□□□ 0.1
CCDC88B-204ENST00000463837 Q6P435 159 aa15.69■□□□□ 0.1
CCDC88B-204ENST00000463837 C5orf24Q7Z6I8 188 aa15.69■□□□□ 0.1
CCDC88B-204ENST00000463837 RNASE6Q93091 150 aaKnown RBP15.69■□□□□ 0.1
CCDC88B-204ENST00000463837 CRIM1Q9NZV1 1036 aa15.69■□□□□ 0.1
CCDC88B-204ENST00000463837 IGKCP01834 107 aa15.69■□□□□ 0.1
CCDC88B-204ENST00000463837 C3orf79P0CE67 100 aa15.69■□□□□ 0.1
CCDC88B-204ENST00000463837 ORMDL2Q53FV1 153 aa15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 487.1 ms