RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 SLC35E4Q6ICL7 350 aa3.85□□□□□ -1.79
CCDC88A-209ENST00000456975 FAM57BQ71RH2 274 aa3.85□□□□□ -1.79
CCDC88A-209ENST00000456975 SSX8Q7RTT4 187 aa3.85□□□□□ -1.79
CCDC88A-209ENST00000456975 HSD11B1LQ7Z5J1 315 aa3.85□□□□□ -1.79
CCDC88A-209ENST00000456975 LHFPL1Q86WI0 220 aa3.85□□□□□ -1.79
CCDC88A-209ENST00000456975 SLC25A45Q8N413 288 aa3.85□□□□□ -1.79
CCDC88A-209ENST00000456975 RYBPQ8N488 228 aaPredicted RBP3.85□□□□□ -1.79
CCDC88A-209ENST00000456975 OR4K13Q8NH42 304 aa3.85□□□□□ -1.79
CCDC88A-209ENST00000456975 GNPNAT1Q96EK6 184 aaPredicted RBP3.85□□□□□ -1.79
CCDC88A-209ENST00000456975 FMC1Q96HJ9 113 aa3.85□□□□□ -1.79
CCDC88A-209ENST00000456975 GNB1LQ9BYB4 327 aa3.85□□□□□ -1.79
CCDC88A-209ENST00000456975 PBOV1Q9GZY1 135 aa3.85□□□□□ -1.79
CCDC88A-209ENST00000456975 OR5V1Q9UGF6 321 aa3.85□□□□□ -1.79
CCDC88A-209ENST00000456975 ZNF462Q96JM2 2506 aa3.84□□□□□ -1.79
CCDC88A-209ENST00000456975 NYNRINQ9P2P1 1898 aaKnown RBP3.84□□□□□ -1.79
CCDC88A-209ENST00000456975 GON4LQ3T8J9 2241 aa3.84□□□□□ -1.79
CCDC88A-209ENST00000456975 LAMA5O15230 3695 aa3.84□□□□□ -1.79
CCDC88A-209ENST00000456975 DOPEY2Q9Y3R5 2298 aa3.84□□□□□ -1.79
CCDC88A-209ENST00000456975 TRBV5-3A0A0A0MS03 114 aa3.84□□□□□ -1.79
CCDC88A-209ENST00000456975 TRAV26-2A0A0B4J265 109 aa3.84□□□□□ -1.79
CCDC88A-209ENST00000456975 TLCD2A6NGC4 264 aa3.84□□□□□ -1.79
CCDC88A-209ENST00000456975 ISLRO14498 428 aa3.84□□□□□ -1.79
CCDC88A-209ENST00000456975 PTHP01270 115 aa3.84□□□□□ -1.79
CCDC88A-209ENST00000456975 MT-ND6P03923 174 aa3.84□□□□□ -1.79
CCDC88A-209ENST00000456975 OR5AL1P0C617 328 aa3.84□□□□□ -1.79
CCDC88A-209ENST00000456975 CD59P13987 128 aa3.84□□□□□ -1.79
CCDC88A-209ENST00000456975 EDNRAP25101 427 aa3.84□□□□□ -1.79
CCDC88A-209ENST00000456975 LPAR6P43657 344 aa3.84□□□□□ -1.79
CCDC88A-209ENST00000456975 FOXA3P55318 350 aaPredicted RBP3.84□□□□□ -1.79
CCDC88A-209ENST00000456975 IGFBP7Q16270 282 aa3.84□□□□□ -1.79
CCDC88A-209ENST00000456975 Q6YL49 198 aa3.84□□□□□ -1.79
CCDC88A-209ENST00000456975 ZNF550Q7Z398 422 aa3.84□□□□□ -1.79
CCDC88A-209ENST00000456975 OR10P1Q8NGE3 313 aa3.84□□□□□ -1.79
CCDC88A-209ENST00000456975 OR10G8Q8NGN5 311 aa3.84□□□□□ -1.79
CCDC88A-209ENST00000456975 OTOSQ8NHW6 89 aa3.84□□□□□ -1.79
CCDC88A-209ENST00000456975 VGLL1Q99990 258 aa3.84□□□□□ -1.79
CCDC88A-209ENST00000456975 TMEM147Q9BVK8 224 aa3.84□□□□□ -1.79
CCDC88A-209ENST00000456975 REEP1Q9H902 201 aa3.84□□□□□ -1.79
CCDC88A-209ENST00000456975 TAAR3PQ9P1P4 343 aa3.84□□□□□ -1.79
CCDC88A-209ENST00000456975 RNF7Q9UBF6 113 aa3.84□□□□□ -1.79
CCDC88A-209ENST00000456975 CELSR3Q9NYQ7 3312 aa3.84□□□□□ -1.79
CCDC88A-209ENST00000456975 TNRC6AQ8NDV7 1962 aaKnown RBP3.84□□□□□ -1.8
CCDC88A-209ENST00000456975 hDV102S1A0JD36 115 aa3.83□□□□□ -1.8
CCDC88A-209ENST00000456975 H3BUT2 72 aa3.83□□□□□ -1.8
CCDC88A-209ENST00000456975 H7C1H1 209 aa3.83□□□□□ -1.8
CCDC88A-209ENST00000456975 APOC4-APOC2K7ER74 178 aa3.83□□□□□ -1.8
CCDC88A-209ENST00000456975 M0R129 80 aa3.83□□□□□ -1.8
CCDC88A-209ENST00000456975 NDUFB6O95139 128 aa3.83□□□□□ -1.8
CCDC88A-209ENST00000456975 DUSP14O95147 198 aaKnown RBP3.83□□□□□ -1.8
CCDC88A-209ENST00000456975 NAPSAO96009 420 aa3.83□□□□□ -1.8
CCDC88A-209ENST00000456975 IGHA1P01876 353 aa3.83□□□□□ -1.8
CCDC88A-209ENST00000456975 APOC2P02655 101 aa3.83□□□□□ -1.8
CCDC88A-209ENST00000456975 SLC25A5P05141 298 aaKnown RBP3.83□□□□□ -1.8
CCDC88A-209ENST00000456975 CECR9P0C854 216 aa3.83□□□□□ -1.8
CCDC88A-209ENST00000456975 FABP2P12104 132 aa3.83□□□□□ -1.8
CCDC88A-209ENST00000456975 APOC4P55056 127 aa3.83□□□□□ -1.8
CCDC88A-209ENST00000456975 WFDC2Q14508 124 aa3.83□□□□□ -1.8
CCDC88A-209ENST00000456975 PMCHL1Q16048 86 aa3.83□□□□□ -1.8
CCDC88A-209ENST00000456975 KCTD18Q6PI47 426 aaPredicted RBP3.83□□□□□ -1.8
CCDC88A-209ENST00000456975 COMMD6Q7Z4G1 85 aa3.83□□□□□ -1.8
CCDC88A-209ENST00000456975 MMD2Q8IY49 270 aa3.83□□□□□ -1.8
CCDC88A-209ENST00000456975 CIARTQ8N365 385 aaPredicted RBP3.83□□□□□ -1.8
CCDC88A-209ENST00000456975 C10orf126Q8N4M7 172 aa3.83□□□□□ -1.8
CCDC88A-209ENST00000456975 DEFB119Q8N690 84 aa3.83□□□□□ -1.8
CCDC88A-209ENST00000456975 C3orf56Q8N813 242 aa3.83□□□□□ -1.8
CCDC88A-209ENST00000456975 ATP6V0E2Q8NHE4 81 aa3.83□□□□□ -1.8
CCDC88A-209ENST00000456975 SPATA3Q8NHX4 192 aa3.83□□□□□ -1.8
CCDC88A-209ENST00000456975 CMTM2Q8TAZ6 248 aa3.83□□□□□ -1.8
CCDC88A-209ENST00000456975 ZPLD1Q8TCW7 415 aa3.83□□□□□ -1.8
CCDC88A-209ENST00000456975 SSC4DQ8WTU2 575 aa3.83□□□□□ -1.8
CCDC88A-209ENST00000456975 PRSS22Q9GZN4 317 aa3.83□□□□□ -1.8
CCDC88A-209ENST00000456975 TMEM191AQ9H0A3 160 aa3.83□□□□□ -1.8
CCDC88A-209ENST00000456975 BCL2L10Q9HD36 194 aa3.83□□□□□ -1.8
CCDC88A-209ENST00000456975 MSRB1Q9NZV6 116 aa3.83□□□□□ -1.8
CCDC88A-209ENST00000456975 COMMD9Q9P000 198 aa3.83□□□□□ -1.8
CCDC88A-209ENST00000456975 ZNF257Q9Y2Q1 563 aa3.83□□□□□ -1.8
CCDC88A-209ENST00000456975 UNC79Q9P2D8 2635 aa3.83□□□□□ -1.8
CCDC88A-209ENST00000456975 CCDC88CQ9P219 2028 aa3.83□□□□□ -1.8
CCDC88A-209ENST00000456975 PTPRQQ9UMZ3 2332 aa3.83□□□□□ -1.8
CCDC88A-209ENST00000456975 PTPN13Q12923 2485 aa3.83□□□□□ -1.8
CCDC88A-209ENST00000456975 IGHV4-34P06331 123 aa3.83□□□□□ -1.8
CCDC88A-209ENST00000456975 FGF3P11487 239 aaPredicted RBP3.83□□□□□ -1.8
CCDC88A-209ENST00000456975 SLC25A1P53007 311 aa3.83□□□□□ -1.8
CCDC88A-209ENST00000456975 HLA-DRB3P79483 266 aa3.83□□□□□ -1.8
CCDC88A-209ENST00000456975 ZNF90Q03938 601 aa3.83□□□□□ -1.8
CCDC88A-209ENST00000456975 LINC00303Q3SY05 128 aa3.83□□□□□ -1.8
CCDC88A-209ENST00000456975 ETDBQ3ZM63 59 aa3.83□□□□□ -1.8
CCDC88A-209ENST00000456975 C9orf153Q5TBE3 101 aa3.83□□□□□ -1.8
CCDC88A-209ENST00000456975 RPS19BP1Q86WX3 136 aaKnown RBP3.83□□□□□ -1.8
CCDC88A-209ENST00000456975 C11orf53Q8IXP5 236 aa3.83□□□□□ -1.8
CCDC88A-209ENST00000456975 C3orf22Q8N5N4 141 aa3.83□□□□□ -1.8
CCDC88A-209ENST00000456975 SCGB1C1Q8TD33 95 aa3.83□□□□□ -1.8
CCDC88A-209ENST00000456975 TVP23CQ96ET8 276 aa3.83□□□□□ -1.8
CCDC88A-209ENST00000456975 DNAJA3Q96EY1 480 aa3.83□□□□□ -1.8
CCDC88A-209ENST00000456975 EMC6Q9BV81 110 aa3.83□□□□□ -1.8
CCDC88A-209ENST00000456975 C6orf106Q9H6K1 298 aaPredicted RBP3.83□□□□□ -1.8
CCDC88A-209ENST00000456975 MPC1Q9Y5U8 109 aa3.83□□□□□ -1.8
CCDC88A-209ENST00000456975 LOC285095A0A1B0GVY8 99 aa3.82□□□□□ -1.8
CCDC88A-209ENST00000456975 SHISA9B4DS77 424 aa3.82□□□□□ -1.8
CCDC88A-209ENST00000456975 M0R2P5 195 aa3.82□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms