RNA–Protein interactions for RNA: ENST00000455732.5

USP39-208, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-208ENST00000455732 DNAH7Q8WXX0 4024 aa12.99□□□□□ -0.33
USP39-208ENST00000455732 ADAP1O75689 374 aa12.98□□□□□ -0.33
USP39-208ENST00000455732 BMI1P35226 326 aa12.98□□□□□ -0.33
USP39-208ENST00000455732 ASAH1Q13510 395 aa12.98□□□□□ -0.33
USP39-208ENST00000455732 ZNF846Q147U1 533 aa12.98□□□□□ -0.33
USP39-208ENST00000455732 OR52B4Q8NGK2 314 aa12.98□□□□□ -0.33
USP39-208ENST00000455732 RHPN1-AS1Q9BWJ2 59 aa12.98□□□□□ -0.33
USP39-208ENST00000455732 TUBA4BQ9H853 241 aa12.98□□□□□ -0.33
USP39-208ENST00000455732 TBC1D24Q9ULP9 559 aa12.98□□□□□ -0.33
USP39-208ENST00000455732 OR11H12B2RN74 326 aa12.97□□□□□ -0.33
USP39-208ENST00000455732 SYNGR2O43760 224 aa12.97□□□□□ -0.33
USP39-208ENST00000455732 IFNA21P01568 189 aa12.97□□□□□ -0.33
USP39-208ENST00000455732 OR10J1P30954 320 aa12.97□□□□□ -0.33
USP39-208ENST00000455732 GPX4P36969 197 aaPredicted RBP12.97□□□□□ -0.33
USP39-208ENST00000455732 YPEL3P61236 119 aaPredicted RBP12.97□□□□□ -0.33
USP39-208ENST00000455732 LINC00322Q6ZN03 302 aaPredicted RBP12.97□□□□□ -0.33
USP39-208ENST00000455732 VSIRQ9H7M9 311 aa12.97□□□□□ -0.33
USP39-208ENST00000455732 NUDT15Q9NV35 164 aa12.97□□□□□ -0.33
USP39-208ENST00000455732 MPTX1A8MV57 137 aa12.96□□□□□ -0.33
USP39-208ENST00000455732 UPK1BO75841 260 aa12.96□□□□□ -0.33
USP39-208ENST00000455732 IFNA4P05014 189 aa12.96□□□□□ -0.33
USP39-208ENST00000455732 CD5P06127 495 aa12.96□□□□□ -0.33
USP39-208ENST00000455732 IAPPP10997 89 aa12.96□□□□□ -0.33
USP39-208ENST00000455732 ID3Q02535 119 aa12.96□□□□□ -0.33
USP39-208ENST00000455732 TIGITQ495A1 244 aa12.96□□□□□ -0.33
USP39-208ENST00000455732 MZT2BQ6NZ67 158 aa12.96□□□□□ -0.33
USP39-208ENST00000455732 OR4D5Q8NGN0 318 aa12.96□□□□□ -0.33
USP39-208ENST00000455732 RNF2Q99496 336 aa12.96□□□□□ -0.33
USP39-208ENST00000455732 ZMAT4Q9H898 229 aa12.96□□□□□ -0.33
USP39-208ENST00000455732 RAB11AP62491 216 aa12.95□□□□□ -0.34
USP39-208ENST00000455732 RPP30P78346 268 aaKnown RBP12.95□□□□□ -0.34
USP39-208ENST00000455732 HAGHQ16775 308 aa12.95□□□□□ -0.34
USP39-208ENST00000455732 FAM90A2PQ658T7 463 aa12.95□□□□□ -0.34
USP39-208ENST00000455732 DEFB125Q8N687 156 aa12.95□□□□□ -0.34
USP39-208ENST00000455732 NPIPB3Q92617 1050 aa12.95□□□□□ -0.34
USP39-208ENST00000455732 ACY3Q96HD9 319 aa12.95□□□□□ -0.34
USP39-208ENST00000455732 FAM110AQ9BQ89 295 aa12.95□□□□□ -0.34
USP39-208ENST00000455732 MAGT1Q9H0U3 335 aa12.95□□□□□ -0.34
USP39-208ENST00000455732 WFDC10AQ9H1F0 79 aa12.95□□□□□ -0.34
USP39-208ENST00000455732 TRAV6A0A075B6T7 132 aa12.94□□□□□ -0.34
USP39-208ENST00000455732 FAM240BA0A1B0GVZ2 78 aa12.94□□□□□ -0.34
USP39-208ENST00000455732 OR4C46A6NHA9 309 aa12.94□□□□□ -0.34
USP39-208ENST00000455732 CRYBB3P26998 211 aa12.94□□□□□ -0.34
USP39-208ENST00000455732 NKX2-1P43699 371 aaPredicted RBP12.94□□□□□ -0.34
USP39-208ENST00000455732 ST8SIA2Q92186 375 aa12.94□□□□□ -0.34
USP39-208ENST00000455732 METTL26Q96S19 204 aa12.94□□□□□ -0.34
USP39-208ENST00000455732 TMEM231Q9H6L2 316 aa12.94□□□□□ -0.34
USP39-208ENST00000455732 SRD5A3Q9H8P0 318 aa12.94□□□□□ -0.34
USP39-208ENST00000455732 IGHV3-49A0A0A0MS15 119 aa12.93□□□□□ -0.34
USP39-208ENST00000455732 WRBO00258 174 aa12.93□□□□□ -0.34
USP39-208ENST00000455732 H2AFB2P0C5Z0 115 aa12.93□□□□□ -0.34
USP39-208ENST00000455732 NPPCP23582 126 aa12.93□□□□□ -0.34
USP39-208ENST00000455732 GAMTQ14353 236 aa12.93□□□□□ -0.34
USP39-208ENST00000455732 ZNF431Q8TF32 576 aaPredicted RBP12.93□□□□□ -0.34
USP39-208ENST00000455732 Q8WTZ3 238 aa12.93□□□□□ -0.34
USP39-208ENST00000455732 SLC35E1Q96K37 410 aa12.93□□□□□ -0.34
USP39-208ENST00000455732 IGHV3OR16-13A0A075B7E8 117 aa12.92□□□□□ -0.34
USP39-208ENST00000455732 IGHV3-74A0A0B4J1X5 117 aa12.92□□□□□ -0.34
USP39-208ENST00000455732 A0A1W2PS18 150 aa12.92□□□□□ -0.34
USP39-208ENST00000455732 RBMY1BA6NDE4 496 aaKnown RBP12.92□□□□□ -0.34
USP39-208ENST00000455732 RBMY1EA6NEQ0 496 aaKnown RBP12.92□□□□□ -0.34
USP39-208ENST00000455732 PRSS46E5RG02 174 aa12.92□□□□□ -0.34
USP39-208ENST00000455732 TOMM40O96008 361 aa12.92□□□□□ -0.34
USP39-208ENST00000455732 APOHP02749 345 aaPredicted RBP12.92□□□□□ -0.34
USP39-208ENST00000455732 RBMY1DP0C7P1 496 aaKnown RBP12.92□□□□□ -0.34
USP39-208ENST00000455732 POLR2GP62487 172 aaKnown RBP eCLIP12.92□□□□□ -0.34
USP39-208ENST00000455732 IAH1Q2TAA2 248 aaPredicted RBP12.92□□□□□ -0.34
USP39-208ENST00000455732 RD3LP0DJH9 198 aa12.91□□□□□ -0.34
USP39-208ENST00000455732 IFITM3Q01628 133 aa12.91□□□□□ -0.34
USP39-208ENST00000455732 ODF3L2Q3SX64 289 aa12.91□□□□□ -0.34
USP39-208ENST00000455732 TCF24Q7RTU0 167 aa12.91□□□□□ -0.34
USP39-208ENST00000455732 ZBTB8BQ8NAP8 495 aaPredicted RBP12.91□□□□□ -0.34
USP39-208ENST00000455732 SPATA25Q9BR10 227 aa12.91□□□□□ -0.34
USP39-208ENST00000455732 SEC22CQ9BRL7 303 aa12.91□□□□□ -0.34
USP39-208ENST00000455732 STRAPQ9Y3F4 350 aaKnown RBP12.91□□□□□ -0.34
USP39-208ENST00000455732 U3KQE9 123 aa12.91□□□□□ -0.34
USP39-208ENST00000455732 IGKV1D-37A0A075B6S9 117 aa12.9□□□□□ -0.34
USP39-208ENST00000455732 TRAV2A0A0B4J234 112 aa12.9□□□□□ -0.34
USP39-208ENST00000455732 IL4P05112 153 aa12.9□□□□□ -0.34
USP39-208ENST00000455732 SPANXN5Q5MJ07 72 aa12.9□□□□□ -0.34
USP39-208ENST00000455732 LILRB2Q8N423 598 aa12.9□□□□□ -0.34
USP39-208ENST00000455732 ENKURQ8TC29 256 aa12.9□□□□□ -0.34
USP39-208ENST00000455732 NARS2Q96I59 477 aaKnown RBP12.9□□□□□ -0.34
USP39-208ENST00000455732 CITED4Q96RK1 184 aa12.9□□□□□ -0.34
USP39-208ENST00000455732 PAIP2BQ9ULR5 123 aaKnown RBP12.9□□□□□ -0.34
USP39-208ENST00000455732 ZFP92A6NM28 416 aa12.89□□□□□ -0.35
USP39-208ENST00000455732 C3orf84H3BNL1 204 aa12.89□□□□□ -0.35
USP39-208ENST00000455732 H3BP45 60 aa12.89□□□□□ -0.35
USP39-208ENST00000455732 SSSCA1O60232 199 aa12.89□□□□□ -0.35
USP39-208ENST00000455732 DFFBO76075 338 aa12.89□□□□□ -0.35
USP39-208ENST00000455732 IL5P05113 134 aa12.89□□□□□ -0.35
USP39-208ENST00000455732 HNRNPCP07910 306 aaKnown RBP eCLIP12.89□□□□□ -0.35
USP39-208ENST00000455732 PSG1P11464 419 aa12.89□□□□□ -0.35
USP39-208ENST00000455732 PAFAH1B2P68402 229 aa12.89□□□□□ -0.35
USP39-208ENST00000455732 USF2Q15853 346 aaPredicted RBP12.89□□□□□ -0.35
USP39-208ENST00000455732 C12orf45Q8N5I9 185 aaPredicted RBP12.89□□□□□ -0.35
USP39-208ENST00000455732 THAP8Q8NA92 274 aa12.89□□□□□ -0.35
USP39-208ENST00000455732 OR51G1Q8NGK1 321 aa12.89□□□□□ -0.35
USP39-208ENST00000455732 SMIM8Q96KF7 97 aa12.89□□□□□ -0.35
USP39-208ENST00000455732 RAB40CQ96S21 281 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms