RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 SMCO3A2RU48 225 aa8.52□□□□□ -1.05
SCN9A-205ENST00000454569 IGHV3-11P01762 117 aa8.52□□□□□ -1.05
SCN9A-205ENST00000454569 RAB9AP51151 201 aa8.52□□□□□ -1.05
SCN9A-205ENST00000454569 RND2P52198 227 aa8.52□□□□□ -1.05
SCN9A-205ENST00000454569 ATP5IP56385 69 aaPredicted RBP8.52□□□□□ -1.05
SCN9A-205ENST00000454569 TPPP2P59282 170 aa8.52□□□□□ -1.05
SCN9A-205ENST00000454569 DLK1P80370 383 aa8.52□□□□□ -1.05
SCN9A-205ENST00000454569 C15orf32Q32M92 178 aa8.52□□□□□ -1.05
SCN9A-205ENST00000454569 CENPVQ7Z7K6 275 aaPredicted RBP8.52□□□□□ -1.05
SCN9A-205ENST00000454569 KLHDC1Q8N7A1 406 aa8.52□□□□□ -1.05
SCN9A-205ENST00000454569 ACY3Q96HD9 319 aa8.52□□□□□ -1.05
SCN9A-205ENST00000454569 NDUFA7O95182 113 aa8.51□□□□□ -1.05
SCN9A-205ENST00000454569 TRBV12-3P01733 135 aa8.51□□□□□ -1.05
SCN9A-205ENST00000454569 NMBP08949 121 aa8.51□□□□□ -1.05
SCN9A-205ENST00000454569 SEC11BP0C7V7 166 aa8.51□□□□□ -1.05
SCN9A-205ENST00000454569 SPP1P10451 314 aa8.51□□□□□ -1.05
SCN9A-205ENST00000454569 GATA2P23769 480 aaPredicted RBP8.51□□□□□ -1.05
SCN9A-205ENST00000454569 GPX4P36969 197 aaPredicted RBP8.51□□□□□ -1.05
SCN9A-205ENST00000454569 RPL15P61313 204 aaKnown RBP8.51□□□□□ -1.05
SCN9A-205ENST00000454569 ATP6V1FQ16864 119 aa8.51□□□□□ -1.05
SCN9A-205ENST00000454569 C11orf44Q8N8P7 122 aa8.51□□□□□ -1.05
SCN9A-205ENST00000454569 SUN5Q8TC36 379 aa8.51□□□□□ -1.05
SCN9A-205ENST00000454569 SCGB1C1Q8TD33 95 aa8.51□□□□□ -1.05
SCN9A-205ENST00000454569 RNF141Q8WVD5 230 aa8.51□□□□□ -1.05
SCN9A-205ENST00000454569 GNPNAT1Q96EK6 184 aaPredicted RBP8.51□□□□□ -1.05
SCN9A-205ENST00000454569 CCDC140Q96MF4 163 aa8.51□□□□□ -1.05
SCN9A-205ENST00000454569 RSG1Q9BU20 258 aa8.51□□□□□ -1.05
SCN9A-205ENST00000454569 TMEM147Q9BVK8 224 aa8.51□□□□□ -1.05
SCN9A-205ENST00000454569 SH3BGRL3Q9H299 93 aa8.51□□□□□ -1.05
SCN9A-205ENST00000454569 UQCC1Q9NVA1 299 aa8.51□□□□□ -1.05
SCN9A-205ENST00000454569 WDR83OSQ9Y284 106 aa8.51□□□□□ -1.05
SCN9A-205ENST00000454569 LSM4Q9Y4Z0 139 aaKnown RBP8.51□□□□□ -1.05
SCN9A-205ENST00000454569 ATP6V0CP27449 155 aa8.5□□□□□ -1.05
SCN9A-205ENST00000454569 PROK1P58294 105 aa8.5□□□□□ -1.05
SCN9A-205ENST00000454569 ACSM6Q6P461 480 aa8.5□□□□□ -1.05
SCN9A-205ENST00000454569 NECAP1Q8NC96 275 aa8.5□□□□□ -1.05
SCN9A-205ENST00000454569 OR5AU1Q8NGC0 362 aa8.5□□□□□ -1.05
SCN9A-205ENST00000454569 ZNF502Q8TBZ5 544 aa8.5□□□□□ -1.05
SCN9A-205ENST00000454569 OR5B12Q96R08 314 aa8.5□□□□□ -1.05
SCN9A-205ENST00000454569 MGST2Q99735 147 aa8.5□□□□□ -1.05
SCN9A-205ENST00000454569 WDR61Q9GZS3 305 aaKnown RBP8.5□□□□□ -1.05
SCN9A-205ENST00000454569 GNB4Q9HAV0 340 aa8.5□□□□□ -1.05
SCN9A-205ENST00000454569 NPVFQ9HCQ7 196 aa8.5□□□□□ -1.05
SCN9A-205ENST00000454569 LINC00862A6NCI5 91 aa8.49□□□□□ -1.05
SCN9A-205ENST00000454569 CORTO00230 105 aa8.49□□□□□ -1.05
SCN9A-205ENST00000454569 WIPF1O43516 503 aa8.49□□□□□ -1.05
SCN9A-205ENST00000454569 BRI3O95415 125 aa8.49□□□□□ -1.05
SCN9A-205ENST00000454569 CD28P10747 220 aa8.49□□□□□ -1.05
SCN9A-205ENST00000454569 HIST1H1BP16401 226 aaKnown RBP8.49□□□□□ -1.05
SCN9A-205ENST00000454569 ADMP35318 185 aa8.49□□□□□ -1.05
SCN9A-205ENST00000454569 SULT1A2P50226 295 aa8.49□□□□□ -1.05
SCN9A-205ENST00000454569 ZNF90Q03938 601 aa8.49□□□□□ -1.05
SCN9A-205ENST00000454569 CDPF1Q6NVV7 123 aa8.49□□□□□ -1.05
SCN9A-205ENST00000454569 BTNL8Q6UX41 500 aa8.49□□□□□ -1.05
SCN9A-205ENST00000454569 TMEM144Q7Z5S9 345 aa8.49□□□□□ -1.05
SCN9A-205ENST00000454569 ZNF491Q8N8L2 437 aa8.49□□□□□ -1.05
SCN9A-205ENST00000454569 TMEM116Q8NCL8 245 aa8.49□□□□□ -1.05
SCN9A-205ENST00000454569 OR1L6Q8NGR2 347 aa8.49□□□□□ -1.05
SCN9A-205ENST00000454569 MYOZ3Q8TDC0 251 aa8.49□□□□□ -1.05
SCN9A-205ENST00000454569 CACNG8Q8WXS5 425 aa8.49□□□□□ -1.05
SCN9A-205ENST00000454569 CXorf58Q96LI9 332 aa8.49□□□□□ -1.05
SCN9A-205ENST00000454569 CHRDL1Q9BU40 450 aa8.49□□□□□ -1.05
SCN9A-205ENST00000454569 GGACTQ9BVM4 153 aa8.49□□□□□ -1.05
SCN9A-205ENST00000454569 PARD6GQ9BYG4 376 aaPredicted RBP8.49□□□□□ -1.05
SCN9A-205ENST00000454569 RNF114Q9Y508 228 aa8.49□□□□□ -1.05
SCN9A-205ENST00000454569 IGHV3-35A0A0C4DH35 117 aa8.48□□□□□ -1.05
SCN9A-205ENST00000454569 ANKRD34BA5PLL1 514 aa8.48□□□□□ -1.05
SCN9A-205ENST00000454569 OR2T8A6NH00 312 aa8.48□□□□□ -1.05
SCN9A-205ENST00000454569 ZNF705EA8MWA4 302 aaPredicted RBP8.48□□□□□ -1.05
SCN9A-205ENST00000454569 PPP5D1E7EU14 171 aa8.48□□□□□ -1.05
SCN9A-205ENST00000454569 H3BUA1 57 aa8.48□□□□□ -1.05
SCN9A-205ENST00000454569 IGKV1-17P01599 117 aa8.48□□□□□ -1.05
SCN9A-205ENST00000454569 CLEC3BP05452 202 aa8.48□□□□□ -1.05
SCN9A-205ENST00000454569 IGLC1P0CG04 106 aa8.48□□□□□ -1.05
SCN9A-205ENST00000454569 FGF7P21781 194 aa8.48□□□□□ -1.05
SCN9A-205ENST00000454569 S100A1P23297 94 aa8.48□□□□□ -1.05
SCN9A-205ENST00000454569 OR10J1P30954 320 aa8.48□□□□□ -1.05
SCN9A-205ENST00000454569 AKR1C1Q04828 323 aa8.48□□□□□ -1.05
SCN9A-205ENST00000454569 ATP5G2Q06055 141 aa8.48□□□□□ -1.05
SCN9A-205ENST00000454569 FOXE3Q13461 319 aa8.48□□□□□ -1.05
SCN9A-205ENST00000454569 KRTAP24-1Q3LI83 254 aa8.48□□□□□ -1.05
SCN9A-205ENST00000454569 TIGITQ495A1 244 aa8.48□□□□□ -1.05
SCN9A-205ENST00000454569 TEX38Q6PEX7 206 aa8.48□□□□□ -1.05
SCN9A-205ENST00000454569 CLEC19AQ6UXS0 136 aa8.48□□□□□ -1.05
SCN9A-205ENST00000454569 RNF152Q8N8N0 203 aa8.48□□□□□ -1.05
SCN9A-205ENST00000454569 THAP8Q8NA92 274 aa8.48□□□□□ -1.05
SCN9A-205ENST00000454569 OR2G3Q8NGZ4 309 aa8.48□□□□□ -1.05
SCN9A-205ENST00000454569 OR4X1Q8NH49 305 aa8.48□□□□□ -1.05
SCN9A-205ENST00000454569 SLC35E1Q96K37 410 aa8.48□□□□□ -1.05
SCN9A-205ENST00000454569 VSIRQ9H7M9 311 aa8.48□□□□□ -1.05
SCN9A-205ENST00000454569 C21orf62Q9NYP8 219 aa8.48□□□□□ -1.05
SCN9A-205ENST00000454569 CLPSL1A2RUU4 121 aa8.48□□□□□ -1.05
SCN9A-205ENST00000454569 AGPAT2O15120 278 aa8.48□□□□□ -1.05
SCN9A-205ENST00000454569 CLN5O75503 358 aa8.48□□□□□ -1.05
SCN9A-205ENST00000454569 ELANEP08246 267 aa8.48□□□□□ -1.05
SCN9A-205ENST00000454569 CTSGP08311 255 aa8.48□□□□□ -1.05
SCN9A-205ENST00000454569 LINC00869P0C866 280 aa8.48□□□□□ -1.05
SCN9A-205ENST00000454569 MFAP4P55083 255 aa8.48□□□□□ -1.05
SCN9A-205ENST00000454569 COMMD7Q86VX2 200 aa8.48□□□□□ -1.05
SCN9A-205ENST00000454569 VN1R17PQ8TDU5 208 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms