RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 ELOA3CA0A087WX78 387 aaPredicted RBP9.61□□□□□ -0.87
HMGB3-204ENST00000448905 GSTZ1O43708 216 aaPredicted RBP9.61□□□□□ -0.87
HMGB3-204ENST00000448905 IGKV1-17P01599 117 aa9.61□□□□□ -0.87
HMGB3-204ENST00000448905 UCP1P25874 307 aa9.61□□□□□ -0.87
HMGB3-204ENST00000448905 OR10J1P30954 320 aa9.61□□□□□ -0.87
HMGB3-204ENST00000448905 DHODHQ02127 395 aa9.61□□□□□ -0.87
HMGB3-204ENST00000448905 SCGB2B2Q4G0G5 96 aa9.61□□□□□ -0.87
HMGB3-204ENST00000448905 C16orf54Q6UWD8 224 aa9.61□□□□□ -0.87
HMGB3-204ENST00000448905 LHFPL1Q86WI0 220 aa9.61□□□□□ -0.87
HMGB3-204ENST00000448905 POM121L12Q8N7R1 296 aa9.61□□□□□ -0.87
HMGB3-204ENST00000448905 CSNK1G2-AS1Q8NCQ2 148 aa9.61□□□□□ -0.87
HMGB3-204ENST00000448905 TEX13DA0A0J9YY54 714 aaPredicted RBP9.6□□□□□ -0.87
HMGB3-204ENST00000448905 TMEM189A5PLL7 270 aa9.6□□□□□ -0.87
HMGB3-204ENST00000448905 TNFAIP8O95379 198 aa9.6□□□□□ -0.87
HMGB3-204ENST00000448905 IFNA21P01568 189 aa9.6□□□□□ -0.87
HMGB3-204ENST00000448905 SPART-AS1P0CW21 52 aa9.6□□□□□ -0.87
HMGB3-204ENST00000448905 RD3LP0DJH9 198 aa9.6□□□□□ -0.87
HMGB3-204ENST00000448905 C4BPBP20851 252 aa9.6□□□□□ -0.87
HMGB3-204ENST00000448905 VBP1P61758 197 aa9.6□□□□□ -0.87
HMGB3-204ENST00000448905 BSXQ3C1V8 233 aa9.6□□□□□ -0.87
HMGB3-204ENST00000448905 C2orf83Q53S99 150 aa9.6□□□□□ -0.87
HMGB3-204ENST00000448905 ABHD1Q96SE0 405 aa9.6□□□□□ -0.87
HMGB3-204ENST00000448905 NRN1Q9NPD7 142 aa9.6□□□□□ -0.87
HMGB3-204ENST00000448905 MRPL36Q9P0J6 103 aaKnown RBP9.6□□□□□ -0.87
HMGB3-204ENST00000448905 MTFP1Q9UDX5 166 aa9.6□□□□□ -0.87
HMGB3-204ENST00000448905 C14orf166Q9Y224 244 aaKnown RBP9.6□□□□□ -0.87
HMGB3-204ENST00000448905 U3KQE9 123 aa9.6□□□□□ -0.87
HMGB3-204ENST00000448905 KIAA1109Q2LD37 5005 aa9.6□□□□□ -0.87
HMGB3-204ENST00000448905 SMIM9A6NGZ8 99 aa9.59□□□□□ -0.87
HMGB3-204ENST00000448905 CEBPZOSA8MTT3 80 aa9.59□□□□□ -0.87
HMGB3-204ENST00000448905 CDS2O95674 445 aa9.59□□□□□ -0.87
HMGB3-204ENST00000448905 RAB3DO95716 219 aa9.59□□□□□ -0.87
HMGB3-204ENST00000448905 IFNA10P01566 189 aa9.59□□□□□ -0.87
HMGB3-204ENST00000448905 IGLC1P0CG04 106 aa9.59□□□□□ -0.87
HMGB3-204ENST00000448905 NUP62P37198 522 aaPredicted RBP9.59□□□□□ -0.87
HMGB3-204ENST00000448905 RND2P52198 227 aa9.59□□□□□ -0.87
HMGB3-204ENST00000448905 TAS2R19P59542 299 aa9.59□□□□□ -0.87
HMGB3-204ENST00000448905 NCS1P62166 190 aa9.59□□□□□ -0.87
HMGB3-204ENST00000448905 C12orf74Q32Q52 190 aa9.59□□□□□ -0.87
HMGB3-204ENST00000448905 PRSS54Q6PEW0 395 aa9.59□□□□□ -0.87
HMGB3-204ENST00000448905 TMEM229BQ8NBD8 167 aa9.59□□□□□ -0.87
HMGB3-204ENST00000448905 OR52I2Q8NH67 350 aa9.59□□□□□ -0.87
HMGB3-204ENST00000448905 FUNDC2Q9BWH2 189 aa9.59□□□□□ -0.87
HMGB3-204ENST00000448905 TMEM222Q9H0R3 208 aa9.59□□□□□ -0.87
HMGB3-204ENST00000448905 XCL2Q9UBD3 114 aa9.59□□□□□ -0.87
HMGB3-204ENST00000448905 FAM90A26D6RGX4 464 aa9.58□□□□□ -0.88
HMGB3-204ENST00000448905 H3BMM0 161 aa9.58□□□□□ -0.88
HMGB3-204ENST00000448905 AMBPP02760 352 aa9.58□□□□□ -0.88
HMGB3-204ENST00000448905 IL4P05112 153 aa9.58□□□□□ -0.88
HMGB3-204ENST00000448905 ID1P41134 155 aa9.58□□□□□ -0.88
HMGB3-204ENST00000448905 AARDQ4LEZ3 155 aa9.58□□□□□ -0.88
HMGB3-204ENST00000448905 RNASE12Q5GAN4 147 aaKnown RBP9.58□□□□□ -0.88
HMGB3-204ENST00000448905 SIGLEC15Q6ZMC9 328 aa9.58□□□□□ -0.88
HMGB3-204ENST00000448905 Q6ZRM9 215 aa9.58□□□□□ -0.88
HMGB3-204ENST00000448905 SLC24A4Q8NFF2 622 aa9.58□□□□□ -0.88
HMGB3-204ENST00000448905 OR13C8Q8NGS7 320 aa9.58□□□□□ -0.88
HMGB3-204ENST00000448905 MARCH1Q8TCQ1 289 aa9.58□□□□□ -0.88
HMGB3-204ENST00000448905 GLMPQ8WWB7 406 aa9.58□□□□□ -0.88
HMGB3-204ENST00000448905 NPIPB3Q92617 1050 aa9.58□□□□□ -0.88
HMGB3-204ENST00000448905 RBPMSQ93062 196 aaKnown RBP9.58□□□□□ -0.88
HMGB3-204ENST00000448905 KCNIP3Q9Y2W7 256 aa9.58□□□□□ -0.88
HMGB3-204ENST00000448905 TEX48A0A1B0GUV7 120 aa9.57□□□□□ -0.88
HMGB3-204ENST00000448905 BUB3O43684 328 aa9.57□□□□□ -0.88
HMGB3-204ENST00000448905 MED14OSP0DP75 135 aa9.57□□□□□ -0.88
HMGB3-204ENST00000448905 ZNF182P17025 639 aaPredicted RBP9.57□□□□□ -0.88
HMGB3-204ENST00000448905 NKX2-1P43699 371 aaPredicted RBP9.57□□□□□ -0.88
HMGB3-204ENST00000448905 MEF2DQ14814 521 aa9.57□□□□□ -0.88
HMGB3-204ENST00000448905 STEAP1BQ6NZ63 245 aa9.57□□□□□ -0.88
HMGB3-204ENST00000448905 ACY3Q96HD9 319 aa9.57□□□□□ -0.88
HMGB3-204ENST00000448905 FAM210BQ96KR6 192 aa9.57□□□□□ -0.88
HMGB3-204ENST00000448905 NEU1Q99519 415 aa9.57□□□□□ -0.88
HMGB3-204ENST00000448905 EXTL2Q9UBQ6 330 aa9.57□□□□□ -0.88
HMGB3-204ENST00000448905 CACNG5Q9UF02 275 aa9.57□□□□□ -0.88
HMGB3-204ENST00000448905 U3KQ87 197 aa9.57□□□□□ -0.88
HMGB3-204ENST00000448905 HECTD4Q9Y4D8 3996 aa9.56□□□□□ -0.88
HMGB3-204ENST00000448905 A0A0G2JRQ6 117 aa9.56□□□□□ -0.88
HMGB3-204ENST00000448905 PRSS29PA6NIE9 313 aa9.56□□□□□ -0.88
HMGB3-204ENST00000448905 DISC1C4P0D8 188 aa9.56□□□□□ -0.88
HMGB3-204ENST00000448905 TOMM40O96008 361 aa9.56□□□□□ -0.88
HMGB3-204ENST00000448905 CD74P04233 296 aa9.56□□□□□ -0.88
HMGB3-204ENST00000448905 FABP1P07148 127 aa9.56□□□□□ -0.88
HMGB3-204ENST00000448905 OR5AC1P0C628 307 aa9.56□□□□□ -0.88
HMGB3-204ENST00000448905 MRPS10P82664 201 aaKnown RBP9.56□□□□□ -0.88
HMGB3-204ENST00000448905 SSBP1Q04837 148 aaKnown RBP9.56□□□□□ -0.88
HMGB3-204ENST00000448905 KLF9Q13886 244 aaPredicted RBP9.56□□□□□ -0.88
HMGB3-204ENST00000448905 SURF2Q15527 256 aaPredicted RBP9.56□□□□□ -0.88
HMGB3-204ENST00000448905 SOHLH1Q5JUK2 328 aa9.56□□□□□ -0.88
HMGB3-204ENST00000448905 TMEM268Q5VZI3 342 aa9.56□□□□□ -0.88
HMGB3-204ENST00000448905 ZNF767PQ75MW2 155 aa9.56□□□□□ -0.88
HMGB3-204ENST00000448905 GLYATL2Q8WU03 294 aa9.56□□□□□ -0.88
HMGB3-204ENST00000448905 VPS13DQ5THJ4 4388 aa9.55□□□□□ -0.88
HMGB3-204ENST00000448905 GABARAPH6UMI1 98 aa9.55□□□□□ -0.88
HMGB3-204ENST00000448905 M0R2N4 97 aa9.55□□□□□ -0.88
HMGB3-204ENST00000448905 GABARAPO95166 117 aa9.55□□□□□ -0.88
HMGB3-204ENST00000448905 EMP1P54849 157 aa9.55□□□□□ -0.88
HMGB3-204ENST00000448905 ATP5IP56385 69 aaPredicted RBP9.55□□□□□ -0.88
HMGB3-204ENST00000448905 USF2Q15853 346 aaPredicted RBP9.55□□□□□ -0.88
HMGB3-204ENST00000448905 LGALS9BQ3B8N2 356 aa9.55□□□□□ -0.88
HMGB3-204ENST00000448905 SPATA31B1PQ5VZV4 182 aa9.55□□□□□ -0.88
HMGB3-204ENST00000448905 UBE2DNLQ8IWF7 75 aa9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms