RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 SIRT4Q9Y6E7 314 aaPredicted RBP6.05□□□□□ -1.44
VPS53-204ENST00000437048 THADAQ6YHU6 1953 aa6.05□□□□□ -1.44
VPS53-204ENST00000437048 SLC25A16P16260 332 aa6.05□□□□□ -1.44
VPS53-204ENST00000437048 KIR3DS1Q14943 382 aa6.05□□□□□ -1.44
VPS53-204ENST00000437048 LINC00477Q96M19 166 aa6.05□□□□□ -1.44
VPS53-204ENST00000437048 SELLP14151 372 aa6.05□□□□□ -1.44
VPS53-204ENST00000437048 DRD3P35462 400 aa6.05□□□□□ -1.44
VPS53-204ENST00000437048 PTCRAQ6ISU1 281 aaPredicted RBP6.05□□□□□ -1.44
VPS53-204ENST00000437048 C21orf62Q9NYP8 219 aa6.05□□□□□ -1.44
VPS53-204ENST00000437048 REPIN1Q9BWE0 567 aaKnown RBP6.05□□□□□ -1.44
VPS53-204ENST00000437048 CSPG4Q6UVK1 2322 aa6.05□□□□□ -1.44
VPS53-204ENST00000437048 FOXI3A8MTJ6 420 aaPredicted RBP6.05□□□□□ -1.44
VPS53-204ENST00000437048 DEFB103AP81534 67 aa6.05□□□□□ -1.44
VPS53-204ENST00000437048 J3QRE1 110 aa6.05□□□□□ -1.44
VPS53-204ENST00000437048 PSG4Q00888 419 aa6.05□□□□□ -1.44
VPS53-204ENST00000437048 TMEM14EPQ6UXP3 125 aa6.05□□□□□ -1.44
VPS53-204ENST00000437048 C8orf46Q8TAG6 207 aa6.05□□□□□ -1.44
VPS53-204ENST00000437048 RTBDNQ9BSG5 229 aaPredicted RBP6.05□□□□□ -1.44
VPS53-204ENST00000437048 DEFB127Q9H1M4 99 aa6.05□□□□□ -1.44
VPS53-204ENST00000437048 PEMTQ9UBM1 199 aa6.05□□□□□ -1.44
VPS53-204ENST00000437048 TRAV24A0A0B4J272 114 aa6.05□□□□□ -1.44
VPS53-204ENST00000437048 SSTR5P35346 364 aa6.05□□□□□ -1.44
VPS53-204ENST00000437048 LY6G6FQ5SQ64 297 aa6.05□□□□□ -1.44
VPS53-204ENST00000437048 UBR3Q6ZT12 1888 aa6.05□□□□□ -1.44
VPS53-204ENST00000437048 PIN1P1O15428 100 aa6.05□□□□□ -1.44
VPS53-204ENST00000437048 REG4Q9BYZ8 158 aa6.05□□□□□ -1.44
VPS53-204ENST00000437048 PILRAQ9UKJ1 303 aa6.05□□□□□ -1.44
VPS53-204ENST00000437048 ZG16O60844 167 aa6.05□□□□□ -1.44
VPS53-204ENST00000437048 MYF5P13349 255 aa6.05□□□□□ -1.44
VPS53-204ENST00000437048 LINC00114Q6XXX2 140 aa6.05□□□□□ -1.44
VPS53-204ENST00000437048 GLRX5Q86SX6 157 aa6.05□□□□□ -1.44
VPS53-204ENST00000437048 TRAV14DV4A0A0A6YYC5 116 aa6.04□□□□□ -1.44
VPS53-204ENST00000437048 EVI2AP22794 236 aa6.04□□□□□ -1.44
VPS53-204ENST00000437048 ATP5EP56381 51 aaPredicted RBP6.04□□□□□ -1.44
VPS53-204ENST00000437048 RFNGQ9Y644 331 aa6.04□□□□□ -1.44
VPS53-204ENST00000437048 Q9H3A6 140 aa6.04□□□□□ -1.44
VPS53-204ENST00000437048 SOCS3O14543 225 aa6.04□□□□□ -1.44
VPS53-204ENST00000437048 SCTP09683 121 aa6.04□□□□□ -1.44
VPS53-204ENST00000437048 K7EP34 96 aa6.04□□□□□ -1.44
VPS53-204ENST00000437048 ZIC3O60481 467 aa6.04□□□□□ -1.44
VPS53-204ENST00000437048 RAMP3O60896 148 aa6.04□□□□□ -1.44
VPS53-204ENST00000437048 C9orf139Q6ZV77 190 aa6.04□□□□□ -1.44
VPS53-204ENST00000437048 FNDC4Q9H6D8 234 aaPredicted RBP6.04□□□□□ -1.44
VPS53-204ENST00000437048 NDUFB8O95169 186 aa6.04□□□□□ -1.44
VPS53-204ENST00000437048 GAGE2AQ6NT46 116 aa6.04□□□□□ -1.44
VPS53-204ENST00000437048 WFDC1Q9HC57 220 aa6.04□□□□□ -1.44
VPS53-204ENST00000437048 DPM3Q9P2X0 92 aa6.04□□□□□ -1.44
VPS53-204ENST00000437048 SELENOKQ9Y6D0 94 aa6.04□□□□□ -1.44
VPS53-204ENST00000437048 ABCA2Q9BZC7 2435 aa6.04□□□□□ -1.44
VPS53-204ENST00000437048 CACNA1AO00555 2505 aa6.04□□□□□ -1.44
VPS53-204ENST00000437048 TOMM40O96008 361 aa6.04□□□□□ -1.44
VPS53-204ENST00000437048 FHL5Q5TD97 284 aa6.04□□□□□ -1.44
VPS53-204ENST00000437048 IGHV5-51A0A0C4DH38 117 aa6.04□□□□□ -1.44
VPS53-204ENST00000437048 KIAA1644Q3SXP7 199 aa6.04□□□□□ -1.44
VPS53-204ENST00000437048 WIPF2Q8TF74 440 aaPredicted RBP6.04□□□□□ -1.44
VPS53-204ENST00000437048 NEU4Q8WWR8 484 aaPredicted RBP6.04□□□□□ -1.44
VPS53-204ENST00000437048 CFHR5Q9BXR6 569 aa6.04□□□□□ -1.44
VPS53-204ENST00000437048 EDA2RQ9HAV5 297 aa6.04□□□□□ -1.44
VPS53-204ENST00000437048 IGHV3-20A0A0C4DH32 117 aa6.04□□□□□ -1.44
VPS53-204ENST00000437048 K7EP13 123 aa6.04□□□□□ -1.44
VPS53-204ENST00000437048 CLEC2AQ6UVW9 174 aa6.04□□□□□ -1.44
VPS53-204ENST00000437048 PLXNA3P51805 1871 aa6.03□□□□□ -1.44
VPS53-204ENST00000437048 SMIM10L1P0DMW3 83 aa6.03□□□□□ -1.44
VPS53-204ENST00000437048 LGALS9BQ3B8N2 356 aa6.03□□□□□ -1.44
VPS53-204ENST00000437048 CHCHD2P9Q5T1J5 151 aaPredicted RBP6.03□□□□□ -1.44
VPS53-204ENST00000437048 LGALS9CQ6DKI2 356 aa6.03□□□□□ -1.44
VPS53-204ENST00000437048 PPP1R27Q86WC6 154 aa6.03□□□□□ -1.44
VPS53-204ENST00000437048 SLC25A28Q96A46 364 aa6.03□□□□□ -1.44
VPS53-204ENST00000437048 SMIM10Q96HG1 83 aa6.03□□□□□ -1.44
VPS53-204ENST00000437048 RPUSD1Q9UJJ7 312 aaKnown RBP6.03□□□□□ -1.44
VPS53-204ENST00000437048 CT62P0C5K7 136 aa6.03□□□□□ -1.44
VPS53-204ENST00000437048 PRR31Q5SQ13 230 aa6.03□□□□□ -1.44
VPS53-204ENST00000437048 TMEM171Q8WVE6 324 aa6.03□□□□□ -1.44
VPS53-204ENST00000437048 C1QTNF4Q9BXJ3 329 aa6.03□□□□□ -1.44
VPS53-204ENST00000437048 BTCP35070 178 aa6.03□□□□□ -1.44
VPS53-204ENST00000437048 ACP7Q6ZNF0 438 aa6.03□□□□□ -1.44
VPS53-204ENST00000437048 NRXN2Q9P2S2 1712 aa6.03□□□□□ -1.44
VPS53-204ENST00000437048 LOC101059915A0A1B0GWI6 518 aaPredicted RBP6.03□□□□□ -1.44
VPS53-204ENST00000437048 COX7A1P24310 79 aa6.03□□□□□ -1.44
VPS53-204ENST00000437048 ADMP35318 185 aa6.03□□□□□ -1.44
VPS53-204ENST00000437048 YPEL3P61236 119 aaPredicted RBP6.03□□□□□ -1.44
VPS53-204ENST00000437048 PRR7Q8TB68 274 aa6.03□□□□□ -1.44
VPS53-204ENST00000437048 CD69Q07108 199 aa6.03□□□□□ -1.44
VPS53-204ENST00000437048 MESP1Q9BRJ9 268 aa6.03□□□□□ -1.44
VPS53-204ENST00000437048 BRCA1P38398 1863 aaKnown RBP6.03□□□□□ -1.44
VPS53-204ENST00000437048 TICRRQ7Z2Z1 1910 aa6.03□□□□□ -1.44
VPS53-204ENST00000437048 TIMM23O14925 209 aa6.03□□□□□ -1.44
VPS53-204ENST00000437048 IGHV3-15A0A0B4J1V0 119 aa6.03□□□□□ -1.44
VPS53-204ENST00000437048 COX8AP10176 69 aa6.03□□□□□ -1.44
VPS53-204ENST00000437048 CDCP2Q5VXM1 449 aa6.03□□□□□ -1.44
VPS53-204ENST00000437048 BEX4Q9NWD9 120 aaPredicted RBP6.03□□□□□ -1.44
VPS53-204ENST00000437048 EFNB3Q15768 340 aa6.02□□□□□ -1.44
VPS53-204ENST00000437048 GCSAMLQ5JQS6 135 aa6.02□□□□□ -1.44
VPS53-204ENST00000437048 GAGE12HA6NDE8 117 aa6.02□□□□□ -1.45
VPS53-204ENST00000437048 C22orf46C9J442 243 aa6.02□□□□□ -1.45
VPS53-204ENST00000437048 SIGLEC8Q9NYZ4 499 aa6.02□□□□□ -1.45
VPS53-204ENST00000437048 MRPL23Q16540 153 aaKnown RBP6.02□□□□□ -1.45
VPS53-204ENST00000437048 ZIC4Q8N9L1 334 aa6.02□□□□□ -1.45
VPS53-204ENST00000437048 RNF125Q96EQ8 232 aa6.02□□□□□ -1.45
VPS53-204ENST00000437048 IGHV2OR16-5A0A0B4J2B6 119 aa6.02□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 71.3 ms