RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 PSG2P11465 335 aa8.11□□□□□ -1.11
USP54-205ENST00000424265 GNLYP22749 145 aa8.11□□□□□ -1.11
USP54-205ENST00000424265 TMEM50BP56557 158 aa8.11□□□□□ -1.11
USP54-205ENST00000424265 BSPH1Q075Z2 132 aa8.11□□□□□ -1.11
USP54-205ENST00000424265 PSG5Q15238 335 aa8.11□□□□□ -1.11
USP54-205ENST00000424265 ZNF837Q96EG3 531 aaPredicted RBP8.11□□□□□ -1.11
USP54-205ENST00000424265 C18orf12Q96KH6 178 aa8.11□□□□□ -1.11
USP54-205ENST00000424265 PPDPFQ9H3Y8 114 aa8.11□□□□□ -1.11
USP54-205ENST00000424265 SPANXB1Q9NS25 103 aaPredicted RBP8.11□□□□□ -1.11
USP54-205ENST00000424265 TP53TG3Q9ULZ0 132 aa8.11□□□□□ -1.11
USP54-205ENST00000424265 SPTBN2O15020 2390 aa8.11□□□□□ -1.11
USP54-205ENST00000424265 CACNA1CQ13936 2221 aa8.1□□□□□ -1.11
USP54-205ENST00000424265 CUL9Q8IWT3 2517 aa8.1□□□□□ -1.11
USP54-205ENST00000424265 H3BVH4 76 aa8.1□□□□□ -1.11
USP54-205ENST00000424265 CFPP27918 469 aa8.1□□□□□ -1.11
USP54-205ENST00000424265 PDLIM3Q53GG5 364 aaPredicted RBP8.1□□□□□ -1.11
USP54-205ENST00000424265 C6orf201Q7Z4U5 140 aa8.1□□□□□ -1.11
USP54-205ENST00000424265 OR9G4Q8NGQ1 327 aa8.1□□□□□ -1.11
USP54-205ENST00000424265 SYS1-DBNDD2H3BUS1 97 aa8.1□□□□□ -1.11
USP54-205ENST00000424265 IGFBP7Q16270 282 aa8.1□□□□□ -1.11
USP54-205ENST00000424265 DEFB108BQ8NET1 73 aa8.1□□□□□ -1.11
USP54-205ENST00000424265 S1PR3Q99500 378 aa8.1□□□□□ -1.11
USP54-205ENST00000424265 RNF114Q9Y508 228 aa8.1□□□□□ -1.11
USP54-205ENST00000424265 PRSS29PA6NIE9 313 aa8.1□□□□□ -1.11
USP54-205ENST00000424265 NGFP01138 241 aa8.1□□□□□ -1.11
USP54-205ENST00000424265 C20orf204Q6ZNR8 217 aa8.1□□□□□ -1.11
USP54-205ENST00000424265 Q6ZUT4 128 aa8.1□□□□□ -1.11
USP54-205ENST00000424265 LHFPL1Q86WI0 220 aa8.1□□□□□ -1.11
USP54-205ENST00000424265 ZNF502Q8TBZ5 544 aa8.1□□□□□ -1.11
USP54-205ENST00000424265 NEUROG1Q92886 237 aa8.1□□□□□ -1.11
USP54-205ENST00000424265 TNRC6AQ8NDV7 1962 aaKnown RBP8.1□□□□□ -1.11
USP54-205ENST00000424265 IGHV1-18A0A0C4DH31 117 aa8.1□□□□□ -1.11
USP54-205ENST00000424265 CSN1S1P47710 185 aa8.1□□□□□ -1.11
USP54-205ENST00000424265 UNC119Q13432 240 aa8.1□□□□□ -1.11
USP54-205ENST00000424265 WFDC2Q14508 124 aa8.1□□□□□ -1.11
USP54-205ENST00000424265 FAM166AQ6J272 317 aa8.1□□□□□ -1.11
USP54-205ENST00000424265 LINC01560Q8TB33 94 aa8.1□□□□□ -1.11
USP54-205ENST00000424265 GATAD1Q8WUU5 269 aa8.1□□□□□ -1.11
USP54-205ENST00000424265 AMMECR1Q9Y4X0 333 aaPredicted RBP8.1□□□□□ -1.11
USP54-205ENST00000424265 ACTL6BO94805 426 aa8.09□□□□□ -1.11
USP54-205ENST00000424265 IGKV3-15P01624 115 aa8.09□□□□□ -1.11
USP54-205ENST00000424265 COX8AP10176 69 aa8.09□□□□□ -1.11
USP54-205ENST00000424265 SCRT2Q9NQ03 307 aa8.09□□□□□ -1.11
USP54-205ENST00000424265 PAX9P55771 341 aa8.09□□□□□ -1.11
USP54-205ENST00000424265 RASL11AQ6T310 242 aa8.09□□□□□ -1.11
USP54-205ENST00000424265 SPATA12Q7Z6I5 190 aa8.09□□□□□ -1.11
USP54-205ENST00000424265 FAM215AQ9Y5M1 114 aa8.09□□□□□ -1.11
USP54-205ENST00000424265 CEACAM18A8MTB9 384 aa8.09□□□□□ -1.11
USP54-205ENST00000424265 PRR32B1ATL7 298 aa8.09□□□□□ -1.11
USP54-205ENST00000424265 J3KT08 172 aa8.09□□□□□ -1.11
USP54-205ENST00000424265 HSPB6O14558 160 aa8.09□□□□□ -1.11
USP54-205ENST00000424265 CAMPP49913 170 aa8.09□□□□□ -1.11
USP54-205ENST00000424265 CEP250Q9BV73 2442 aa8.09□□□□□ -1.11
USP54-205ENST00000424265 A0A1W2PRD5 423 aa8.09□□□□□ -1.11
USP54-205ENST00000424265 A0A1W2PRF3 423 aa8.09□□□□□ -1.11
USP54-205ENST00000424265 A0A1W2PRM7 423 aa8.09□□□□□ -1.11
USP54-205ENST00000424265 OOEPA6NGQ2 149 aa8.09□□□□□ -1.11
USP54-205ENST00000424265 SRSF10O75494 262 aaKnown RBP8.09□□□□□ -1.11
USP54-205ENST00000424265 IGHV3-13P01766 116 aa8.09□□□□□ -1.11
USP54-205ENST00000424265 OSR1Q8TAX0 266 aaPredicted RBP8.09□□□□□ -1.11
USP54-205ENST00000424265 PIEZO1Q92508 2521 aa8.09□□□□□ -1.11
USP54-205ENST00000424265 MGST3O14880 152 aa8.08□□□□□ -1.12
USP54-205ENST00000424265 BCL3P20749 454 aa8.08□□□□□ -1.12
USP54-205ENST00000424265 TAF15Q92804 592 aaKnown RBP eCLIP8.08□□□□□ -1.12
USP54-205ENST00000424265 NHP2Q9NX24 153 aaKnown RBP8.08□□□□□ -1.12
USP54-205ENST00000424265 ZNF474Q6S9Z5 364 aaPredicted RBP8.08□□□□□ -1.12
USP54-205ENST00000424265 TP73-AS1Q9UF72 201 aa8.08□□□□□ -1.12
USP54-205ENST00000424265 RABAC1Q9UI14 185 aa8.08□□□□□ -1.12
USP54-205ENST00000424265 FCGR2BP31994 310 aaPredicted RBP8.08□□□□□ -1.12
USP54-205ENST00000424265 DMRTC1Q5HYR2 192 aa8.08□□□□□ -1.12
USP54-205ENST00000424265 ITLN1Q8WWA0 313 aa8.08□□□□□ -1.12
USP54-205ENST00000424265 TXNDC17Q9BRA2 123 aa8.08□□□□□ -1.12
USP54-205ENST00000424265 APC2O95996 2303 aa8.08□□□□□ -1.12
USP54-205ENST00000424265 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP8.08□□□□□ -1.12
USP54-205ENST00000424265 LIN7CQ9NUP9 197 aaKnown RBP8.08□□□□□ -1.12
USP54-205ENST00000424265 CCDC179H3BU77 68 aa8.07□□□□□ -1.12
USP54-205ENST00000424265 CHEK1O14757 476 aa8.07□□□□□ -1.12
USP54-205ENST00000424265 GLMPQ8WWB7 406 aa8.07□□□□□ -1.12
USP54-205ENST00000424265 FOXI2Q6ZQN5 318 aa8.07□□□□□ -1.12
USP54-205ENST00000424265 GCSAMQ8N6F7 178 aa8.07□□□□□ -1.12
USP54-205ENST00000424265 PRELID3AQ96N28 172 aa8.07□□□□□ -1.12
USP54-205ENST00000424265 C20orf78Q9BR46 151 aa8.07□□□□□ -1.12
USP54-205ENST00000424265 IGHV3-7P01780 117 aa8.07□□□□□ -1.12
USP54-205ENST00000424265 IGFBP3P17936 291 aaPredicted RBP8.07□□□□□ -1.12
USP54-205ENST00000424265 EVI2AP22794 236 aa8.07□□□□□ -1.12
USP54-205ENST00000424265 DSCR9P59020 149 aa8.07□□□□□ -1.12
USP54-205ENST00000424265 PDCD1Q15116 288 aa8.07□□□□□ -1.12
USP54-205ENST00000424265 PRR30Q53SZ7 412 aaPredicted RBP8.07□□□□□ -1.12
USP54-205ENST00000424265 A0A1W2PRE2 83 aa8.07□□□□□ -1.12
USP54-205ENST00000424265 C17orf100A8MU93 164 aa8.07□□□□□ -1.12
USP54-205ENST00000424265 F5H768 121 aa8.07□□□□□ -1.12
USP54-205ENST00000424265 KIR2DS2P43631 304 aa8.07□□□□□ -1.12
USP54-205ENST00000424265 ATP5G3P48201 142 aa8.07□□□□□ -1.12
USP54-205ENST00000424265 PSG7Q13046 419 aa8.07□□□□□ -1.12
USP54-205ENST00000424265 GUSBP1Q15486 140 aa8.07□□□□□ -1.12
USP54-205ENST00000424265 EBLN2Q6P2I7 272 aa8.07□□□□□ -1.12
USP54-205ENST00000424265 TBC1D26Q86UD7 250 aa8.07□□□□□ -1.12
USP54-205ENST00000424265 WDR31Q8NA23 367 aa8.07□□□□□ -1.12
USP54-205ENST00000424265 NRGNQ92686 78 aa8.07□□□□□ -1.12
USP54-205ENST00000424265 CCL19Q99731 98 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms