RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 CMPK1P30085 196 aa2.71□□□□□ -1.98
VPS54-204ENST00000416400 AKR1C3P42330 323 aa2.71□□□□□ -1.98
VPS54-204ENST00000416400 TMEM33P57088 247 aa2.71□□□□□ -1.98
VPS54-204ENST00000416400 MAXP61244 160 aa2.71□□□□□ -1.98
VPS54-204ENST00000416400 RHOGP84095 191 aa2.71□□□□□ -1.98
VPS54-204ENST00000416400 ZNF117Q03924 483 aa2.71□□□□□ -1.98
VPS54-204ENST00000416400 IL15RAQ13261 267 aa2.71□□□□□ -1.98
VPS54-204ENST00000416400 PPP1R1AQ13522 171 aa2.71□□□□□ -1.98
VPS54-204ENST00000416400 MOBPQ13875 183 aa2.71□□□□□ -1.98
VPS54-204ENST00000416400 IHHQ14623 411 aa2.71□□□□□ -1.98
VPS54-204ENST00000416400 INSL4Q14641 139 aa2.71□□□□□ -1.98
VPS54-204ENST00000416400 PMVKQ15126 192 aa2.71□□□□□ -1.98
VPS54-204ENST00000416400 MPV17LQ2QL34 196 aa2.71□□□□□ -1.98
VPS54-204ENST00000416400 SMIM21Q3B7S5 101 aa2.71□□□□□ -1.98
VPS54-204ENST00000416400 PDZD11Q5EBL8 140 aa2.71□□□□□ -1.98
VPS54-204ENST00000416400 CLEC12AQ5QGZ9 265 aa2.71□□□□□ -1.98
VPS54-204ENST00000416400 FAM162BQ5T6X4 162 aa2.71□□□□□ -1.98
VPS54-204ENST00000416400 RPL7L1Q6DKI1 246 aaKnown RBP2.71□□□□□ -1.98
VPS54-204ENST00000416400 NIT1Q86X76 327 aa2.71□□□□□ -1.98
VPS54-204ENST00000416400 TMEM156Q8N614 296 aa2.71□□□□□ -1.98
VPS54-204ENST00000416400 ZNF709Q8N972 641 aa2.71□□□□□ -1.98
VPS54-204ENST00000416400 SPANXA2-OT1Q8N9U9 137 aa2.71□□□□□ -1.98
VPS54-204ENST00000416400 APCDD1LQ8NCL9 501 aa2.71□□□□□ -1.98
VPS54-204ENST00000416400 OR51D1Q8NGF3 324 aa2.71□□□□□ -1.98
VPS54-204ENST00000416400 OR5A2Q8NGI9 324 aa2.71□□□□□ -1.98
VPS54-204ENST00000416400 OR8S1Q8NH09 359 aa2.71□□□□□ -1.98
VPS54-204ENST00000416400 FNDC9Q8TBE3 224 aa2.71□□□□□ -1.98
VPS54-204ENST00000416400 CASTOR1Q8WTX7 329 aa2.71□□□□□ -1.98
VPS54-204ENST00000416400 TSLPQ969D9 159 aa2.71□□□□□ -1.98
VPS54-204ENST00000416400 DDIT4LQ96D03 193 aa2.71□□□□□ -1.98
VPS54-204ENST00000416400 SLC35G5Q96KT7 338 aa2.71□□□□□ -1.98
VPS54-204ENST00000416400 OR7D2Q96RA2 312 aa2.71□□□□□ -1.98
VPS54-204ENST00000416400 FAAP24Q9BTP7 215 aa2.71□□□□□ -1.98
VPS54-204ENST00000416400 EBPLQ9BY08 206 aa2.71□□□□□ -1.98
VPS54-204ENST00000416400 PRORYQ9H606 182 aa2.71□□□□□ -1.98
VPS54-204ENST00000416400 CBLN4Q9NTU7 201 aa2.71□□□□□ -1.98
VPS54-204ENST00000416400 TMEM106BQ9NUM4 274 aa2.71□□□□□ -1.98
VPS54-204ENST00000416400 SLC23A2Q9UGH3 650 aa2.71□□□□□ -1.98
VPS54-204ENST00000416400 C14orf166Q9Y224 244 aaKnown RBP2.71□□□□□ -1.98
VPS54-204ENST00000416400 LAMTOR2Q9Y2Q5 125 aa2.71□□□□□ -1.98
VPS54-204ENST00000416400 FER1L6Q2WGJ9 1857 aa2.71□□□□□ -1.98
VPS54-204ENST00000416400 ZFC3H1O60293 1989 aaKnown RBP2.7□□□□□ -1.98
VPS54-204ENST00000416400 SCN9AQ15858 1988 aa2.7□□□□□ -1.98
VPS54-204ENST00000416400 SSC5DA1L4H1 1573 aa2.7□□□□□ -1.98
VPS54-204ENST00000416400 LOXHD1Q8IVV2 1947 aa2.7□□□□□ -1.98
VPS54-204ENST00000416400 LAMB2P55268 1798 aa2.7□□□□□ -1.98
VPS54-204ENST00000416400 IGLV3-12A0A075B6K2 115 aa2.7□□□□□ -1.98
VPS54-204ENST00000416400 A0A1B0GW15 77 aa2.7□□□□□ -1.98
VPS54-204ENST00000416400 DUXBA0A1W2PPF3 345 aa2.7□□□□□ -1.98
VPS54-204ENST00000416400 C9JQL5 133 aa2.7□□□□□ -1.98
VPS54-204ENST00000416400 H7BYZ3 331 aa2.7□□□□□ -1.98
VPS54-204ENST00000416400 HMGN4O00479 90 aa2.7□□□□□ -1.98
VPS54-204ENST00000416400 CCL22O00626 93 aa2.7□□□□□ -1.98
VPS54-204ENST00000416400 CCL25O15444 150 aa2.7□□□□□ -1.98
VPS54-204ENST00000416400 OR7C2O60412 319 aa2.7□□□□□ -1.98
VPS54-204ENST00000416400 DEDDO75618 318 aa2.7□□□□□ -1.98
VPS54-204ENST00000416400 NDUFB2O95178 105 aa2.7□□□□□ -1.98
VPS54-204ENST00000416400 MAS1P04201 325 aa2.7□□□□□ -1.98
VPS54-204ENST00000416400 CXCL1P09341 107 aa2.7□□□□□ -1.98
VPS54-204ENST00000416400 ESDP10768 282 aa2.7□□□□□ -1.98
VPS54-204ENST00000416400 CD99P14209 185 aa2.7□□□□□ -1.98
VPS54-204ENST00000416400 HMGA1P17096 107 aaKnown RBP2.7□□□□□ -1.98
VPS54-204ENST00000416400 CMC4P56277 68 aaPredicted RBP2.7□□□□□ -1.98
VPS54-204ENST00000416400 RPS11P62280 158 aaKnown RBP eCLIP2.7□□□□□ -1.98
VPS54-204ENST00000416400 SLC9A3R2Q15599 337 aa2.7□□□□□ -1.98
VPS54-204ENST00000416400 PLPPR5Q32ZL2 321 aa2.7□□□□□ -1.98
VPS54-204ENST00000416400 LUZP6Q538Z0 58 aa2.7□□□□□ -1.98
VPS54-204ENST00000416400 ACTL10Q5JWF8 245 aa2.7□□□□□ -1.98
VPS54-204ENST00000416400 FAM222AQ5U5X8 452 aa2.7□□□□□ -1.98
VPS54-204ENST00000416400 SAMD13Q5VXD3 122 aa2.7□□□□□ -1.98
VPS54-204ENST00000416400 AGTRAPQ6RW13 159 aa2.7□□□□□ -1.98
VPS54-204ENST00000416400 FAM151BQ6UXP7 276 aa2.7□□□□□ -1.98
VPS54-204ENST00000416400 CLEC19AQ6UXS0 136 aa2.7□□□□□ -1.98
VPS54-204ENST00000416400 NEGR1Q7Z3B1 354 aa2.7□□□□□ -1.98
VPS54-204ENST00000416400 ORMDL3Q8N138 153 aa2.7□□□□□ -1.98
VPS54-204ENST00000416400 ZNF676Q8N7Q3 588 aa2.7□□□□□ -1.98
VPS54-204ENST00000416400 SIGLECL1Q8N7X8 197 aa2.7□□□□□ -1.98
VPS54-204ENST00000416400 OR2T10Q8NGZ9 312 aa2.7□□□□□ -1.98
VPS54-204ENST00000416400 OR4K13Q8NH42 304 aa2.7□□□□□ -1.98
VPS54-204ENST00000416400 FAM213BQ8TBF2 198 aa2.7□□□□□ -1.98
VPS54-204ENST00000416400 TMEM239Q8WW34 195 aa2.7□□□□□ -1.98
VPS54-204ENST00000416400 AP1S3Q96PC3 154 aa2.7□□□□□ -1.98
VPS54-204ENST00000416400 TBX5Q99593 518 aa2.7□□□□□ -1.98
VPS54-204ENST00000416400 SIGMAR1Q99720 223 aa2.7□□□□□ -1.98
VPS54-204ENST00000416400 PMCHL2Q9BQD1 86 aa2.7□□□□□ -1.98
VPS54-204ENST00000416400 SCRT1Q9BWW7 348 aa2.7□□□□□ -1.98
VPS54-204ENST00000416400 PLA2G12AQ9BZM1 189 aa2.7□□□□□ -1.98
VPS54-204ENST00000416400 CST9LQ9H4G1 147 aa2.7□□□□□ -1.98
VPS54-204ENST00000416400 GPR84Q9NQS5 396 aa2.7□□□□□ -1.98
VPS54-204ENST00000416400 ZNF586Q9NXT0 402 aa2.7□□□□□ -1.98
VPS54-204ENST00000416400 SMPXQ9UHP9 88 aa2.7□□□□□ -1.98
VPS54-204ENST00000416400 ANXA10Q9UJ72 324 aa2.7□□□□□ -1.98
VPS54-204ENST00000416400 SLC22A13Q9Y226 551 aa2.7□□□□□ -1.98
VPS54-204ENST00000416400 S4R3C0 116 aa2.7□□□□□ -1.98
VPS54-204ENST00000416400 TANC1Q9C0D5 1861 aa2.7□□□□□ -1.98
VPS54-204ENST00000416400 SCN1AP35498 2009 aa2.69□□□□□ -1.98
VPS54-204ENST00000416400 RGPD2P0DJD1 1756 aa2.69□□□□□ -1.98
VPS54-204ENST00000416400 LOC102724200A0A096LPH7 203 aaPredicted RBP2.69□□□□□ -1.98
VPS54-204ENST00000416400 IGHV1-69-2A0A0G2JMI3 117 aa2.69□□□□□ -1.98
VPS54-204ENST00000416400 ARL5CA6NH57 179 aa2.69□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms