RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 A0A1W2PPI3 338 aa11.25□□□□□ -0.61
CCDC88A-204ENST00000413716 A0A1W2PRE2 83 aa11.25□□□□□ -0.61
CCDC88A-204ENST00000413716 RPL39P5Q59GN2 51 aa11.25□□□□□ -0.61
CCDC88A-204ENST00000413716 SRD5A1P18405 259 aa11.25□□□□□ -0.61
CCDC88A-204ENST00000413716 PSG3Q16557 428 aa11.25□□□□□ -0.61
CCDC88A-204ENST00000413716 AHRRA9YTQ3 701 aa11.25□□□□□ -0.61
CCDC88A-204ENST00000413716 PSG1P11464 419 aa11.25□□□□□ -0.61
CCDC88A-204ENST00000413716 Q96M66 194 aa11.25□□□□□ -0.61
CCDC88A-204ENST00000413716 MED13Q9UHV7 2174 aa11.25□□□□□ -0.61
CCDC88A-204ENST00000413716 LOC105371267A0A1B0GV96 52 aa11.25□□□□□ -0.61
CCDC88A-204ENST00000413716 CXCL16Q9H2A7 254 aa11.25□□□□□ -0.61
CCDC88A-204ENST00000413716 SRP19P09132 144 aaKnown RBP11.25□□□□□ -0.61
CCDC88A-204ENST00000413716 HOXB3P14651 431 aaPredicted RBP11.25□□□□□ -0.61
CCDC88A-204ENST00000413716 UPK3AO75631 287 aa11.24□□□□□ -0.61
CCDC88A-204ENST00000413716 SS18Q15532 418 aa11.24□□□□□ -0.61
CCDC88A-204ENST00000413716 MMP23AO75900 390 aa11.24□□□□□ -0.61
CCDC88A-204ENST00000413716 ZP4Q12836 540 aa11.24□□□□□ -0.61
CCDC88A-204ENST00000413716 NKAPP1Q8N9T2 125 aa11.24□□□□□ -0.61
CCDC88A-204ENST00000413716 NABP1Q96AH0 204 aa11.24□□□□□ -0.61
CCDC88A-204ENST00000413716 SMAD7O15105 426 aaKnown RBP11.24□□□□□ -0.61
CCDC88A-204ENST00000413716 THAP8Q8NA92 274 aa11.24□□□□□ -0.61
CCDC88A-204ENST00000413716 A0A087X0K7 114 aa11.24□□□□□ -0.61
CCDC88A-204ENST00000413716 FAM90A9PA6NNJ1 464 aa11.24□□□□□ -0.61
CCDC88A-204ENST00000413716 UTF1Q5T230 341 aa11.24□□□□□ -0.61
CCDC88A-204ENST00000413716 CFHR5Q9BXR6 569 aa11.24□□□□□ -0.61
CCDC88A-204ENST00000413716 S4R3C0 116 aa11.24□□□□□ -0.61
CCDC88A-204ENST00000413716 SCN10AQ9Y5Y9 1956 aa11.24□□□□□ -0.61
CCDC88A-204ENST00000413716 GNG5P63218 68 aa11.24□□□□□ -0.61
CCDC88A-204ENST00000413716 KIAA1549Q9HCM3 1950 aa11.24□□□□□ -0.61
CCDC88A-204ENST00000413716 BHLHA9Q7RTU4 235 aa11.24□□□□□ -0.61
CCDC88A-204ENST00000413716 NCOA6Q14686 2063 aaPredicted RBP11.24□□□□□ -0.61
CCDC88A-204ENST00000413716 HLA-DQB1P01920 261 aa11.24□□□□□ -0.61
CCDC88A-204ENST00000413716 CCL20P78556 96 aa11.24□□□□□ -0.61
CCDC88A-204ENST00000413716 OR13A1Q8NGR1 328 aa11.24□□□□□ -0.61
CCDC88A-204ENST00000413716 BAALCQ8WXS3 180 aa11.24□□□□□ -0.61
CCDC88A-204ENST00000413716 RASL11AQ6T310 242 aa11.23□□□□□ -0.61
CCDC88A-204ENST00000413716 IGHV3OR16-10A0A075B7F0 116 aa11.23□□□□□ -0.61
CCDC88A-204ENST00000413716 TRAV13-1A0A0B4J241 112 aa11.23□□□□□ -0.61
CCDC88A-204ENST00000413716 B9A039 149 aa11.23□□□□□ -0.61
CCDC88A-204ENST00000413716 IGHV5-10-1A0A0J9YXX1 117 aa11.23□□□□□ -0.61
CCDC88A-204ENST00000413716 RPL34P49207 117 aaKnown RBP11.23□□□□□ -0.61
CCDC88A-204ENST00000413716 SLC25A48Q6ZT89 311 aaKnown RBP11.23□□□□□ -0.61
CCDC88A-204ENST00000413716 C9orf40Q8IXQ3 194 aa11.23□□□□□ -0.61
CCDC88A-204ENST00000413716 PPP1R3EQ9H7J1 279 aa11.23□□□□□ -0.61
CCDC88A-204ENST00000413716 DLEU1O43261 78 aa11.23□□□□□ -0.61
CCDC88A-204ENST00000413716 IGHG4P01861 327 aa11.23□□□□□ -0.61
CCDC88A-204ENST00000413716 KLF14Q8TD94 323 aaPredicted RBP11.23□□□□□ -0.61
CCDC88A-204ENST00000413716 TRBV5-5A0A0J9YX44 114 aa11.23□□□□□ -0.61
CCDC88A-204ENST00000413716 ZXDCQ2QGD7 858 aaPredicted RBP11.23□□□□□ -0.61
CCDC88A-204ENST00000413716 SIGLEC15Q6ZMC9 328 aa11.23□□□□□ -0.61
CCDC88A-204ENST00000413716 TRPM3Q9HCF6 1732 aaPredicted RBP11.23□□□□□ -0.61
CCDC88A-204ENST00000413716 ATP5G3P48201 142 aa11.23□□□□□ -0.61
CCDC88A-204ENST00000413716 OSTCQ9NRP0 149 aa11.23□□□□□ -0.61
CCDC88A-204ENST00000413716 ZNF708P17019 499 aa11.22□□□□□ -0.61
CCDC88A-204ENST00000413716 HIST1H2BLQ99880 126 aa11.22□□□□□ -0.61
CCDC88A-204ENST00000413716 ACTL10Q5JWF8 245 aa11.22□□□□□ -0.61
CCDC88A-204ENST00000413716 PVRIGQ6DKI7 326 aa11.22□□□□□ -0.61
CCDC88A-204ENST00000413716 MIR17HGQ75NE6 70 aa11.22□□□□□ -0.61
CCDC88A-204ENST00000413716 ATP6V0BQ99437 205 aa11.22□□□□□ -0.61
CCDC88A-204ENST00000413716 NAA38Q9BRA0 125 aaKnown RBP11.22□□□□□ -0.61
CCDC88A-204ENST00000413716 NEGR1Q7Z3B1 354 aa11.22□□□□□ -0.61
CCDC88A-204ENST00000413716 TSKUQ8WUA8 353 aa11.22□□□□□ -0.61
CCDC88A-204ENST00000413716 OR9G9P0C7N8 305 aa11.22□□□□□ -0.61
CCDC88A-204ENST00000413716 UBR3Q6ZT12 1888 aa11.22□□□□□ -0.61
CCDC88A-204ENST00000413716 PRSS23O95084 383 aa11.22□□□□□ -0.61
CCDC88A-204ENST00000413716 RPL23P62829 140 aaKnown RBP11.22□□□□□ -0.61
CCDC88A-204ENST00000413716 PRB3Q04118 309 aaPredicted RBP11.21□□□□□ -0.61
CCDC88A-204ENST00000413716 KIAA0040Q15053 153 aa11.21□□□□□ -0.61
CCDC88A-204ENST00000413716 ZIC4Q8N9L1 334 aa11.21□□□□□ -0.61
CCDC88A-204ENST00000413716 UPK2O00526 184 aa11.21□□□□□ -0.61
CCDC88A-204ENST00000413716 ZNF703Q9H7S9 590 aaPredicted RBP11.21□□□□□ -0.61
CCDC88A-204ENST00000413716 MRPS18AQ9NVS2 196 aaKnown RBP11.21□□□□□ -0.61
CCDC88A-204ENST00000413716 NHSQ6T4R5 1651 aa11.21□□□□□ -0.62
CCDC88A-204ENST00000413716 HAMPP81172 84 aa11.21□□□□□ -0.62
CCDC88A-204ENST00000413716 PPDPFLQ8WWR9 84 aa11.21□□□□□ -0.62
CCDC88A-204ENST00000413716 WFDC6Q9BQY6 131 aa11.21□□□□□ -0.62
CCDC88A-204ENST00000413716 RPUSD1Q9UJJ7 312 aaKnown RBP11.21□□□□□ -0.62
CCDC88A-204ENST00000413716 TRAV14DV4A0A0A6YYC5 116 aa11.21□□□□□ -0.62
CCDC88A-204ENST00000413716 EML5Q05BV3 1969 aa11.2□□□□□ -0.62
CCDC88A-204ENST00000413716 RFLNBQ8N5W9 214 aa11.2□□□□□ -0.62
CCDC88A-204ENST00000413716 DSCAML1Q8TD84 2053 aa11.2□□□□□ -0.62
CCDC88A-204ENST00000413716 KIAA1551Q9HCM1 1747 aa11.2□□□□□ -0.62
CCDC88A-204ENST00000413716 LOC102723996A0A087X1L8 192 aa11.2□□□□□ -0.62
CCDC88A-204ENST00000413716 TRAV25A0A0B4J276 109 aa11.2□□□□□ -0.62
CCDC88A-204ENST00000413716 D6R8Y8 96 aa11.2□□□□□ -0.62
CCDC88A-204ENST00000413716 HRKO00198 91 aa11.2□□□□□ -0.62
CCDC88A-204ENST00000413716 ZPLD1Q8TCW7 415 aa11.2□□□□□ -0.62
CCDC88A-204ENST00000413716 OBSL1O75147 1896 aa11.2□□□□□ -0.62
CCDC88A-204ENST00000413716 CD160O95971 181 aa11.2□□□□□ -0.62
CCDC88A-204ENST00000413716 ZIC1Q15915 447 aa11.2□□□□□ -0.62
CCDC88A-204ENST00000413716 PRIMA1Q86XR5 153 aa11.2□□□□□ -0.62
CCDC88A-204ENST00000413716 RNF125Q96EQ8 232 aa11.2□□□□□ -0.62
CCDC88A-204ENST00000413716 DUSP15Q9H1R2 295 aaPredicted RBP11.2□□□□□ -0.62
CCDC88A-204ENST00000413716 CD5P06127 495 aa11.2□□□□□ -0.62
CCDC88A-204ENST00000413716 ZNF721Q8TF20 911 aa11.2□□□□□ -0.62
CCDC88A-204ENST00000413716 VN1R4Q7Z5H5 301 aa11.2□□□□□ -0.62
CCDC88A-204ENST00000413716 TBX6O95947 436 aaPredicted RBP11.2□□□□□ -0.62
CCDC88A-204ENST00000413716 RCHY1Q96PM5 261 aa11.2□□□□□ -0.62
CCDC88A-204ENST00000413716 RPL36AP83881 106 aaKnown RBP11.19□□□□□ -0.62
CCDC88A-204ENST00000413716 RPL36ALQ969Q0 106 aaKnown RBP11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms