RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 ACTL10Q5JWF8 245 aa9.9□□□□□ -0.82
HMGB1-206ENST00000405805 HCP5Q6MZN7 132 aa9.9□□□□□ -0.82
HMGB1-206ENST00000405805 ST20Q9HBF5 79 aa9.9□□□□□ -0.82
HMGB1-206ENST00000405805 PLSCR4Q9NRQ2 329 aa9.9□□□□□ -0.82
HMGB1-206ENST00000405805 ZGRF1Q86YA3 2104 aa9.9□□□□□ -0.82
HMGB1-206ENST00000405805 MALRD1Q5VYJ5 2156 aa9.9□□□□□ -0.82
HMGB1-206ENST00000405805 FAM90A26D6RGX4 464 aa9.9□□□□□ -0.82
HMGB1-206ENST00000405805 NUPR1O60356 82 aa9.9□□□□□ -0.82
HMGB1-206ENST00000405805 RPL8P62917 257 aaKnown RBP9.9□□□□□ -0.82
HMGB1-206ENST00000405805 ADAMTSL5Q6ZMM2 481 aa9.9□□□□□ -0.82
HMGB1-206ENST00000405805 OR1L4Q8NGR5 311 aa9.9□□□□□ -0.82
HMGB1-206ENST00000405805 TIMP3P35625 211 aa9.9□□□□□ -0.82
HMGB1-206ENST00000405805 Q6P435 159 aa9.9□□□□□ -0.82
HMGB1-206ENST00000405805 ZBTB34Q8NCN2 500 aa9.9□□□□□ -0.82
HMGB1-206ENST00000405805 TMEM242Q9NWH2 141 aa9.9□□□□□ -0.82
HMGB1-206ENST00000405805 OTOGLQ3ZCN5 2332 aa9.9□□□□□ -0.83
HMGB1-206ENST00000405805 FREM2Q5SZK8 3169 aa9.9□□□□□ -0.83
HMGB1-206ENST00000405805 TRAV1-1A0A0B4J248 108 aa9.89□□□□□ -0.83
HMGB1-206ENST00000405805 KIR2DL5BA0A0G2JN68 375 aa9.89□□□□□ -0.83
HMGB1-206ENST00000405805 KIR2DL5BA0A0G2JPC4 375 aa9.89□□□□□ -0.83
HMGB1-206ENST00000405805 CECR9P0C854 216 aa9.89□□□□□ -0.83
HMGB1-206ENST00000405805 HERV-K104P63124 156 aa9.89□□□□□ -0.83
HMGB1-206ENST00000405805 TNFAIP6P98066 277 aaPredicted RBP9.89□□□□□ -0.83
HMGB1-206ENST00000405805 SAMD5Q5TGI4 173 aa9.89□□□□□ -0.83
HMGB1-206ENST00000405805 KIR2DL5AQ8N109 375 aa9.89□□□□□ -0.83
HMGB1-206ENST00000405805 HARBI1Q96MB7 349 aa9.89□□□□□ -0.83
HMGB1-206ENST00000405805 CLEC7AQ9BXN2 247 aa9.89□□□□□ -0.83
HMGB1-206ENST00000405805 LINC00470Q9BZP3 86 aa9.89□□□□□ -0.83
HMGB1-206ENST00000405805 ZNF355PQ9NSJ1 428 aa9.89□□□□□ -0.83
HMGB1-206ENST00000405805 ZNRD1Q9P1U0 126 aa9.89□□□□□ -0.83
HMGB1-206ENST00000405805 TRAV8-6A0A0B4J262 113 aa9.89□□□□□ -0.83
HMGB1-206ENST00000405805 GPX1P07203 203 aa9.89□□□□□ -0.83
HMGB1-206ENST00000405805 MEF2CQ06413 473 aaPredicted RBP9.89□□□□□ -0.83
HMGB1-206ENST00000405805 TMEM14EPQ6UXP3 125 aa9.89□□□□□ -0.83
HMGB1-206ENST00000405805 ACP7Q6ZNF0 438 aa9.89□□□□□ -0.83
HMGB1-206ENST00000405805 WDR86Q86TI4 376 aa9.89□□□□□ -0.83
HMGB1-206ENST00000405805 MRPL52Q86TS9 123 aaKnown RBP9.89□□□□□ -0.83
HMGB1-206ENST00000405805 TMEM45BQ96B21 275 aa9.89□□□□□ -0.83
HMGB1-206ENST00000405805 FLYWCH2Q96CP2 140 aaKnown RBP9.89□□□□□ -0.83
HMGB1-206ENST00000405805 APOMO95445 188 aa9.89□□□□□ -0.83
HMGB1-206ENST00000405805 PSG3Q16557 428 aa9.89□□□□□ -0.83
HMGB1-206ENST00000405805 NABP2Q9BQ15 211 aa9.89□□□□□ -0.83
HMGB1-206ENST00000405805 CEP295Q9C0D2 2601 aa9.89□□□□□ -0.83
HMGB1-206ENST00000405805 SRSF6Q13247 344 aaKnown RBP9.89□□□□□ -0.83
HMGB1-206ENST00000405805 C1orf122Q6ZSJ8 110 aa9.89□□□□□ -0.83
HMGB1-206ENST00000405805 IL36BQ9NZH7 164 aa9.89□□□□□ -0.83
HMGB1-206ENST00000405805 AMY1AP04745 511 aa9.88□□□□□ -0.83
HMGB1-206ENST00000405805 ODF3L1Q8IXM7 274 aa9.88□□□□□ -0.83
HMGB1-206ENST00000405805 CALYQ9NYX4 217 aa9.88□□□□□ -0.83
HMGB1-206ENST00000405805 MUC6Q6W4X9 2439 aa9.88□□□□□ -0.83
HMGB1-206ENST00000405805 GAGE12HA6NDE8 117 aa9.88□□□□□ -0.83
HMGB1-206ENST00000405805 PEAR1Q5VY43 1037 aaPredicted RBP9.88□□□□□ -0.83
HMGB1-206ENST00000405805 C18orf15Q96N68 181 aa9.88□□□□□ -0.83
HMGB1-206ENST00000405805 CYSLTR1Q9Y271 337 aa9.88□□□□□ -0.83
HMGB1-206ENST00000405805 VENTXO95231 258 aa9.88□□□□□ -0.83
HMGB1-206ENST00000405805 CT45A10P0DMU9 189 aa9.88□□□□□ -0.83
HMGB1-206ENST00000405805 RND2P52198 227 aa9.88□□□□□ -0.83
HMGB1-206ENST00000405805 LRRC10Q5BKY1 277 aa9.88□□□□□ -0.83
HMGB1-206ENST00000405805 TREML4Q6UXN2 200 aa9.88□□□□□ -0.83
HMGB1-206ENST00000405805 COQ2Q96H96 371 aa9.88□□□□□ -0.83
HMGB1-206ENST00000405805 SPRR3Q9UBC9 169 aa9.88□□□□□ -0.83
HMGB1-206ENST00000405805 KRTCAP3Q53RY4 240 aa9.87□□□□□ -0.83
HMGB1-206ENST00000405805 RNFT1Q5M7Z0 435 aa9.87□□□□□ -0.83
HMGB1-206ENST00000405805 LYRM7Q5U5X0 104 aa9.87□□□□□ -0.83
HMGB1-206ENST00000405805 INO80CQ6PI98 192 aaPredicted RBP9.87□□□□□ -0.83
HMGB1-206ENST00000405805 WDR82Q6UXN9 313 aa9.87□□□□□ -0.83
HMGB1-206ENST00000405805 COLCA1Q6ZS62 124 aa9.87□□□□□ -0.83
HMGB1-206ENST00000405805 OR5A1Q8NGJ0 315 aa9.87□□□□□ -0.83
HMGB1-206ENST00000405805 PGLYRP4Q96LB8 373 aa9.87□□□□□ -0.83
HMGB1-206ENST00000405805 DKK1O94907 266 aa9.87□□□□□ -0.83
HMGB1-206ENST00000405805 HIST1H1AQ02539 215 aaPredicted RBP9.87□□□□□ -0.83
HMGB1-206ENST00000405805 VSTM2AQ8TAG5 236 aa9.87□□□□□ -0.83
HMGB1-206ENST00000405805 UFC1Q9Y3C8 167 aa9.87□□□□□ -0.83
HMGB1-206ENST00000405805 MRPS16Q9Y3D3 137 aaKnown RBP9.87□□□□□ -0.83
HMGB1-206ENST00000405805 CD59P13987 128 aa9.87□□□□□ -0.83
HMGB1-206ENST00000405805 HES1Q14469 280 aa9.87□□□□□ -0.83
HMGB1-206ENST00000405805 FAM216BQ8N7L0 139 aa9.87□□□□□ -0.83
HMGB1-206ENST00000405805 LINC00479Q96M42 142 aa9.87□□□□□ -0.83
HMGB1-206ENST00000405805 RAB9BQ9NP90 201 aa9.87□□□□□ -0.83
HMGB1-206ENST00000405805 TRAV5A0A0B4J249 113 aa9.86□□□□□ -0.83
HMGB1-206ENST00000405805 MGST3O14880 152 aa9.86□□□□□ -0.83
HMGB1-206ENST00000405805 HSPE1P61604 102 aaKnown RBP9.86□□□□□ -0.83
HMGB1-206ENST00000405805 FDCSPQ8NFU4 85 aa9.86□□□□□ -0.83
HMGB1-206ENST00000405805 OR9G1Q8NH87 305 aa9.86□□□□□ -0.83
HMGB1-206ENST00000405805 LRP4O75096 1905 aa9.86□□□□□ -0.83
HMGB1-206ENST00000405805 TRAV8-2A0A0B4J237 113 aa9.86□□□□□ -0.83
HMGB1-206ENST00000405805 F2Z2F3 143 aa9.86□□□□□ -0.83
HMGB1-206ENST00000405805 IGLL1P15814 213 aa9.86□□□□□ -0.83
HMGB1-206ENST00000405805 COL8A1P27658 744 aa9.86□□□□□ -0.83
HMGB1-206ENST00000405805 KIR3DS1Q14943 382 aa9.86□□□□□ -0.83
HMGB1-206ENST00000405805 ZFAND6Q6FIF0 208 aa9.86□□□□□ -0.83
HMGB1-206ENST00000405805 WDR83OSQ9Y284 106 aa9.86□□□□□ -0.83
HMGB1-206ENST00000405805 C15orf62A8K5M9 175 aa9.86□□□□□ -0.83
HMGB1-206ENST00000405805 RBP4P02753 201 aa9.86□□□□□ -0.83
HMGB1-206ENST00000405805 COX7A1P24310 79 aa9.86□□□□□ -0.83
HMGB1-206ENST00000405805 GAGE2BQ13066 116 aa9.86□□□□□ -0.83
HMGB1-206ENST00000405805 TMEM249Q2WGJ8 235 aa9.86□□□□□ -0.83
HMGB1-206ENST00000405805 GAGE2EQ4V326 116 aa9.86□□□□□ -0.83
HMGB1-206ENST00000405805 OR4A5Q8NH83 315 aa9.86□□□□□ -0.83
HMGB1-206ENST00000405805 SVIPQ8NHG7 77 aa9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 79.1 ms