RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 ZNF207O43670 478 aaKnown RBP16.36■□□□□ 0.21
CLN3-207ENST00000395653 PRAF2O60831 178 aa16.36■□□□□ 0.21
CLN3-207ENST00000395653 GTSCR1Q86UQ5 136 aa16.36■□□□□ 0.21
CLN3-207ENST00000395653 ACY3Q96HD9 319 aa16.36■□□□□ 0.21
CLN3-207ENST00000395653 GSKIPQ9P0R6 139 aa16.36■□□□□ 0.21
CLN3-207ENST00000395653 TRAV14DV4A0A0A6YYC5 116 aa16.36■□□□□ 0.21
CLN3-207ENST00000395653 IGHV7-4-1A0A0J9YVY3 117 aa16.36■□□□□ 0.21
CLN3-207ENST00000395653 INMT-MINDY4F8WBC2 141 aa16.36■□□□□ 0.21
CLN3-207ENST00000395653 SCGB1D2O95969 90 aa16.36■□□□□ 0.21
CLN3-207ENST00000395653 OR10J1P30954 320 aa16.36■□□□□ 0.21
CLN3-207ENST00000395653 TIGITQ495A1 244 aa16.36■□□□□ 0.21
CLN3-207ENST00000395653 NPIPB3Q92617 1050 aa16.36■□□□□ 0.21
CLN3-207ENST00000395653 WDR89Q96FK6 387 aaPredicted RBP16.36■□□□□ 0.21
CLN3-207ENST00000395653 B9D2Q9BPU9 175 aa16.36■□□□□ 0.21
CLN3-207ENST00000395653 MARVELD1Q9BSK0 173 aa16.36■□□□□ 0.21
CLN3-207ENST00000395653 SMPXQ9UHP9 88 aa16.36■□□□□ 0.21
CLN3-207ENST00000395653 PAIP2BQ9ULR5 123 aaKnown RBP16.36■□□□□ 0.21
CLN3-207ENST00000395653 STRAPQ9Y3F4 350 aaKnown RBP16.36■□□□□ 0.21
CLN3-207ENST00000395653 SNRPGP15A8MWD9 76 aa16.35■□□□□ 0.21
CLN3-207ENST00000395653 SSSCA1O60232 199 aa16.35■□□□□ 0.21
CLN3-207ENST00000395653 YPEL3P61236 119 aaPredicted RBP16.35■□□□□ 0.21
CLN3-207ENST00000395653 GUCA2BQ16661 112 aa16.35■□□□□ 0.21
CLN3-207ENST00000395653 SPANXN5Q5MJ07 72 aa16.35■□□□□ 0.21
CLN3-207ENST00000395653 SLC35E1Q96K37 410 aa16.35■□□□□ 0.21
CLN3-207ENST00000395653 SMIM8Q96KF7 97 aa16.35■□□□□ 0.21
CLN3-207ENST00000395653 C5orf51A6NDU8 294 aa16.34■□□□□ 0.21
CLN3-207ENST00000395653 FAM25EA8MYX2 175 aa16.34■□□□□ 0.21
CLN3-207ENST00000395653 H3BP45 60 aa16.34■□□□□ 0.21
CLN3-207ENST00000395653 GAMTQ14353 236 aa16.34■□□□□ 0.21
CLN3-207ENST00000395653 RBPMS2Q6ZRY4 209 aaKnown RBP16.34■□□□□ 0.21
CLN3-207ENST00000395653 RAB40CQ96S21 281 aa16.34■□□□□ 0.21
CLN3-207ENST00000395653 PSENENQ9NZ42 101 aa16.34■□□□□ 0.21
CLN3-207ENST00000395653 RCL1Q9Y2P8 373 aaKnown RBP16.34■□□□□ 0.21
CLN3-207ENST00000395653 SELENOKQ9Y6D0 94 aa16.34■□□□□ 0.21
CLN3-207ENST00000395653 PRSS46E5RG02 174 aa16.33■□□□□ 0.2
CLN3-207ENST00000395653 MBPP02686 304 aaPredicted RBP16.33■□□□□ 0.2
CLN3-207ENST00000395653 LAMTOR1Q6IAA8 161 aa16.33■□□□□ 0.2
CLN3-207ENST00000395653 C2orf50Q96LR7 162 aa16.33■□□□□ 0.2
CLN3-207ENST00000395653 RHPN1-AS1Q9BWJ2 59 aa16.33■□□□□ 0.2
CLN3-207ENST00000395653 CHEK1O14757 476 aa16.32■□□□□ 0.2
CLN3-207ENST00000395653 SCAF4O95104 1147 aaKnown RBP16.32■□□□□ 0.2
CLN3-207ENST00000395653 BMI1P35226 326 aa16.32■□□□□ 0.2
CLN3-207ENST00000395653 PAX9P55771 341 aa16.32■□□□□ 0.2
CLN3-207ENST00000395653 TAS2R30P59541 319 aa16.32■□□□□ 0.2
CLN3-207ENST00000395653 GSG1LQ6UXU4 331 aa16.32■□□□□ 0.2
CLN3-207ENST00000395653 Q8WTZ3 238 aa16.32■□□□□ 0.2
CLN3-207ENST00000395653 A8MZ25 164 aa16.31■□□□□ 0.2
CLN3-207ENST00000395653 TSPAN4O14817 238 aa16.31■□□□□ 0.2
CLN3-207ENST00000395653 TSC22D2O75157 780 aa16.31■□□□□ 0.2
CLN3-207ENST00000395653 CD81P60033 236 aa16.31■□□□□ 0.2
CLN3-207ENST00000395653 TOMM40O96008 361 aa16.3■□□□□ 0.2
CLN3-207ENST00000395653 SPAG8Q99932 426 aaPredicted RBP16.3■□□□□ 0.2
CLN3-207ENST00000395653 NEURL2Q9BR09 285 aa16.3■□□□□ 0.2
CLN3-207ENST00000395653 VSIRQ9H7M9 311 aa16.3■□□□□ 0.2
CLN3-207ENST00000395653 DNAH9Q9NYC9 4486 aa16.3■□□□□ 0.2
CLN3-207ENST00000395653 IGHV3-49A0A0A0MS15 119 aa16.29■□□□□ 0.2
CLN3-207ENST00000395653 ZFP92A6NM28 416 aa16.29■□□□□ 0.2
CLN3-207ENST00000395653 IGHV4-30-4P0DP06 118 aa16.29■□□□□ 0.2
CLN3-207ENST00000395653 NPPCP23582 126 aa16.29■□□□□ 0.2
CLN3-207ENST00000395653 TMEM14EPQ6UXP3 125 aa16.29■□□□□ 0.2
CLN3-207ENST00000395653 METTL26Q96S19 204 aa16.29■□□□□ 0.2
CLN3-207ENST00000395653 RNF2Q99496 336 aa16.29■□□□□ 0.2
CLN3-207ENST00000395653 C7orf66A4D0T2 115 aa16.28■□□□□ 0.2
CLN3-207ENST00000395653 PMS2P5A8MQ11 134 aa16.28■□□□□ 0.2
CLN3-207ENST00000395653 K7EPK0 472 aa16.28■□□□□ 0.2
CLN3-207ENST00000395653 PTTG1O95997 202 aa16.28■□□□□ 0.2
CLN3-207ENST00000395653 CD5P06127 495 aa16.28■□□□□ 0.2
CLN3-207ENST00000395653 CD7P09564 240 aa16.28■□□□□ 0.2
CLN3-207ENST00000395653 RD3LP0DJH9 198 aa16.28■□□□□ 0.2
CLN3-207ENST00000395653 CRYBB3P26998 211 aa16.28■□□□□ 0.2
CLN3-207ENST00000395653 IL15RAQ13261 267 aa16.28■□□□□ 0.2
CLN3-207ENST00000395653 TMEM231Q9H6L2 316 aa16.28■□□□□ 0.2
CLN3-207ENST00000395653 IGKV1D-37A0A075B6S9 117 aa16.28■□□□□ 0.2
CLN3-207ENST00000395653 IGHV3OR16-13A0A075B7E8 117 aa16.28■□□□□ 0.2
CLN3-207ENST00000395653 IGHV3-74A0A0B4J1X5 117 aa16.28■□□□□ 0.2
CLN3-207ENST00000395653 A0A1W2PS18 150 aa16.28■□□□□ 0.2
CLN3-207ENST00000395653 APOHP02749 345 aaPredicted RBP16.28■□□□□ 0.2
CLN3-207ENST00000395653 FABP1P07148 127 aa16.28■□□□□ 0.2
CLN3-207ENST00000395653 FRMD6-AS1P0C7T7 363 aa16.28■□□□□ 0.2
CLN3-207ENST00000395653 PSG1P11464 419 aa16.28■□□□□ 0.2
CLN3-207ENST00000395653 ACOT7LQ6ZUV0 252 aa16.28■□□□□ 0.2
CLN3-207ENST00000395653 THAP8Q8NA92 274 aa16.28■□□□□ 0.2
CLN3-207ENST00000395653 ST8SIA2Q92186 375 aa16.28■□□□□ 0.2
CLN3-207ENST00000395653 C19orf73Q9NVV2 129 aa16.28■□□□□ 0.2
CLN3-207ENST00000395653 LSM5Q9Y4Y9 91 aaKnown RBP16.28■□□□□ 0.2
CLN3-207ENST00000395653 L7N2F9 121 aa16.27■□□□□ 0.19
CLN3-207ENST00000395653 IL4P05112 153 aa16.27■□□□□ 0.19
CLN3-207ENST00000395653 VAMP2P63027 116 aa16.27■□□□□ 0.19
CLN3-207ENST00000395653 FAM90A2PQ658T7 463 aa16.27■□□□□ 0.19
CLN3-207ENST00000395653 OR8G2PQ6IF36 304 aa16.27■□□□□ 0.19
CLN3-207ENST00000395653 OR51G1Q8NGK1 321 aa16.27■□□□□ 0.19
CLN3-207ENST00000395653 NARS2Q96I59 477 aaKnown RBP16.27■□□□□ 0.19
CLN3-207ENST00000395653 TRGV9Q99603 122 aa16.27■□□□□ 0.19
CLN3-207ENST00000395653 IGKV1OR2-108A0A075B7D4 117 aa16.26■□□□□ 0.19
CLN3-207ENST00000395653 GOSR2O14653 212 aa16.26■□□□□ 0.19
CLN3-207ENST00000395653 METTL15P1P0C7V9 234 aa16.26■□□□□ 0.19
CLN3-207ENST00000395653 ZNF90Q03938 601 aa16.26■□□□□ 0.19
CLN3-207ENST00000395653 USF2Q15853 346 aaPredicted RBP16.26■□□□□ 0.19
CLN3-207ENST00000395653 C11orf1Q9H5F2 150 aa16.26■□□□□ 0.19
CLN3-207ENST00000395653 OR4C46A6NHA9 309 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms