RNA–Protein interactions for RNA: ENST00000394253.7

USP49-203, Transcript of ubiquitin specific peptidase 49, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP49, Length 9,034 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-203ENST00000394253 Q6ZNB5 142 aa11.34□□□□□ -0.59
USP49-203ENST00000394253 VEGFBP49765 207 aa11.34□□□□□ -0.59
USP49-203ENST00000394253 OR5P3Q8WZ94 311 aa11.34□□□□□ -0.59
USP49-203ENST00000394253 Q96M66 194 aa11.34□□□□□ -0.59
USP49-203ENST00000394253 PILRBQ9UKJ0 227 aa11.34□□□□□ -0.59
USP49-203ENST00000394253 CCL21O00585 134 aa11.34□□□□□ -0.59
USP49-203ENST00000394253 ZNF708P17019 499 aa11.34□□□□□ -0.59
USP49-203ENST00000394253 RPL23P62829 140 aaKnown RBP11.34□□□□□ -0.59
USP49-203ENST00000394253 FOXC1Q12948 553 aa11.34□□□□□ -0.59
USP49-203ENST00000394253 ZNF625Q96I27 306 aaPredicted RBP11.34□□□□□ -0.59
USP49-203ENST00000394253 ZNF703Q9H7S9 590 aaPredicted RBP11.34□□□□□ -0.59
USP49-203ENST00000394253 TCF20Q9UGU0 1960 aaKnown RBP11.34□□□□□ -0.59
USP49-203ENST00000394253 A0A087X0K7 114 aa11.34□□□□□ -0.59
USP49-203ENST00000394253 DUSP14O95147 198 aaKnown RBP11.34□□□□□ -0.59
USP49-203ENST00000394253 ZP4Q12836 540 aa11.34□□□□□ -0.59
USP49-203ENST00000394253 TRBV5-5A0A0J9YX44 114 aa11.34□□□□□ -0.59
USP49-203ENST00000394253 GPR179Q6PRD1 2367 aa11.34□□□□□ -0.59
USP49-203ENST00000394253 IGHG4P01861 327 aa11.33□□□□□ -0.59
USP49-203ENST00000394253 CD33P20138 364 aa11.33□□□□□ -0.59
USP49-203ENST00000394253 KIAA0040Q15053 153 aa11.33□□□□□ -0.6
USP49-203ENST00000394253 IFI27L2Q9H2X8 130 aa11.33□□□□□ -0.6
USP49-203ENST00000394253 CHKB-CPT1BH3BT56 60 aa11.33□□□□□ -0.6
USP49-203ENST00000394253 C1QAP02745 245 aa11.33□□□□□ -0.6
USP49-203ENST00000394253 TMEM144Q7Z5S9 345 aa11.33□□□□□ -0.6
USP49-203ENST00000394253 TIMM21Q9BVV7 248 aa11.33□□□□□ -0.6
USP49-203ENST00000394253 PCNX3Q9H6A9 2034 aa11.33□□□□□ -0.6
USP49-203ENST00000394253 FOXL1Q12952 345 aa11.33□□□□□ -0.6
USP49-203ENST00000394253 LRP10Q7Z4F1 713 aa11.33□□□□□ -0.6
USP49-203ENST00000394253 ZNF71Q9NQZ8 489 aaPredicted RBP11.33□□□□□ -0.6
USP49-203ENST00000394253 ACTL10Q5JWF8 245 aa11.33□□□□□ -0.6
USP49-203ENST00000394253 NABP1Q96AH0 204 aa11.33□□□□□ -0.6
USP49-203ENST00000394253 CCL19Q99731 98 aa11.33□□□□□ -0.6
USP49-203ENST00000394253 DLL3Q9NYJ7 618 aa11.33□□□□□ -0.6
USP49-203ENST00000394253 LILRA1O75019 489 aa11.33□□□□□ -0.6
USP49-203ENST00000394253 MARF1Q9Y4F3 1742 aaKnown RBP11.33□□□□□ -0.6
USP49-203ENST00000394253 CCDC168Q8NDH2 2452 aa11.33□□□□□ -0.6
USP49-203ENST00000394253 MUC21A0A0G2JKD1 596 aa11.33□□□□□ -0.6
USP49-203ENST00000394253 MUC21A0A140T8X8 626 aa11.33□□□□□ -0.6
USP49-203ENST00000394253 DRD3P35462 400 aa11.33□□□□□ -0.6
USP49-203ENST00000394253 MUC21Q5SSG8 566 aa11.33□□□□□ -0.6
USP49-203ENST00000394253 CLPSL1A2RUU4 121 aa11.32□□□□□ -0.6
USP49-203ENST00000394253 C1orf100Q5SVJ3 147 aa11.32□□□□□ -0.6
USP49-203ENST00000394253 BHLHA9Q7RTU4 235 aa11.32□□□□□ -0.6
USP49-203ENST00000394253 CFHR5Q9BXR6 569 aa11.32□□□□□ -0.6
USP49-203ENST00000394253 KLHDC2Q9Y2U9 406 aa11.32□□□□□ -0.6
USP49-203ENST00000394253 A0A0U1RRA0 63 aa11.32□□□□□ -0.6
USP49-203ENST00000394253 C6orf226Q5I0X4 101 aa11.32□□□□□ -0.6
USP49-203ENST00000394253 GFI1BQ5VTD9 330 aa11.32□□□□□ -0.6
USP49-203ENST00000394253 TPRX1Q8N7U7 411 aa11.32□□□□□ -0.6
USP49-203ENST00000394253 UCN2Q96RP3 112 aa11.32□□□□□ -0.6
USP49-203ENST00000394253 WFDC6Q9BQY6 131 aa11.32□□□□□ -0.6
USP49-203ENST00000394253 HTN3P15516 51 aa11.32□□□□□ -0.6
USP49-203ENST00000394253 C3AR1Q16581 482 aa11.32□□□□□ -0.6
USP49-203ENST00000394253 CT55Q8WUE5 264 aa11.32□□□□□ -0.6
USP49-203ENST00000394253 TNRC6BQ9UPQ9 1833 aaKnown RBP11.32□□□□□ -0.6
USP49-203ENST00000394253 HIST3H2BBQ8N257 126 aa11.32□□□□□ -0.6
USP49-203ENST00000394253 MMP23AO75900 390 aa11.32□□□□□ -0.6
USP49-203ENST00000394253 GAGE7O76087 117 aa11.32□□□□□ -0.6
USP49-203ENST00000394253 IGHV3-48P01763 117 aa11.32□□□□□ -0.6
USP49-203ENST00000394253 GAGE12FP0CL80 117 aa11.32□□□□□ -0.6
USP49-203ENST00000394253 GAGE12GP0CL81 117 aa11.32□□□□□ -0.6
USP49-203ENST00000394253 GAGE12IP0CL82 117 aa11.32□□□□□ -0.6
USP49-203ENST00000394253 COX6B1P14854 86 aa11.32□□□□□ -0.6
USP49-203ENST00000394253 MYF5P13349 255 aa11.32□□□□□ -0.6
USP49-203ENST00000394253 ZXDCQ2QGD7 858 aaPredicted RBP11.32□□□□□ -0.6
USP49-203ENST00000394253 IGHV1OR21-1A0A087WYE8 117 aa11.31□□□□□ -0.6
USP49-203ENST00000394253 PRSS41Q7RTY9 318 aa11.31□□□□□ -0.6
USP49-203ENST00000394253 DSCAMO60469 2012 aa11.31□□□□□ -0.6
USP49-203ENST00000394253 COX5BP10606 129 aa11.31□□□□□ -0.6
USP49-203ENST00000394253 IGFBP2P18065 325 aa11.31□□□□□ -0.6
USP49-203ENST00000394253 CTGFP29279 349 aa11.31□□□□□ -0.6
USP49-203ENST00000394253 A0A1W2PPI3 338 aa11.31□□□□□ -0.6
USP49-203ENST00000394253 FAM90A9PA6NNJ1 464 aa11.31□□□□□ -0.6
USP49-203ENST00000394253 J3KT08 172 aa11.31□□□□□ -0.6
USP49-203ENST00000394253 PSCAO43653 123 aa11.31□□□□□ -0.6
USP49-203ENST00000394253 PVRIGQ6DKI7 326 aa11.31□□□□□ -0.6
USP49-203ENST00000394253 ZFP36L2P47974 494 aaKnown RBP11.31□□□□□ -0.6
USP49-203ENST00000394253 OR13A1Q8NGR1 328 aa11.31□□□□□ -0.6
USP49-203ENST00000394253 PRR33A8MZF0 331 aa11.31□□□□□ -0.6
USP49-203ENST00000394253 CT62P0C5K7 136 aa11.31□□□□□ -0.6
USP49-203ENST00000394253 CD5P06127 495 aa11.3□□□□□ -0.6
USP49-203ENST00000394253 LINC01555Q8NAE3 123 aa11.3□□□□□ -0.6
USP49-203ENST00000394253 C1orf162Q8NEQ5 155 aaPredicted RBP11.3□□□□□ -0.6
USP49-203ENST00000394253 AHRRA9YTQ3 701 aa11.3□□□□□ -0.6
USP49-203ENST00000394253 TIMP3P35625 211 aa11.3□□□□□ -0.6
USP49-203ENST00000394253 FBXL7Q9UJT9 491 aa11.3□□□□□ -0.6
USP49-203ENST00000394253 LY75O60449 1722 aa11.3□□□□□ -0.6
USP49-203ENST00000394253 TFF3Q07654 80 aa11.3□□□□□ -0.6
USP49-203ENST00000394253 VCYO14598 125 aa11.3□□□□□ -0.6
USP49-203ENST00000394253 WBP1LQ9NX94 342 aa11.3□□□□□ -0.6
USP49-203ENST00000394253 ZIC3O60481 467 aa11.29□□□□□ -0.6
USP49-203ENST00000394253 PSG4Q00888 419 aa11.29□□□□□ -0.6
USP49-203ENST00000394253 TRIP6Q15654 476 aaKnown RBP11.29□□□□□ -0.6
USP49-203ENST00000394253 RSPO2Q6UXX9 243 aaPredicted RBP11.29□□□□□ -0.6
USP49-203ENST00000394253 CEACAM8P31997 349 aaPredicted RBP11.29□□□□□ -0.6
USP49-203ENST00000394253 AMBPP02760 352 aa11.29□□□□□ -0.6
USP49-203ENST00000394253 FAM214BQ7L5A3 538 aa11.29□□□□□ -0.6
USP49-203ENST00000394253 RNF115Q9Y4L5 304 aa11.29□□□□□ -0.6
USP49-203ENST00000394253 SYS1-DBNDD2H3BUS1 97 aa11.29□□□□□ -0.6
USP49-203ENST00000394253 NGFRP08138 427 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms