RNA–Protein interactions for RNA: ENST00000389629.8

RTF1-201, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTF1, Length 5,021 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-201ENST00000389629 CHODLQ9H9P2 273 aa11.78□□□□□ -0.52
RTF1-201ENST00000389629 NBASA2RRP1 2371 aa11.78□□□□□ -0.52
RTF1-201ENST00000389629 FCGR2BP31994 310 aaPredicted RBP11.78□□□□□ -0.52
RTF1-201ENST00000389629 RPL15P61313 204 aaKnown RBP11.78□□□□□ -0.52
RTF1-201ENST00000389629 ZNF714Q96N38 554 aa11.78□□□□□ -0.52
RTF1-201ENST00000389629 IGLL1P15814 213 aa11.78□□□□□ -0.52
RTF1-201ENST00000389629 C2orf83Q53S99 150 aa11.78□□□□□ -0.52
RTF1-201ENST00000389629 TMEM108Q6UXF1 575 aa11.78□□□□□ -0.52
RTF1-201ENST00000389629 OR10W1Q8NGF6 305 aa11.78□□□□□ -0.52
RTF1-201ENST00000389629 SCRT1Q9BWW7 348 aa11.78□□□□□ -0.52
RTF1-201ENST00000389629 LSM4Q9Y4Z0 139 aaKnown RBP11.78□□□□□ -0.52
RTF1-201ENST00000389629 A0A1B0GWB2 263 aa11.77□□□□□ -0.52
RTF1-201ENST00000389629 AREGP15514 252 aa11.77□□□□□ -0.52
RTF1-201ENST00000389629 CACNG7P62955 275 aa11.77□□□□□ -0.52
RTF1-201ENST00000389629 SFTA2Q6UW10 78 aa11.77□□□□□ -0.52
RTF1-201ENST00000389629 C18orf32Q8TCD1 76 aa11.77□□□□□ -0.52
RTF1-201ENST00000389629 C5orf30Q96GV9 206 aa11.77□□□□□ -0.52
RTF1-201ENST00000389629 NHP2Q9NX24 153 aaKnown RBP11.77□□□□□ -0.52
RTF1-201ENST00000389629 SAA2-SAA4A0A096LPE2 208 aa11.77□□□□□ -0.53
RTF1-201ENST00000389629 NPIPB11E5RHQ5 1161 aa11.77□□□□□ -0.53
RTF1-201ENST00000389629 SAA2P0DJI9 122 aaPredicted RBP11.77□□□□□ -0.53
RTF1-201ENST00000389629 FXYD7P58549 80 aa11.77□□□□□ -0.53
RTF1-201ENST00000389629 ZNF257Q9Y2Q1 563 aa11.77□□□□□ -0.53
RTF1-201ENST00000389629 F5H697 171 aa11.77□□□□□ -0.53
RTF1-201ENST00000389629 SYS1-DBNDD2H3BUS1 97 aa11.77□□□□□ -0.53
RTF1-201ENST00000389629 CD24P25063 80 aa11.77□□□□□ -0.53
RTF1-201ENST00000389629 TMUB1Q9BVT8 246 aa11.77□□□□□ -0.53
RTF1-201ENST00000389629 GTSF1LQ9H1H1 148 aa11.77□□□□□ -0.53
RTF1-201ENST00000389629 H7C2G1 150 aa11.77□□□□□ -0.53
RTF1-201ENST00000389629 IL18BPO95998 194 aa11.77□□□□□ -0.53
RTF1-201ENST00000389629 MLANAQ16655 118 aa11.77□□□□□ -0.53
RTF1-201ENST00000389629 LYRM7Q5U5X0 104 aa11.77□□□□□ -0.53
RTF1-201ENST00000389629 MAP1LC3AQ9H492 121 aa11.76□□□□□ -0.53
RTF1-201ENST00000389629 EPDR1Q9UM22 224 aa11.76□□□□□ -0.53
RTF1-201ENST00000389629 GFRA3O60609 400 aa11.76□□□□□ -0.53
RTF1-201ENST00000389629 CGB1A6NKQ9 187 aa11.76□□□□□ -0.53
RTF1-201ENST00000389629 SMIM17P0DL12 118 aa11.76□□□□□ -0.53
RTF1-201ENST00000389629 COQ2Q96H96 371 aa11.76□□□□□ -0.53
RTF1-201ENST00000389629 Q9H3A6 140 aa11.75□□□□□ -0.53
RTF1-201ENST00000389629 ZNF503-AS2A6NEH8 195 aa11.75□□□□□ -0.53
RTF1-201ENST00000389629 NKX2-8O15522 239 aa11.75□□□□□ -0.53
RTF1-201ENST00000389629 ZFP36L1Q07352 338 aaKnown RBP11.75□□□□□ -0.53
RTF1-201ENST00000389629 SLAQ13239 276 aa11.75□□□□□ -0.53
RTF1-201ENST00000389629 GUSBP1Q15486 140 aa11.75□□□□□ -0.53
RTF1-201ENST00000389629 SPANXN1Q5VSR9 72 aa11.75□□□□□ -0.53
RTF1-201ENST00000389629 A0A0G2JLM5 398 aa11.75□□□□□ -0.53
RTF1-201ENST00000389629 PRR33A8MZF0 331 aa11.75□□□□□ -0.53
RTF1-201ENST00000389629 YPEL1O60688 119 aa11.75□□□□□ -0.53
RTF1-201ENST00000389629 SAA1P0DJI8 122 aaPredicted RBP11.75□□□□□ -0.53
RTF1-201ENST00000389629 LMO1P25800 156 aa11.75□□□□□ -0.53
RTF1-201ENST00000389629 PDLIM4P50479 330 aa11.75□□□□□ -0.53
RTF1-201ENST00000389629 OR4C13Q8NGP0 309 aa11.75□□□□□ -0.53
RTF1-201ENST00000389629 YPEL2Q96QA6 119 aa11.75□□□□□ -0.53
RTF1-201ENST00000389629 MRPL27Q9P0M9 148 aaKnown RBP11.75□□□□□ -0.53
RTF1-201ENST00000389629 FAM216BQ8N7L0 139 aa11.75□□□□□ -0.53
RTF1-201ENST00000389629 S4R3C0 116 aa11.75□□□□□ -0.53
RTF1-201ENST00000389629 PCDH15Q96QU1 1955 aa11.74□□□□□ -0.53
RTF1-201ENST00000389629 NPPCP23582 126 aa11.74□□□□□ -0.53
RTF1-201ENST00000389629 SEC11AP67812 179 aa11.74□□□□□ -0.53
RTF1-201ENST00000389629 PSG9Q00887 426 aa11.74□□□□□ -0.53
RTF1-201ENST00000389629 IGHV3-35A0A0C4DH35 117 aa11.74□□□□□ -0.53
RTF1-201ENST00000389629 SIGMAR1Q99720 223 aa11.74□□□□□ -0.53
RTF1-201ENST00000389629 IGHV2OR16-5A0A0B4J2B6 119 aa11.74□□□□□ -0.53
RTF1-201ENST00000389629 KBTBD11-OT1A0A1B0GTJ5 212 aa11.74□□□□□ -0.53
RTF1-201ENST00000389629 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.74□□□□□ -0.53
RTF1-201ENST00000389629 ZNF418Q8TF45 676 aaPredicted RBP11.74□□□□□ -0.53
RTF1-201ENST00000389629 MBNL3Q9NUK0 354 aaKnown RBP11.74□□□□□ -0.53
RTF1-201ENST00000389629 V9GYV3 84 aa11.74□□□□□ -0.53
RTF1-201ENST00000389629 MGPP08493 103 aa11.73□□□□□ -0.53
RTF1-201ENST00000389629 CD69Q07108 199 aa11.73□□□□□ -0.53
RTF1-201ENST00000389629 CHCHD1Q96BP2 118 aaKnown RBP11.73□□□□□ -0.53
RTF1-201ENST00000389629 LY96Q9Y6Y9 160 aa11.73□□□□□ -0.53
RTF1-201ENST00000389629 UPK2O00526 184 aa11.73□□□□□ -0.53
RTF1-201ENST00000389629 FOXC2Q99958 501 aa11.73□□□□□ -0.53
RTF1-201ENST00000389629 MRPL20Q9BYC9 149 aaKnown RBP11.73□□□□□ -0.53
RTF1-201ENST00000389629 SOX21Q9Y651 276 aaPredicted RBP11.73□□□□□ -0.53
RTF1-201ENST00000389629 MLNRO43193 412 aa11.72□□□□□ -0.53
RTF1-201ENST00000389629 C10orf55Q5SWW7 151 aa11.72□□□□□ -0.53
RTF1-201ENST00000389629 IGKV3-7A0A075B6H7 116 aa11.72□□□□□ -0.53
RTF1-201ENST00000389629 PPIAL4EA0A075B759 164 aa11.72□□□□□ -0.53
RTF1-201ENST00000389629 PPIAL4FP0DN26 164 aa11.72□□□□□ -0.53
RTF1-201ENST00000389629 C1orf185Q5T7R7 199 aa11.72□□□□□ -0.53
RTF1-201ENST00000389629 CACNG8Q8WXS5 425 aa11.72□□□□□ -0.53
RTF1-201ENST00000389629 FGF23Q9GZV9 251 aaPredicted RBP11.72□□□□□ -0.53
RTF1-201ENST00000389629 GP6Q9HCN6 339 aa11.72□□□□□ -0.53
RTF1-201ENST00000389629 C19orf67A6NJJ6 358 aa11.72□□□□□ -0.53
RTF1-201ENST00000389629 FAM231BA6NCW3 169 aa11.72□□□□□ -0.53
RTF1-201ENST00000389629 CD5LO43866 347 aa11.72□□□□□ -0.53
RTF1-201ENST00000389629 TRIP6Q15654 476 aaKnown RBP11.72□□□□□ -0.53
RTF1-201ENST00000389629 SAMD5Q5TGI4 173 aa11.72□□□□□ -0.53
RTF1-201ENST00000389629 CRIP3Q6Q6R5 217 aa11.72□□□□□ -0.53
RTF1-201ENST00000389629 FMC1Q96HJ9 113 aa11.72□□□□□ -0.53
RTF1-201ENST00000389629 NTN3O00634 580 aaPredicted RBP11.71□□□□□ -0.53
RTF1-201ENST00000389629 RPL13AP40429 203 aaKnown RBP11.71□□□□□ -0.53
RTF1-201ENST00000389629 MS4A6AQ9H2W1 248 aa11.71□□□□□ -0.53
RTF1-201ENST00000389629 K7EN84 100 aa11.71□□□□□ -0.53
RTF1-201ENST00000389629 TGFAP01135 160 aa11.71□□□□□ -0.53
RTF1-201ENST00000389629 ORMDL3Q8N138 153 aa11.71□□□□□ -0.53
RTF1-201ENST00000389629 TTC9CQ8N5M4 171 aa11.71□□□□□ -0.53
RTF1-201ENST00000389629 CD177Q8N6Q3 437 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms