RNA–Protein interactions for RNA: ENST00000375340.10

SMC1A-202, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 1 (best) BASIC

Gene SMC1A, Length 9,930 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-202ENST00000375340 NDUFA3O95167 84 aa5.39□□□□□ -1.55
SMC1A-202ENST00000375340 LOXL3P58215 753 aa5.39□□□□□ -1.55
SMC1A-202ENST00000375340 IGKV1D-17A0A075B6S4 117 aa5.39□□□□□ -1.55
SMC1A-202ENST00000375340 TMPRSS3P57727 454 aa5.39□□□□□ -1.55
SMC1A-202ENST00000375340 MLANAQ16655 118 aa5.39□□□□□ -1.55
SMC1A-202ENST00000375340 SEMA5BQ9P283 1151 aa5.39□□□□□ -1.55
SMC1A-202ENST00000375340 TCRBV4S1A1TA0A5B7 111 aa5.39□□□□□ -1.55
SMC1A-202ENST00000375340 TM4SF5O14894 197 aa5.39□□□□□ -1.55
SMC1A-202ENST00000375340 IGHV1-46P01743 117 aa5.39□□□□□ -1.55
SMC1A-202ENST00000375340 MFAP4P55083 255 aa5.39□□□□□ -1.55
SMC1A-202ENST00000375340 PRCDQ00LT1 54 aa5.39□□□□□ -1.55
SMC1A-202ENST00000375340 ZNF414Q96IQ9 312 aa5.39□□□□□ -1.55
SMC1A-202ENST00000375340 LOC105371242A0A075B767 164 aa5.39□□□□□ -1.55
SMC1A-202ENST00000375340 RNFT1Q5M7Z0 435 aa5.39□□□□□ -1.55
SMC1A-202ENST00000375340 TIMM23BQ5SRD1 257 aa5.39□□□□□ -1.55
SMC1A-202ENST00000375340 TMEM78Q5T7P6 136 aa5.39□□□□□ -1.55
SMC1A-202ENST00000375340 FAM90A1Q86YD7 464 aa5.39□□□□□ -1.55
SMC1A-202ENST00000375340 EXOC3-AS1Q8N2X6 119 aa5.39□□□□□ -1.55
SMC1A-202ENST00000375340 ZNF114Q8NC26 417 aa5.39□□□□□ -1.55
SMC1A-202ENST00000375340 EPDR1Q9UM22 224 aa5.39□□□□□ -1.55
SMC1A-202ENST00000375340 PKDREJQ9NTG1 2253 aa5.39□□□□□ -1.55
SMC1A-202ENST00000375340 PLA2G5P39877 138 aa5.39□□□□□ -1.55
SMC1A-202ENST00000375340 ZNF329Q86UD4 541 aa5.39□□□□□ -1.55
SMC1A-202ENST00000375340 WDR83OSQ9Y284 106 aa5.39□□□□□ -1.55
SMC1A-202ENST00000375340 LINC00312Q9Y6C7 94 aa5.39□□□□□ -1.55
SMC1A-202ENST00000375340 NPIPB11E5RHQ5 1161 aa5.38□□□□□ -1.55
SMC1A-202ENST00000375340 DLX6P56179 175 aa5.38□□□□□ -1.55
SMC1A-202ENST00000375340 C1orf162Q8NEQ5 155 aaPredicted RBP5.38□□□□□ -1.55
SMC1A-202ENST00000375340 POLEQ07864 2286 aa5.38□□□□□ -1.55
SMC1A-202ENST00000375340 CIDEAO60543 219 aa5.38□□□□□ -1.55
SMC1A-202ENST00000375340 TNFSF13O75888 250 aa5.38□□□□□ -1.55
SMC1A-202ENST00000375340 STAG3L2P0CL84 134 aa5.38□□□□□ -1.55
SMC1A-202ENST00000375340 STAG3L3P0CL85 134 aa5.38□□□□□ -1.55
SMC1A-202ENST00000375340 DUX4L9Q6RFH8 374 aaPredicted RBP5.38□□□□□ -1.55
SMC1A-202ENST00000375340 OSR1Q8TAX0 266 aaPredicted RBP5.38□□□□□ -1.55
SMC1A-202ENST00000375340 LINC00479Q96M42 142 aa5.38□□□□□ -1.55
SMC1A-202ENST00000375340 FOXC2Q99958 501 aa5.38□□□□□ -1.55
SMC1A-202ENST00000375340 TGFAP01135 160 aa5.38□□□□□ -1.55
SMC1A-202ENST00000375340 C1orf194Q5T5A4 169 aa5.38□□□□□ -1.55
SMC1A-202ENST00000375340 NUP35Q8NFH5 326 aa5.38□□□□□ -1.55
SMC1A-202ENST00000375340 OR1N2Q8NGR9 330 aa5.38□□□□□ -1.55
SMC1A-202ENST00000375340 ARHGAP21Q5T5U3 1957 aa5.38□□□□□ -1.55
SMC1A-202ENST00000375340 TRBV6-6A0A0A6YYG2 114 aa5.38□□□□□ -1.55
SMC1A-202ENST00000375340 F2Z2F3 143 aa5.38□□□□□ -1.55
SMC1A-202ENST00000375340 IGKV3-15P01624 115 aa5.38□□□□□ -1.55
SMC1A-202ENST00000375340 GLRXP35754 106 aa5.38□□□□□ -1.55
SMC1A-202ENST00000375340 TDGF1P3P51864 188 aa5.38□□□□□ -1.55
SMC1A-202ENST00000375340 NAA38Q9BRA0 125 aaKnown RBP5.38□□□□□ -1.55
SMC1A-202ENST00000375340 SLC25A2Q9BXI2 301 aa5.38□□□□□ -1.55
SMC1A-202ENST00000375340 A1L4Q6 167 aa5.38□□□□□ -1.55
SMC1A-202ENST00000375340 FAM90A9PA6NNJ1 464 aa5.38□□□□□ -1.55
SMC1A-202ENST00000375340 SMIM13P0DJ93 91 aa5.38□□□□□ -1.55
SMC1A-202ENST00000375340 GAFA1Q96PS6 74 aa5.38□□□□□ -1.55
SMC1A-202ENST00000375340 NOTCH3Q9UM47 2321 aa5.38□□□□□ -1.55
SMC1A-202ENST00000375340 SSBP2P81877 361 aaPredicted RBP5.38□□□□□ -1.55
SMC1A-202ENST00000375340 FBLN7Q53RD9 439 aa5.38□□□□□ -1.55
SMC1A-202ENST00000375340 Q6ZS49 121 aa5.38□□□□□ -1.55
SMC1A-202ENST00000375340 DEFB104AQ8WTQ1 72 aa5.38□□□□□ -1.55
SMC1A-202ENST00000375340 IGKV2-40A0A087WW87 121 aaPredicted RBP5.37□□□□□ -1.55
SMC1A-202ENST00000375340 IGKV2D-40P01614 121 aaPredicted RBP5.37□□□□□ -1.55
SMC1A-202ENST00000375340 FAM106CPP0CH98 169 aa5.37□□□□□ -1.55
SMC1A-202ENST00000375340 HERVK_113P61574 105 aa5.37□□□□□ -1.55
SMC1A-202ENST00000375340 TMEM200BQ69YZ2 307 aa5.37□□□□□ -1.55
SMC1A-202ENST00000375340 TMEM144Q7Z5S9 345 aa5.37□□□□□ -1.55
SMC1A-202ENST00000375340 OTORQ9NRC9 128 aa5.37□□□□□ -1.55
SMC1A-202ENST00000375340 RPUSD1Q9UJJ7 312 aaKnown RBP5.37□□□□□ -1.55
SMC1A-202ENST00000375340 INTS1Q8N201 2190 aaKnown RBP5.37□□□□□ -1.55
SMC1A-202ENST00000375340 TRAV9-2A0A087WT02 112 aa5.37□□□□□ -1.55
SMC1A-202ENST00000375340 LOC107984156A0A0G2JMH3 177 aa5.37□□□□□ -1.55
SMC1A-202ENST00000375340 A8MWP6 167 aa5.37□□□□□ -1.55
SMC1A-202ENST00000375340 LIPFP07098 398 aa5.37□□□□□ -1.55
SMC1A-202ENST00000375340 FOXL1Q12952 345 aa5.37□□□□□ -1.55
SMC1A-202ENST00000375340 ARL17AQ8IVW1 177 aa5.37□□□□□ -1.55
SMC1A-202ENST00000375340 OR10J6PQ8NGY7 276 aa5.37□□□□□ -1.55
SMC1A-202ENST00000375340 TRBV20OR9-2A0A075B6H5 130 aa5.37□□□□□ -1.55
SMC1A-202ENST00000375340 LRP4O75096 1905 aa5.37□□□□□ -1.55
SMC1A-202ENST00000375340 CIARTQ8N365 385 aaPredicted RBP5.37□□□□□ -1.55
SMC1A-202ENST00000375340 OSTCQ9NRP0 149 aa5.37□□□□□ -1.55
SMC1A-202ENST00000375340 ZNF138P52744 262 aa5.37□□□□□ -1.55
SMC1A-202ENST00000375340 ATP5G2Q06055 141 aa5.37□□□□□ -1.55
SMC1A-202ENST00000375340 RNASEH2CQ8TDP1 164 aaKnown RBP5.37□□□□□ -1.55
SMC1A-202ENST00000375340 NCKAP5O14513 1909 aa5.37□□□□□ -1.55
SMC1A-202ENST00000375340 RNASE4P34096 147 aaKnown RBP5.37□□□□□ -1.55
SMC1A-202ENST00000375340 PPIFP30405 207 aaKnown RBP5.37□□□□□ -1.55
SMC1A-202ENST00000375340 SCRT1Q9BWW7 348 aa5.37□□□□□ -1.55
SMC1A-202ENST00000375340 FGF23Q9GZV9 251 aaPredicted RBP5.37□□□□□ -1.55
SMC1A-202ENST00000375340 PCDH15Q96QU1 1955 aa5.37□□□□□ -1.55
SMC1A-202ENST00000375340 IGLV3-1P01715 115 aa5.37□□□□□ -1.55
SMC1A-202ENST00000375340 PRSS8Q16651 343 aa5.37□□□□□ -1.55
SMC1A-202ENST00000375340 TRAV8-6A0A0B4J262 113 aa5.37□□□□□ -1.55
SMC1A-202ENST00000375340 A0A1B0GUT8 65 aa5.37□□□□□ -1.55
SMC1A-202ENST00000375340 GPR183P32249 361 aa5.37□□□□□ -1.55
SMC1A-202ENST00000375340 BMI1P35226 326 aa5.37□□□□□ -1.55
SMC1A-202ENST00000375340 Q6ZWC4 215 aa5.37□□□□□ -1.55
SMC1A-202ENST00000375340 ZNF418Q8TF45 676 aaPredicted RBP5.37□□□□□ -1.55
SMC1A-202ENST00000375340 LOXL4Q96JB6 756 aa5.37□□□□□ -1.55
SMC1A-202ENST00000375340 NCOA6Q14686 2063 aaPredicted RBP5.37□□□□□ -1.55
SMC1A-202ENST00000375340 H3BUT2 72 aa5.36□□□□□ -1.55
SMC1A-202ENST00000375340 IGKV3-20P01619 116 aa5.36□□□□□ -1.55
SMC1A-202ENST00000375340 FAM74A4Q5TZK3 123 aa5.36□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms