RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 GAFA1Q96PS6 74 aa17.1■□□□□ 0.33
UPF3A-202ENST00000375299 LINC00574Q9H8X3 128 aa17.1■□□□□ 0.33
UPF3A-202ENST00000375299 OSR1Q8TAX0 266 aaPredicted RBP17.1■□□□□ 0.33
UPF3A-202ENST00000375299 PROCRQ9UNN8 238 aa17.1■□□□□ 0.33
UPF3A-202ENST00000375299 LOC400499M0QZD8 3231 aa17.09■□□□□ 0.33
UPF3A-202ENST00000375299 CACNA1GO43497 2377 aa17.09■□□□□ 0.33
UPF3A-202ENST00000375299 MYCNOSP40205 109 aa17.09■□□□□ 0.33
UPF3A-202ENST00000375299 HARBI1Q96MB7 349 aa17.09■□□□□ 0.33
UPF3A-202ENST00000375299 C1RLQ9NZP8 487 aa17.09■□□□□ 0.33
UPF3A-202ENST00000375299 RNF7Q9UBF6 113 aa17.09■□□□□ 0.33
UPF3A-202ENST00000375299 BDP1A6H8Y1 2624 aa17.09■□□□□ 0.33
UPF3A-202ENST00000375299 TCRBV4S1A1TA0A5B7 111 aa17.09■□□□□ 0.33
UPF3A-202ENST00000375299 OR4C46A6NHA9 309 aa17.09■□□□□ 0.33
UPF3A-202ENST00000375299 INS-IGF2F8WCM5 200 aa17.09■□□□□ 0.33
UPF3A-202ENST00000375299 FSTL3O95633 263 aa17.09■□□□□ 0.33
UPF3A-202ENST00000375299 HBBP68871 147 aa17.09■□□□□ 0.33
UPF3A-202ENST00000375299 ANKRD39Q53RE8 183 aa17.09■□□□□ 0.33
UPF3A-202ENST00000375299 DKK4Q9UBT3 224 aa17.09■□□□□ 0.33
UPF3A-202ENST00000375299 ALKBH2Q6NS38 261 aa17.08■□□□□ 0.33
UPF3A-202ENST00000375299 ZNF833PQ6ZTB9 187 aa17.08■□□□□ 0.33
UPF3A-202ENST00000375299 FNDC4Q9H6D8 234 aaPredicted RBP17.08■□□□□ 0.33
UPF3A-202ENST00000375299 ST20Q9HBF5 79 aa17.08■□□□□ 0.33
UPF3A-202ENST00000375299 SH2D7A6NKC9 451 aaPredicted RBP17.08■□□□□ 0.32
UPF3A-202ENST00000375299 TM4SF5O14894 197 aa17.08■□□□□ 0.32
UPF3A-202ENST00000375299 NKX2-8O15522 239 aa17.08■□□□□ 0.32
UPF3A-202ENST00000375299 CRXO43186 299 aaPredicted RBP17.08■□□□□ 0.32
UPF3A-202ENST00000375299 CCL11P51671 97 aa17.08■□□□□ 0.32
UPF3A-202ENST00000375299 VHLLQ6RSH7 139 aa17.08■□□□□ 0.32
UPF3A-202ENST00000375299 SSX8Q7RTT4 187 aa17.08■□□□□ 0.32
UPF3A-202ENST00000375299 TCF24Q7RTU0 167 aa17.08■□□□□ 0.32
UPF3A-202ENST00000375299 DEFB108BQ8NET1 73 aa17.08■□□□□ 0.32
UPF3A-202ENST00000375299 NPIPB3Q92617 1050 aa17.08■□□□□ 0.32
UPF3A-202ENST00000375299 SMIM12Q96EX1 92 aa17.08■□□□□ 0.32
UPF3A-202ENST00000375299 CCL13Q99616 98 aa17.08■□□□□ 0.32
UPF3A-202ENST00000375299 INTS1Q8N201 2190 aaKnown RBP17.08■□□□□ 0.32
UPF3A-202ENST00000375299 IGKV1D-37A0A075B6S9 117 aa17.07■□□□□ 0.32
UPF3A-202ENST00000375299 E7EUB6 86 aa17.07■□□□□ 0.32
UPF3A-202ENST00000375299 APOA2P02652 100 aa17.07■□□□□ 0.32
UPF3A-202ENST00000375299 GATA4P43694 442 aa17.07■□□□□ 0.32
UPF3A-202ENST00000375299 FAM216BQ8N7L0 139 aa17.07■□□□□ 0.32
UPF3A-202ENST00000375299 FDCSPQ8NFU4 85 aa17.07■□□□□ 0.32
UPF3A-202ENST00000375299 ST6GALNAC6Q969X2 333 aa17.07■□□□□ 0.32
UPF3A-202ENST00000375299 SARAFQ96BY9 339 aa17.07■□□□□ 0.32
UPF3A-202ENST00000375299 MRPL20Q9BYC9 149 aaKnown RBP17.07■□□□□ 0.32
UPF3A-202ENST00000375299 EPDR1Q9UM22 224 aa17.07■□□□□ 0.32
UPF3A-202ENST00000375299 M0R1B8 84 aa17.07■□□□□ 0.32
UPF3A-202ENST00000375299 CA7P43166 264 aa17.07■□□□□ 0.32
UPF3A-202ENST00000375299 PRR31Q5SQ13 230 aa17.07■□□□□ 0.32
UPF3A-202ENST00000375299 PDPNQ86YL7 162 aa17.07■□□□□ 0.32
UPF3A-202ENST00000375299 OR4C5Q8NGB2 326 aa17.07■□□□□ 0.32
UPF3A-202ENST00000375299 RPP21Q9H633 154 aaKnown RBP17.07■□□□□ 0.32
UPF3A-202ENST00000375299 SLC25A5P05141 298 aaKnown RBP17.06■□□□□ 0.32
UPF3A-202ENST00000375299 GLRXP35754 106 aa17.06■□□□□ 0.32
UPF3A-202ENST00000375299 CDKN1BP46527 198 aa17.06■□□□□ 0.32
UPF3A-202ENST00000375299 SRSF6Q13247 344 aaKnown RBP17.06■□□□□ 0.32
UPF3A-202ENST00000375299 LRRC10Q5BKY1 277 aa17.06■□□□□ 0.32
UPF3A-202ENST00000375299 LINC00305Q7Z4B0 112 aa17.06■□□□□ 0.32
UPF3A-202ENST00000375299 THAP8Q8NA92 274 aa17.06■□□□□ 0.32
UPF3A-202ENST00000375299 CHCHD1Q96BP2 118 aaKnown RBP17.06■□□□□ 0.32
UPF3A-202ENST00000375299 IGHV1-24A0A0C4DH33 117 aa17.06■□□□□ 0.32
UPF3A-202ENST00000375299 TP73-AS1Q9UF72 201 aa17.06■□□□□ 0.32
UPF3A-202ENST00000375299 SYS1-DBNDD2H3BUS1 97 aa17.05■□□□□ 0.32
UPF3A-202ENST00000375299 PLAUP00749 431 aa17.05■□□□□ 0.32
UPF3A-202ENST00000375299 ZNF788Q6ZQV5 615 aa17.05■□□□□ 0.32
UPF3A-202ENST00000375299 RBMXL3Q8N7X1 1067 aaKnown RBP17.05■□□□□ 0.32
UPF3A-202ENST00000375299 SGK494Q96LW2 274 aa17.05■□□□□ 0.32
UPF3A-202ENST00000375299 GPR82Q96P67 336 aa17.05■□□□□ 0.32
UPF3A-202ENST00000375299 KLF12Q9Y4X4 402 aa17.05■□□□□ 0.32
UPF3A-202ENST00000375299 TRAV30A0A087WSZ9 112 aa17.04■□□□□ 0.32
UPF3A-202ENST00000375299 M0QZ24 198 aa17.04■□□□□ 0.32
UPF3A-202ENST00000375299 FOXA3P55318 350 aaPredicted RBP17.04■□□□□ 0.32
UPF3A-202ENST00000375299 WT1-ASQ06250 92 aa17.04■□□□□ 0.32
UPF3A-202ENST00000375299 TMEM177Q53S58 311 aa17.04■□□□□ 0.32
UPF3A-202ENST00000375299 SOX21Q9Y651 276 aaPredicted RBP17.04■□□□□ 0.32
UPF3A-202ENST00000375299 DSPP15924 2871 aaKnown RBP17.04■□□□□ 0.32
UPF3A-202ENST00000375299 IGLV3-9A0A075B6K5 115 aa17.04■□□□□ 0.32
UPF3A-202ENST00000375299 IGHV3-48P01763 117 aa17.04■□□□□ 0.32
UPF3A-202ENST00000375299 MPV17L2Q567V2 206 aa17.04■□□□□ 0.32
UPF3A-202ENST00000375299 SAPCD1Q5SSQ6 148 aa17.04■□□□□ 0.32
UPF3A-202ENST00000375299 MLST8Q9BVC4 326 aa17.04■□□□□ 0.32
UPF3A-202ENST00000375299 PGPA6NDG6 321 aa17.03■□□□□ 0.32
UPF3A-202ENST00000375299 CGB1A6NKQ9 187 aa17.03■□□□□ 0.32
UPF3A-202ENST00000375299 A8MWL6 223 aa17.03■□□□□ 0.32
UPF3A-202ENST00000375299 MOSP00540 346 aa17.03■□□□□ 0.32
UPF3A-202ENST00000375299 VAMP3Q15836 100 aa17.03■□□□□ 0.32
UPF3A-202ENST00000375299 CT83Q5H943 113 aa17.03■□□□□ 0.32
UPF3A-202ENST00000375299 LINC00173Q6ZV60 143 aa17.03■□□□□ 0.32
UPF3A-202ENST00000375299 STXBP6Q8NFX7 210 aa17.03■□□□□ 0.32
UPF3A-202ENST00000375299 TMEM167AQ8TBQ9 72 aa17.03■□□□□ 0.32
UPF3A-202ENST00000375299 BLNKQ8WV28 456 aa17.03■□□□□ 0.32
UPF3A-202ENST00000375299 PRSS22Q9GZN4 317 aa17.03■□□□□ 0.32
UPF3A-202ENST00000375299 MRPL36Q9P0J6 103 aaKnown RBP17.03■□□□□ 0.32
UPF3A-202ENST00000375299 hADV38S2A0JD32 116 aa17.03■□□□□ 0.32
UPF3A-202ENST00000375299 LEPROTL1O95214 131 aa17.03■□□□□ 0.32
UPF3A-202ENST00000375299 CEACAM8P31997 349 aaPredicted RBP17.03■□□□□ 0.32
UPF3A-202ENST00000375299 SUB1P53999 127 aaKnown RBP eCLIP17.03■□□□□ 0.32
UPF3A-202ENST00000375299 LINC00322Q6ZN03 302 aaPredicted RBP17.03■□□□□ 0.32
UPF3A-202ENST00000375299 GTSF1Q8WW33 167 aa17.03■□□□□ 0.32
UPF3A-202ENST00000375299 RPH3ALQ9UNE2 315 aa17.03■□□□□ 0.32
UPF3A-202ENST00000375299 hDV102S1A0JD36 115 aa17.02■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms