RNA–Protein interactions for RNA: ENST00000374730.2

USP48-202, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-202ENST00000374730 S100A9P06702 114 aaKnown RBP3.83□□□□□ -1.8
USP48-202ENST00000374730 OR4A8P0C604 315 aa3.83□□□□□ -1.8
USP48-202ENST00000374730 STAG3L2P0CL84 134 aa3.83□□□□□ -1.8
USP48-202ENST00000374730 STAG3L3P0CL85 134 aa3.83□□□□□ -1.8
USP48-202ENST00000374730 NPY1RP25929 384 aa3.83□□□□□ -1.8
USP48-202ENST00000374730 RPS10P46783 165 aaKnown RBP3.83□□□□□ -1.8
USP48-202ENST00000374730 RPL23P62829 140 aaKnown RBP3.83□□□□□ -1.8
USP48-202ENST00000374730 PRCDQ00LT1 54 aa3.83□□□□□ -1.8
USP48-202ENST00000374730 KIAA0141Q14154 515 aaPredicted RBP3.83□□□□□ -1.8
USP48-202ENST00000374730 RTL8BQ17RB0 113 aa3.83□□□□□ -1.8
USP48-202ENST00000374730 TMEM241Q24JQ0 296 aa3.83□□□□□ -1.8
USP48-202ENST00000374730 BSXQ3C1V8 233 aa3.83□□□□□ -1.8
USP48-202ENST00000374730 UTF1Q5T230 341 aa3.83□□□□□ -1.8
USP48-202ENST00000374730 ZNF343Q6P1L6 599 aa3.83□□□□□ -1.8
USP48-202ENST00000374730 GFRALQ6UXV0 394 aa3.83□□□□□ -1.8
USP48-202ENST00000374730 SSX9Q7RTT3 188 aa3.83□□□□□ -1.8
USP48-202ENST00000374730 TGIF2LYQ8IUE0 185 aa3.83□□□□□ -1.8
USP48-202ENST00000374730 IQCF2Q8IXL9 164 aa3.83□□□□□ -1.8
USP48-202ENST00000374730 VKORC1L1Q8N0U8 176 aa3.83□□□□□ -1.8
USP48-202ENST00000374730 LYG1Q8N1E2 194 aa3.83□□□□□ -1.8
USP48-202ENST00000374730 LINC00311Q8N616 119 aa3.83□□□□□ -1.8
USP48-202ENST00000374730 FAM216BQ8N7L0 139 aa3.83□□□□□ -1.8
USP48-202ENST00000374730 OR4F5Q8NH21 305 aa3.83□□□□□ -1.8
USP48-202ENST00000374730 ZNF596Q8TC21 504 aa3.83□□□□□ -1.8
USP48-202ENST00000374730 FAM210BQ96KR6 192 aa3.83□□□□□ -1.8
USP48-202ENST00000374730 OR4F4Q96R69 305 aa3.83□□□□□ -1.8
USP48-202ENST00000374730 MGST2Q99735 147 aa3.83□□□□□ -1.8
USP48-202ENST00000374730 TXN2Q99757 166 aa3.83□□□□□ -1.8
USP48-202ENST00000374730 PARLQ9H300 379 aa3.83□□□□□ -1.8
USP48-202ENST00000374730 UBTD1Q9HAC8 227 aa3.83□□□□□ -1.8
USP48-202ENST00000374730 NPVFQ9HCQ7 196 aa3.83□□□□□ -1.8
USP48-202ENST00000374730 ENY2Q9NPA8 101 aa3.83□□□□□ -1.8
USP48-202ENST00000374730 SLC35D1Q9NTN3 355 aa3.83□□□□□ -1.8
USP48-202ENST00000374730 DOK5Q9P104 306 aa3.83□□□□□ -1.8
USP48-202ENST00000374730 TP53TG5Q9Y2B4 290 aa3.83□□□□□ -1.8
USP48-202ENST00000374730 PXMP4Q9Y6I8 212 aa3.83□□□□□ -1.8
USP48-202ENST00000374730 ARL2-SNX15V9GYD0 113 aa3.83□□□□□ -1.8
USP48-202ENST00000374730 PCNX1Q96RV3 2341 aa3.83□□□□□ -1.8
USP48-202ENST00000374730 PIEZO2Q9H5I5 2752 aa3.83□□□□□ -1.8
USP48-202ENST00000374730 SMG1Q96Q15 3661 aaKnown RBP3.82□□□□□ -1.8
USP48-202ENST00000374730 ADGRG4Q8IZF6 3080 aa3.82□□□□□ -1.8
USP48-202ENST00000374730 CEP295Q9C0D2 2601 aa3.82□□□□□ -1.8
USP48-202ENST00000374730 TLN1Q9Y490 2541 aaKnown RBP3.82□□□□□ -1.8
USP48-202ENST00000374730 PTPRQQ9UMZ3 2332 aa3.82□□□□□ -1.8
USP48-202ENST00000374730 POLEQ07864 2286 aa3.82□□□□□ -1.8
USP48-202ENST00000374730 PPIAL4EA0A075B759 164 aa3.82□□□□□ -1.8
USP48-202ENST00000374730 A0A1W2PPQ1 181 aa3.82□□□□□ -1.8
USP48-202ENST00000374730 A0A1W2PPV4 95 aa3.82□□□□□ -1.8
USP48-202ENST00000374730 C11orf94C9JXX5 98 aa3.82□□□□□ -1.8
USP48-202ENST00000374730 PRAC2D3DTV9 90 aa3.82□□□□□ -1.8
USP48-202ENST00000374730 PPIAL4DF5H284 164 aa3.82□□□□□ -1.8
USP48-202ENST00000374730 TMEM178BH3BS89 294 aa3.82□□□□□ -1.8
USP48-202ENST00000374730 H7BYZ3 331 aa3.82□□□□□ -1.8
USP48-202ENST00000374730 PHOX2AO14813 284 aa3.82□□□□□ -1.8
USP48-202ENST00000374730 HMGB3O15347 200 aaKnown RBP3.82□□□□□ -1.8
USP48-202ENST00000374730 HIST1H2BKO60814 126 aa3.82□□□□□ -1.8
USP48-202ENST00000374730 CLN5O75503 358 aa3.82□□□□□ -1.8
USP48-202ENST00000374730 NDUFB4O95168 129 aa3.82□□□□□ -1.8
USP48-202ENST00000374730 CXorf1O96002 111 aa3.82□□□□□ -1.8
USP48-202ENST00000374730 APOA2P02652 100 aa3.82□□□□□ -1.8
USP48-202ENST00000374730 HIST1H2BJP06899 126 aa3.82□□□□□ -1.8
USP48-202ENST00000374730 PFN1P07737 140 aaKnown RBP3.82□□□□□ -1.8
USP48-202ENST00000374730 CT45A6P0DMU7 189 aa3.82□□□□□ -1.8
USP48-202ENST00000374730 CT45A5P0DMU8 189 aa3.82□□□□□ -1.8
USP48-202ENST00000374730 CT45A7P0DMV0 189 aa3.82□□□□□ -1.8
USP48-202ENST00000374730 PPIAL4FP0DN26 164 aa3.82□□□□□ -1.8
USP48-202ENST00000374730 CD99P14209 185 aa3.82□□□□□ -1.8
USP48-202ENST00000374730 HIST1H2BOP23527 126 aa3.82□□□□□ -1.8
USP48-202ENST00000374730 HIST1H2BBP33778 126 aa3.82□□□□□ -1.8
USP48-202ENST00000374730 CDX1P47902 265 aaPredicted RBP3.82□□□□□ -1.8
USP48-202ENST00000374730 RPL29P47914 159 aaKnown RBP3.82□□□□□ -1.8
USP48-202ENST00000374730 GNG10P50151 68 aa3.82□□□□□ -1.8
USP48-202ENST00000374730 ZNF137PP52743 207 aa3.82□□□□□ -1.8
USP48-202ENST00000374730 HIST1H2BDP58876 126 aa3.82□□□□□ -1.8
USP48-202ENST00000374730 HIST1H2BCP62807 126 aa3.82□□□□□ -1.8
USP48-202ENST00000374730 BSPH1Q075Z2 132 aa3.82□□□□□ -1.8
USP48-202ENST00000374730 RAB31Q13636 194 aa3.82□□□□□ -1.8
USP48-202ENST00000374730 EFNB3Q15768 340 aa3.82□□□□□ -1.8
USP48-202ENST00000374730 ADIRFQ15847 76 aa3.82□□□□□ -1.8
USP48-202ENST00000374730 SSX2Q16385 188 aa3.82□□□□□ -1.8
USP48-202ENST00000374730 HIST2H2BEQ16778 126 aa3.82□□□□□ -1.8
USP48-202ENST00000374730 HIST2H2BFQ5QNW6 126 aaPredicted RBP3.82□□□□□ -1.8
USP48-202ENST00000374730 PRR27Q6MZM9 219 aa3.82□□□□□ -1.8
USP48-202ENST00000374730 SPNS3Q6ZMD2 512 aa3.82□□□□□ -1.8
USP48-202ENST00000374730 ASCL5Q7RTU5 278 aa3.82□□□□□ -1.8
USP48-202ENST00000374730 ABHD12Q8N2K0 398 aa3.82□□□□□ -1.8
USP48-202ENST00000374730 DEFB108BQ8NET1 73 aa3.82□□□□□ -1.8
USP48-202ENST00000374730 OR1L8Q8NGR8 309 aa3.82□□□□□ -1.8
USP48-202ENST00000374730 OR5B3Q8NH48 314 aa3.82□□□□□ -1.8
USP48-202ENST00000374730 OR4A5Q8NH83 315 aa3.82□□□□□ -1.8
USP48-202ENST00000374730 NANPQ8TBE9 248 aa3.82□□□□□ -1.8
USP48-202ENST00000374730 GATAD1Q8WUU5 269 aa3.82□□□□□ -1.8
USP48-202ENST00000374730 HIST1H2BHQ93079 126 aa3.82□□□□□ -1.8
USP48-202ENST00000374730 LEAP2Q969E1 77 aa3.82□□□□□ -1.8
USP48-202ENST00000374730 RPUSD4Q96CM3 377 aaKnown RBP3.82□□□□□ -1.8
USP48-202ENST00000374730 ZNF714Q96N38 554 aa3.82□□□□□ -1.8
USP48-202ENST00000374730 HIST1H2BNQ99877 126 aa3.82□□□□□ -1.8
USP48-202ENST00000374730 HIST1H2BMQ99879 126 aa3.82□□□□□ -1.8
USP48-202ENST00000374730 SSX3Q99909 188 aa3.82□□□□□ -1.8
USP48-202ENST00000374730 SRD5A3Q9H8P0 318 aa3.82□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms