RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 VKORC1L1Q8N0U8 176 aa11.53□□□□□ -0.56
HMGA1-203ENST00000374116 LYG1Q8N1E2 194 aa11.53□□□□□ -0.56
HMGA1-203ENST00000374116 H1FXQ92522 213 aaKnown RBP11.53□□□□□ -0.56
HMGA1-203ENST00000374116 SLC25A10Q9UBX3 287 aaPredicted RBP11.53□□□□□ -0.56
HMGA1-203ENST00000374116 RPUSD1Q9UJJ7 312 aaKnown RBP11.53□□□□□ -0.56
HMGA1-203ENST00000374116 WDR83OSQ9Y284 106 aa11.53□□□□□ -0.56
HMGA1-203ENST00000374116 LINC00312Q9Y6C7 94 aa11.53□□□□□ -0.56
HMGA1-203ENST00000374116 CCL25O15444 150 aa11.52□□□□□ -0.57
HMGA1-203ENST00000374116 FSTL3O95633 263 aa11.52□□□□□ -0.57
HMGA1-203ENST00000374116 LY6G6DO95868 133 aa11.52□□□□□ -0.57
HMGA1-203ENST00000374116 RPS16P62249 146 aaKnown RBP11.52□□□□□ -0.57
HMGA1-203ENST00000374116 UBE2V1Q13404 147 aa11.52□□□□□ -0.57
HMGA1-203ENST00000374116 SLC25A48Q6ZT89 311 aaKnown RBP11.52□□□□□ -0.57
HMGA1-203ENST00000374116 RPUSD4Q96CM3 377 aaKnown RBP11.52□□□□□ -0.57
HMGA1-203ENST00000374116 KAAG1Q9UBP8 84 aa11.52□□□□□ -0.57
HMGA1-203ENST00000374116 UQCR10Q9UDW1 63 aa11.52□□□□□ -0.57
HMGA1-203ENST00000374116 TRAV3A0A0B4J244 114 aa11.51□□□□□ -0.57
HMGA1-203ENST00000374116 C15orf61A6NNL5 157 aa11.51□□□□□ -0.57
HMGA1-203ENST00000374116 C22orf46C9J442 243 aa11.51□□□□□ -0.57
HMGA1-203ENST00000374116 F6UZH7 168 aa11.51□□□□□ -0.57
HMGA1-203ENST00000374116 NDUFB3O43676 98 aa11.51□□□□□ -0.57
HMGA1-203ENST00000374116 LINC00310P59036 64 aa11.51□□□□□ -0.57
HMGA1-203ENST00000374116 POU2AF1Q16633 256 aa11.51□□□□□ -0.57
HMGA1-203ENST00000374116 LINC01551Q86U37 167 aa11.51□□□□□ -0.57
HMGA1-203ENST00000374116 RNF2Q99496 336 aa11.51□□□□□ -0.57
HMGA1-203ENST00000374116 TP53TG3Q9ULZ0 132 aa11.51□□□□□ -0.57
HMGA1-203ENST00000374116 TCF19Q9Y242 345 aa11.51□□□□□ -0.57
HMGA1-203ENST00000374116 FOXA2Q9Y261 457 aaPredicted RBP11.51□□□□□ -0.57
HMGA1-203ENST00000374116 SONP18583 2426 aaKnown RBP11.51□□□□□ -0.57
HMGA1-203ENST00000374116 MSMBP08118 114 aa11.51□□□□□ -0.57
HMGA1-203ENST00000374116 PTTG1IPP53801 180 aa11.51□□□□□ -0.57
HMGA1-203ENST00000374116 LRRC10Q5BKY1 277 aa11.51□□□□□ -0.57
HMGA1-203ENST00000374116 OR4A47Q6IF82 309 aa11.51□□□□□ -0.57
HMGA1-203ENST00000374116 LINC01356Q8N9X3 169 aa11.51□□□□□ -0.57
HMGA1-203ENST00000374116 SLC24A4Q8NFF2 622 aa11.51□□□□□ -0.57
HMGA1-203ENST00000374116 SLC25A22Q9H936 323 aa11.51□□□□□ -0.57
HMGA1-203ENST00000374116 TMEM14BQ9NUH8 114 aa11.51□□□□□ -0.57
HMGA1-203ENST00000374116 HIF1ANQ9NWT6 349 aa11.51□□□□□ -0.57
HMGA1-203ENST00000374116 TET2Q6N021 2002 aaPredicted RBP11.5□□□□□ -0.57
HMGA1-203ENST00000374116 B4DSR2 109 aa11.5□□□□□ -0.57
HMGA1-203ENST00000374116 DLX1P56177 255 aa11.5□□□□□ -0.57
HMGA1-203ENST00000374116 HSPE1P61604 102 aaKnown RBP11.5□□□□□ -0.57
HMGA1-203ENST00000374116 PRB3Q04118 309 aaPredicted RBP11.5□□□□□ -0.57
HMGA1-203ENST00000374116 Q0VG73 95 aa11.5□□□□□ -0.57
HMGA1-203ENST00000374116 TDRG1Q3Y452 100 aa11.5□□□□□ -0.57
HMGA1-203ENST00000374116 FAM78BQ5VT40 261 aa11.5□□□□□ -0.57
HMGA1-203ENST00000374116 PAM16Q9Y3D7 125 aa11.5□□□□□ -0.57
HMGA1-203ENST00000374116 A0A0U1RQK1 487 aa11.49□□□□□ -0.57
HMGA1-203ENST00000374116 ZNF320A2RRD8 509 aa11.49□□□□□ -0.57
HMGA1-203ENST00000374116 PRSS46E5RG02 174 aa11.49□□□□□ -0.57
HMGA1-203ENST00000374116 RRHO14718 337 aa11.49□□□□□ -0.57
HMGA1-203ENST00000374116 OR5G3P0C626 314 aa11.49□□□□□ -0.57
HMGA1-203ENST00000374116 TFPI2P48307 235 aa11.49□□□□□ -0.57
HMGA1-203ENST00000374116 RTL8BQ17RB0 113 aa11.49□□□□□ -0.57
HMGA1-203ENST00000374116 Q8N7P7 452 aa11.49□□□□□ -0.57
HMGA1-203ENST00000374116 Q8N976 141 aa11.49□□□□□ -0.57
HMGA1-203ENST00000374116 OR5AU1Q8NGC0 362 aa11.49□□□□□ -0.57
HMGA1-203ENST00000374116 YAE1D1Q9NRH1 226 aa11.49□□□□□ -0.57
HMGA1-203ENST00000374116 LOC105371242A0A075B767 164 aa11.49□□□□□ -0.57
HMGA1-203ENST00000374116 ADMP35318 185 aa11.49□□□□□ -0.57
HMGA1-203ENST00000374116 OPRK1P41145 380 aa11.49□□□□□ -0.57
HMGA1-203ENST00000374116 RPL31P62899 125 aaKnown RBP11.49□□□□□ -0.57
HMGA1-203ENST00000374116 BATFQ16520 125 aa11.49□□□□□ -0.57
HMGA1-203ENST00000374116 IL17RELQ6ZVW7 336 aa11.49□□□□□ -0.57
HMGA1-203ENST00000374116 SMIM15Q7Z3B0 74 aa11.49□□□□□ -0.57
HMGA1-203ENST00000374116 STPG4Q8N801 248 aa11.49□□□□□ -0.57
HMGA1-203ENST00000374116 TMEM186Q96B77 213 aa11.49□□□□□ -0.57
HMGA1-203ENST00000374116 ENY2Q9NPA8 101 aa11.49□□□□□ -0.57
HMGA1-203ENST00000374116 PRNDQ9UKY0 176 aa11.49□□□□□ -0.57
HMGA1-203ENST00000374116 FOXH1O75593 365 aa11.48□□□□□ -0.57
HMGA1-203ENST00000374116 REG1AP05451 166 aa11.48□□□□□ -0.57
HMGA1-203ENST00000374116 CT45A6P0DMU7 189 aa11.48□□□□□ -0.57
HMGA1-203ENST00000374116 CT45A5P0DMU8 189 aa11.48□□□□□ -0.57
HMGA1-203ENST00000374116 CT45A7P0DMV0 189 aa11.48□□□□□ -0.57
HMGA1-203ENST00000374116 CDC34P49427 236 aaPredicted RBP11.48□□□□□ -0.57
HMGA1-203ENST00000374116 UBE2G2P60604 165 aa11.48□□□□□ -0.57
HMGA1-203ENST00000374116 CST9LP1Q5W188 147 aa11.48□□□□□ -0.57
HMGA1-203ENST00000374116 TMEM200BQ69YZ2 307 aa11.48□□□□□ -0.57
HMGA1-203ENST00000374116 TREML4Q6UXN2 200 aa11.48□□□□□ -0.57
HMGA1-203ENST00000374116 ABHD12Q8N2K0 398 aa11.48□□□□□ -0.57
HMGA1-203ENST00000374116 C1orf159Q96HA4 380 aa11.48□□□□□ -0.57
HMGA1-203ENST00000374116 ZNF714Q96N38 554 aa11.48□□□□□ -0.57
HMGA1-203ENST00000374116 HSPB9Q9BQS6 159 aa11.48□□□□□ -0.57
HMGA1-203ENST00000374116 ALKBH7Q9BT30 221 aaPredicted RBP11.48□□□□□ -0.57
HMGA1-203ENST00000374116 ZNF257Q9Y2Q1 563 aa11.48□□□□□ -0.57
HMGA1-203ENST00000374116 LAMTOR2Q9Y2Q5 125 aa11.48□□□□□ -0.57
HMGA1-203ENST00000374116 MRPS16Q9Y3D3 137 aaKnown RBP11.48□□□□□ -0.57
HMGA1-203ENST00000374116 COX11Q9Y6N1 276 aa11.48□□□□□ -0.57
HMGA1-203ENST00000374116 CUBNO60494 3623 aa11.48□□□□□ -0.57
HMGA1-203ENST00000374116 IGHV2-70DA0A0C4DH43 119 aa11.47□□□□□ -0.57
HMGA1-203ENST00000374116 A0A1B0GUS0 222 aa11.47□□□□□ -0.57
HMGA1-203ENST00000374116 HMGB3O15347 200 aaKnown RBP11.47□□□□□ -0.57
HMGA1-203ENST00000374116 AVPP01185 164 aa11.47□□□□□ -0.57
HMGA1-203ENST00000374116 IGLC2P0DOY2 106 aa11.47□□□□□ -0.57
HMGA1-203ENST00000374116 IGLC3P0DOY3 106 aa11.47□□□□□ -0.57
HMGA1-203ENST00000374116 HNF1AP20823 631 aa11.47□□□□□ -0.57
HMGA1-203ENST00000374116 PAX2Q02962 417 aa11.47□□□□□ -0.57
HMGA1-203ENST00000374116 ZNF833PQ6ZTB9 187 aa11.47□□□□□ -0.57
HMGA1-203ENST00000374116 OR4F5Q8NH21 305 aa11.47□□□□□ -0.57
HMGA1-203ENST00000374116 OR4F4Q96R69 305 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms