RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 LYZL2Q7Z4W2 148 aa15.99■□□□□ 0.15
CCDC28B-201ENST00000373602 LYG2Q86SG7 212 aa15.99■□□□□ 0.15
CCDC28B-201ENST00000373602 OR1S2Q8NGQ3 325 aa15.99■□□□□ 0.15
CCDC28B-201ENST00000373602 V9GYH0 126 aa15.99■□□□□ 0.15
CCDC28B-201ENST00000373602 IGLC1P0CG04 106 aa15.98■□□□□ 0.15
CCDC28B-201ENST00000373602 ANXA3P12429 323 aa15.98■□□□□ 0.15
CCDC28B-201ENST00000373602 NPY1RP25929 384 aa15.98■□□□□ 0.15
CCDC28B-201ENST00000373602 RND2P52198 227 aa15.98■□□□□ 0.15
CCDC28B-201ENST00000373602 AP3S2P59780 193 aa15.98■□□□□ 0.15
CCDC28B-201ENST00000373602 RPL11P62913 178 aaKnown RBP15.98■□□□□ 0.15
CCDC28B-201ENST00000373602 SRPXP78539 464 aa15.98■□□□□ 0.15
CCDC28B-201ENST00000373602 PYDC2Q56P42 97 aa15.98■□□□□ 0.15
CCDC28B-201ENST00000373602 NOXA1Q86UR1 476 aa15.98■□□□□ 0.15
CCDC28B-201ENST00000373602 LGI3Q8N145 548 aa15.98■□□□□ 0.15
CCDC28B-201ENST00000373602 CSTL1Q9H114 145 aa15.98■□□□□ 0.15
CCDC28B-201ENST00000373602 HSPB7Q9UBY9 170 aa15.98■□□□□ 0.15
CCDC28B-201ENST00000373602 LYSTQ99698 3801 aa15.97■□□□□ 0.15
CCDC28B-201ENST00000373602 MPTX1A8MV57 137 aa15.97■□□□□ 0.15
CCDC28B-201ENST00000373602 JTBO76095 146 aa15.97■□□□□ 0.15
CCDC28B-201ENST00000373602 YPEL3P61236 119 aaPredicted RBP15.97■□□□□ 0.15
CCDC28B-201ENST00000373602 SMCO1Q147U7 214 aa15.97■□□□□ 0.15
CCDC28B-201ENST00000373602 ETFRF1Q6IPR1 90 aa15.97■□□□□ 0.15
CCDC28B-201ENST00000373602 TOMM5Q8N4H5 51 aa15.97■□□□□ 0.15
CCDC28B-201ENST00000373602 CCDC160A6NGH7 325 aa15.96■□□□□ 0.15
CCDC28B-201ENST00000373602 OR10J1P30954 320 aa15.96■□□□□ 0.15
CCDC28B-201ENST00000373602 P2RY1P47900 373 aa15.96■□□□□ 0.15
CCDC28B-201ENST00000373602 EWSR1Q01844 656 aaKnown RBP eCLIP15.96■□□□□ 0.15
CCDC28B-201ENST00000373602 ZNF79Q15937 498 aa15.96■□□□□ 0.15
CCDC28B-201ENST00000373602 FAM24BQ8N5W8 94 aa15.96■□□□□ 0.15
CCDC28B-201ENST00000373602 Q8WTZ3 238 aa15.96■□□□□ 0.15
CCDC28B-201ENST00000373602 U3KQ87 197 aa15.96■□□□□ 0.15
CCDC28B-201ENST00000373602 U3KQE9 123 aa15.96■□□□□ 0.15
CCDC28B-201ENST00000373602 ATF4P18848 351 aaPredicted RBP15.95■□□□□ 0.14
CCDC28B-201ENST00000373602 S100A5P33763 92 aa15.95■□□□□ 0.14
CCDC28B-201ENST00000373602 DEFB131AP59861 70 aa15.95■□□□□ 0.14
CCDC28B-201ENST00000373602 DTD1Q8TEA8 209 aa15.95■□□□□ 0.14
CCDC28B-201ENST00000373602 DEDD2Q8WXF8 326 aa15.95■□□□□ 0.14
CCDC28B-201ENST00000373602 NARS2Q96I59 477 aaKnown RBP15.95■□□□□ 0.14
CCDC28B-201ENST00000373602 RBM38Q9H0Z9 239 aaKnown RBP15.95■□□□□ 0.14
CCDC28B-201ENST00000373602 RBKSQ9H477 322 aa15.95■□□□□ 0.14
CCDC28B-201ENST00000373602 RABAC1Q9UI14 185 aa15.95■□□□□ 0.14
CCDC28B-201ENST00000373602 PIGBOS1A0A0B4J2F0 54 aa15.94■□□□□ 0.14
CCDC28B-201ENST00000373602 IFNA10P01566 189 aa15.94■□□□□ 0.14
CCDC28B-201ENST00000373602 RBMS2Q15434 407 aaKnown RBP15.94■□□□□ 0.14
CCDC28B-201ENST00000373602 TMEM128Q5BJH2 165 aa15.94■□□□□ 0.14
CCDC28B-201ENST00000373602 TMED4Q7Z7H5 227 aa15.94■□□□□ 0.14
CCDC28B-201ENST00000373602 CCDC190Q86UF4 302 aa15.94■□□□□ 0.14
CCDC28B-201ENST00000373602 NPIPB3Q92617 1050 aa15.94■□□□□ 0.14
CCDC28B-201ENST00000373602 GRAMD2BQ96HH9 432 aa15.94■□□□□ 0.14
CCDC28B-201ENST00000373602 DUXBA0A1W2PPF3 345 aa15.93■□□□□ 0.14
CCDC28B-201ENST00000373602 K7EQG2 157 aa15.93■□□□□ 0.14
CCDC28B-201ENST00000373602 LEMD1Q68G75 181 aa15.93■□□□□ 0.14
CCDC28B-201ENST00000373602 STXBP6Q8NFX7 210 aa15.93■□□□□ 0.14
CCDC28B-201ENST00000373602 GATAD1Q8WUU5 269 aa15.93■□□□□ 0.14
CCDC28B-201ENST00000373602 HNRNPCP07910 306 aaKnown RBP eCLIP15.92■□□□□ 0.14
CCDC28B-201ENST00000373602 ATP5IP56385 69 aaPredicted RBP15.92■□□□□ 0.14
CCDC28B-201ENST00000373602 OR1S1Q8NH92 325 aa15.92■□□□□ 0.14
CCDC28B-201ENST00000373602 ACY3Q96HD9 319 aa15.92■□□□□ 0.14
CCDC28B-201ENST00000373602 SLC25A21Q9BQT8 299 aaPredicted RBP15.92■□□□□ 0.14
CCDC28B-201ENST00000373602 CXorf65A6NEN9 183 aa15.91■□□□□ 0.14
CCDC28B-201ENST00000373602 ZNF701M0R085 212 aaPredicted RBP15.91■□□□□ 0.14
CCDC28B-201ENST00000373602 PITX3O75364 302 aa15.91■□□□□ 0.14
CCDC28B-201ENST00000373602 TOMM40O96008 361 aa15.91■□□□□ 0.14
CCDC28B-201ENST00000373602 PMS2P11Q13670 270 aa15.91■□□□□ 0.14
CCDC28B-201ENST00000373602 USF2Q15853 346 aaPredicted RBP15.91■□□□□ 0.14
CCDC28B-201ENST00000373602 C16orf54Q6UWD8 224 aa15.91■□□□□ 0.14
CCDC28B-201ENST00000373602 TMEM217Q8N7C4 229 aa15.91■□□□□ 0.14
CCDC28B-201ENST00000373602 LRTM2Q8N967 370 aa15.91■□□□□ 0.14
CCDC28B-201ENST00000373602 DCANP1Q8TF63 244 aa15.91■□□□□ 0.14
CCDC28B-201ENST00000373602 HELTA6NFD8 242 aa15.9■□□□□ 0.14
CCDC28B-201ENST00000373602 IL4P05112 153 aa15.9■□□□□ 0.14
CCDC28B-201ENST00000373602 RD3LP0DJH9 198 aa15.9■□□□□ 0.14
CCDC28B-201ENST00000373602 EIF2B2P49770 351 aaKnown RBP15.9■□□□□ 0.14
CCDC28B-201ENST00000373602 GLMPQ8WWB7 406 aa15.9■□□□□ 0.14
CCDC28B-201ENST00000373602 RARRES2Q99969 163 aa15.9■□□□□ 0.14
CCDC28B-201ENST00000373602 NUPR2A6NF83 97 aa15.89■□□□□ 0.13
CCDC28B-201ENST00000373602 CA1P00915 261 aaPredicted RBP15.89■□□□□ 0.13
CCDC28B-201ENST00000373602 IFNA4P05014 189 aa15.89■□□□□ 0.13
CCDC28B-201ENST00000373602 SLC25A6P12236 298 aa15.89■□□□□ 0.13
CCDC28B-201ENST00000373602 VAMP1P23763 118 aa15.89■□□□□ 0.13
CCDC28B-201ENST00000373602 STHQ8IWL8 128 aa15.89■□□□□ 0.13
CCDC28B-201ENST00000373602 SFT2D2O95562 160 aa15.88■□□□□ 0.13
CCDC28B-201ENST00000373602 PSG1P11464 419 aa15.88■□□□□ 0.13
CCDC28B-201ENST00000373602 GPX4P36969 197 aaPredicted RBP15.88■□□□□ 0.13
CCDC28B-201ENST00000373602 AP2S1P53680 142 aaPredicted RBP15.88■□□□□ 0.13
CCDC28B-201ENST00000373602 OR11H2Q8NH07 326 aa15.88■□□□□ 0.13
CCDC28B-201ENST00000373602 SRRQ9GZT4 340 aa15.88■□□□□ 0.13
CCDC28B-201ENST00000373602 PLECQ15149 4684 aaKnown RBP15.87■□□□□ 0.13
CCDC28B-201ENST00000373602 ZNF688P0C7X2 276 aa15.87■□□□□ 0.13
CCDC28B-201ENST00000373602 DHRS2Q13268 280 aa15.87■□□□□ 0.13
CCDC28B-201ENST00000373602 PPP1R1AQ13522 171 aa15.87■□□□□ 0.13
CCDC28B-201ENST00000373602 SPANXN2Q5MJ10 180 aa15.87■□□□□ 0.13
CCDC28B-201ENST00000373602 CEMP1Q6PRD7 247 aaPredicted RBP15.87■□□□□ 0.13
CCDC28B-201ENST00000373602 TRPT1Q86TN4 253 aaKnown RBP15.87■□□□□ 0.13
CCDC28B-201ENST00000373602 TMED3Q9Y3Q3 217 aa15.87■□□□□ 0.13
CCDC28B-201ENST00000373602 ALMS1Q8TCU4 4167 aa15.87■□□□□ 0.13
CCDC28B-201ENST00000373602 FAM90A26D6RGX4 464 aa15.86■□□□□ 0.13
CCDC28B-201ENST00000373602 BUB3O43684 328 aa15.86■□□□□ 0.13
CCDC28B-201ENST00000373602 GAMTQ14353 236 aa15.86■□□□□ 0.13
CCDC28B-201ENST00000373602 CENPSQ8N2Z9 138 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms