RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 IQCF2Q8IXL9 164 aa10.85□□□□□ -0.67
PTPRF-202ENST00000372405 TRGV9Q99603 122 aa10.85□□□□□ -0.67
PTPRF-202ENST00000372405 TNFRSF19Q9NS68 423 aa10.85□□□□□ -0.67
PTPRF-202ENST00000372405 FUT9Q9Y231 359 aa10.85□□□□□ -0.67
PTPRF-202ENST00000372405 MDFIC2A0A1B0GVS7 189 aa10.84□□□□□ -0.67
PTPRF-202ENST00000372405 J3QLI3 93 aa10.84□□□□□ -0.67
PTPRF-202ENST00000372405 ATP6V0E1O15342 81 aa10.84□□□□□ -0.67
PTPRF-202ENST00000372405 IGLC1P0CG04 106 aa10.84□□□□□ -0.67
PTPRF-202ENST00000372405 MEF2BQ02080 365 aaPredicted RBP10.84□□□□□ -0.67
PTPRF-202ENST00000372405 SOHLH1Q5JUK2 328 aa10.84□□□□□ -0.67
PTPRF-202ENST00000372405 FAM90A2PQ658T7 463 aa10.84□□□□□ -0.67
PTPRF-202ENST00000372405 RBMS3Q6XE24 437 aaKnown RBP10.84□□□□□ -0.67
PTPRF-202ENST00000372405 OR5T1Q8NG75 326 aa10.84□□□□□ -0.67
PTPRF-202ENST00000372405 OR4X1Q8NH49 305 aa10.84□□□□□ -0.67
PTPRF-202ENST00000372405 SGMS2Q8NHU3 365 aa10.84□□□□□ -0.67
PTPRF-202ENST00000372405 MOB4Q9Y3A3 225 aa10.84□□□□□ -0.67
PTPRF-202ENST00000372405 CCDC168Q8NDH2 2452 aa10.84□□□□□ -0.67
PTPRF-202ENST00000372405 H3BUX3 64 aa10.83□□□□□ -0.68
PTPRF-202ENST00000372405 PAGE4O60829 102 aa10.83□□□□□ -0.68
PTPRF-202ENST00000372405 CXorf1O96002 111 aa10.83□□□□□ -0.68
PTPRF-202ENST00000372405 IFNA1P01562 189 aa10.83□□□□□ -0.68
PTPRF-202ENST00000372405 PSMB3P49720 205 aa10.83□□□□□ -0.68
PTPRF-202ENST00000372405 CEBPGP53567 150 aa10.83□□□□□ -0.68
PTPRF-202ENST00000372405 SELENOTP62341 195 aa10.83□□□□□ -0.68
PTPRF-202ENST00000372405 BCL6BQ8N143 479 aaPredicted RBP10.83□□□□□ -0.68
PTPRF-202ENST00000372405 CLRN3Q8NCR9 226 aa10.83□□□□□ -0.68
PTPRF-202ENST00000372405 OR1L6Q8NGR2 347 aa10.83□□□□□ -0.68
PTPRF-202ENST00000372405 ZNF503Q96F45 646 aa10.83□□□□□ -0.68
PTPRF-202ENST00000372405 MANBALQ9NQG1 85 aa10.83□□□□□ -0.68
PTPRF-202ENST00000372405 DOK5Q9P104 306 aa10.83□□□□□ -0.68
PTPRF-202ENST00000372405 MXRA5Q9NR99 2828 aa10.83□□□□□ -0.68
PTPRF-202ENST00000372405 A6NDX4 124 aa10.83□□□□□ -0.68
PTPRF-202ENST00000372405 FAM74A7A6NL05 159 aa10.83□□□□□ -0.68
PTPRF-202ENST00000372405 LY6EQ16553 131 aa10.83□□□□□ -0.68
PTPRF-202ENST00000372405 FAM74A3Q4VXF1 159 aa10.83□□□□□ -0.68
PTPRF-202ENST00000372405 C22orf15Q8WYQ4 148 aa10.83□□□□□ -0.68
PTPRF-202ENST00000372405 S4R3C0 116 aa10.83□□□□□ -0.68
PTPRF-202ENST00000372405 LOC105371267A0A1B0GV96 52 aa10.82□□□□□ -0.68
PTPRF-202ENST00000372405 DNASE2O00115 360 aaPredicted RBP10.82□□□□□ -0.68
PTPRF-202ENST00000372405 SNAPINO95295 136 aa10.82□□□□□ -0.68
PTPRF-202ENST00000372405 FSHBP01225 129 aa10.82□□□□□ -0.68
PTPRF-202ENST00000372405 IGKV1-17P01599 117 aa10.82□□□□□ -0.68
PTPRF-202ENST00000372405 GCHFRP30047 84 aa10.82□□□□□ -0.68
PTPRF-202ENST00000372405 WFDC11Q8NEX6 87 aa10.82□□□□□ -0.68
PTPRF-202ENST00000372405 UHRF2Q96PU4 802 aa10.82□□□□□ -0.68
PTPRF-202ENST00000372405 C19orf24Q9BVV8 132 aa10.82□□□□□ -0.68
PTPRF-202ENST00000372405 DNAJC4Q9NNZ3 241 aa10.82□□□□□ -0.68
PTPRF-202ENST00000372405 TRAV5A0A0B4J249 113 aa10.81□□□□□ -0.68
PTPRF-202ENST00000372405 F8W735 103 aaPredicted RBP10.81□□□□□ -0.68
PTPRF-202ENST00000372405 G3V318 75 aa10.81□□□□□ -0.68
PTPRF-202ENST00000372405 NDUFB8O95169 186 aa10.81□□□□□ -0.68
PTPRF-202ENST00000372405 UBE2G2P60604 165 aa10.81□□□□□ -0.68
PTPRF-202ENST00000372405 ECSCRQ19T08 205 aa10.81□□□□□ -0.68
PTPRF-202ENST00000372405 FAM167A-AS1Q96KT0 104 aa10.81□□□□□ -0.68
PTPRF-202ENST00000372405 CLN5O75503 358 aa10.81□□□□□ -0.68
PTPRF-202ENST00000372405 ATP5G3P48201 142 aa10.81□□□□□ -0.68
PTPRF-202ENST00000372405 TIGITQ495A1 244 aa10.81□□□□□ -0.68
PTPRF-202ENST00000372405 UNQ5815/PRO19632Q6UWF5 114 aa10.81□□□□□ -0.68
PTPRF-202ENST00000372405 CIARTQ8N365 385 aaPredicted RBP10.81□□□□□ -0.68
PTPRF-202ENST00000372405 FAM110DQ8TAY7 271 aaPredicted RBP10.81□□□□□ -0.68
PTPRF-202ENST00000372405 TMUB1Q9BVT8 246 aa10.81□□□□□ -0.68
PTPRF-202ENST00000372405 AKAP9Q99996 3911 aa10.81□□□□□ -0.68
PTPRF-202ENST00000372405 NUPL2O15504 423 aaKnown RBP10.8□□□□□ -0.68
PTPRF-202ENST00000372405 OR2J3O76001 311 aa10.8□□□□□ -0.68
PTPRF-202ENST00000372405 KLK9Q2XQG4 91 aa10.8□□□□□ -0.68
PTPRF-202ENST00000372405 DEFB112Q30KQ8 113 aa10.8□□□□□ -0.68
PTPRF-202ENST00000372405 AWAT1Q58HT5 328 aa10.8□□□□□ -0.68
PTPRF-202ENST00000372405 C20orf24Q9BUV8 137 aa10.8□□□□□ -0.68
PTPRF-202ENST00000372405 SLC25A2Q9BXI2 301 aa10.8□□□□□ -0.68
PTPRF-202ENST00000372405 TECRQ9NZ01 308 aaKnown RBP10.8□□□□□ -0.68
PTPRF-202ENST00000372405 KLK9Q9UKQ9 250 aa10.8□□□□□ -0.68
PTPRF-202ENST00000372405 YTHDF2Q9Y5A9 579 aaKnown RBP10.8□□□□□ -0.68
PTPRF-202ENST00000372405 PUS1Q9Y606 427 aaKnown RBP eCLIP10.8□□□□□ -0.68
PTPRF-202ENST00000372405 FLNAP21333 2647 aaKnown RBP10.8□□□□□ -0.68
PTPRF-202ENST00000372405 C11orf94C9JXX5 98 aa10.79□□□□□ -0.68
PTPRF-202ENST00000372405 H3BQ15 152 aa10.79□□□□□ -0.68
PTPRF-202ENST00000372405 COX7A2P2O60397 106 aa10.79□□□□□ -0.68
PTPRF-202ENST00000372405 PSG1P11464 419 aa10.79□□□□□ -0.68
PTPRF-202ENST00000372405 NPPCP23582 126 aa10.79□□□□□ -0.68
PTPRF-202ENST00000372405 TAGLN2P37802 199 aaKnown RBP10.79□□□□□ -0.68
PTPRF-202ENST00000372405 KIAA0141Q14154 515 aaPredicted RBP10.79□□□□□ -0.68
PTPRF-202ENST00000372405 C19orf54Q5BKX5 351 aa10.79□□□□□ -0.68
PTPRF-202ENST00000372405 C10orf113Q5VZT2 155 aa10.79□□□□□ -0.68
PTPRF-202ENST00000372405 TMEM88Q6PEY1 159 aa10.79□□□□□ -0.68
PTPRF-202ENST00000372405 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.79□□□□□ -0.68
PTPRF-202ENST00000372405 OR4F5Q8NH21 305 aa10.79□□□□□ -0.68
PTPRF-202ENST00000372405 OR4F4Q96R69 305 aa10.79□□□□□ -0.68
PTPRF-202ENST00000372405 PFDN5Q99471 154 aa10.79□□□□□ -0.68
PTPRF-202ENST00000372405 MRPL32Q9BYC8 188 aaKnown RBP10.79□□□□□ -0.68
PTPRF-202ENST00000372405 C8orf88P0DMB2 117 aa10.79□□□□□ -0.68
PTPRF-202ENST00000372405 ORM2P19652 201 aa10.79□□□□□ -0.68
PTPRF-202ENST00000372405 AKR1C3P42330 323 aa10.79□□□□□ -0.68
PTPRF-202ENST00000372405 PLP1P60201 277 aa10.79□□□□□ -0.68
PTPRF-202ENST00000372405 AKIRIN2Q53H80 203 aa10.79□□□□□ -0.68
PTPRF-202ENST00000372405 CBLN2Q8IUK8 224 aa10.79□□□□□ -0.68
PTPRF-202ENST00000372405 OR51G1Q8NGK1 321 aa10.79□□□□□ -0.68
PTPRF-202ENST00000372405 OR1L4Q8NGR5 311 aa10.79□□□□□ -0.68
PTPRF-202ENST00000372405 OR1B1Q8NGR6 318 aa10.79□□□□□ -0.68
PTPRF-202ENST00000372405 ZNF355PQ9NSJ1 428 aa10.79□□□□□ -0.68
PTPRF-202ENST00000372405 TLN2Q9Y4G6 2542 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms