RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 TSPAN5P62079 268 aa9.85□□□□□ -0.83
VPS29-201ENST00000360579 C16orf54Q6UWD8 224 aa9.85□□□□□ -0.83
VPS29-201ENST00000360579 Q8N1X5 172 aa9.85□□□□□ -0.83
VPS29-201ENST00000360579 GLMPQ8WWB7 406 aa9.85□□□□□ -0.83
VPS29-201ENST00000360579 VCX3BQ9H321 246 aa9.85□□□□□ -0.83
VPS29-201ENST00000360579 ENY2Q9NPA8 101 aa9.85□□□□□ -0.83
VPS29-201ENST00000360579 NRN1Q9NPD7 142 aa9.85□□□□□ -0.83
VPS29-201ENST00000360579 HLA-DRB4X5D2U9 266 aa9.85□□□□□ -0.83
VPS29-201ENST00000360579 RPS10-NUDT3A0A1W2PQS6 291 aa9.84□□□□□ -0.83
VPS29-201ENST00000360579 ATG12O94817 140 aa9.84□□□□□ -0.83
VPS29-201ENST00000360579 IGKV1-17P01599 117 aa9.84□□□□□ -0.83
VPS29-201ENST00000360579 HRH1P35367 487 aa9.84□□□□□ -0.83
VPS29-201ENST00000360579 TIGITQ495A1 244 aa9.84□□□□□ -0.83
VPS29-201ENST00000360579 TMEM69Q5SWH9 247 aa9.84□□□□□ -0.83
VPS29-201ENST00000360579 FAM222AQ5U5X8 452 aa9.84□□□□□ -0.83
VPS29-201ENST00000360579 Q8WTZ3 238 aa9.84□□□□□ -0.83
VPS29-201ENST00000360579 FNDC4Q9H6D8 234 aaPredicted RBP9.84□□□□□ -0.83
VPS29-201ENST00000360579 GSTZ1O43708 216 aaPredicted RBP9.83□□□□□ -0.84
VPS29-201ENST00000360579 HTN3P15516 51 aa9.83□□□□□ -0.84
VPS29-201ENST00000360579 NKX2-1P43699 371 aaPredicted RBP9.83□□□□□ -0.84
VPS29-201ENST00000360579 UCP3P55916 312 aa9.83□□□□□ -0.84
VPS29-201ENST00000360579 TAS2R20P59543 309 aa9.83□□□□□ -0.84
VPS29-201ENST00000360579 SPARTQ8N0X7 666 aa9.83□□□□□ -0.84
VPS29-201ENST00000360579 C15orf53Q8NAA6 179 aa9.83□□□□□ -0.84
VPS29-201ENST00000360579 OR1S2Q8NGQ3 325 aa9.83□□□□□ -0.84
VPS29-201ENST00000360579 MRPL36Q9P0J6 103 aaKnown RBP9.83□□□□□ -0.84
VPS29-201ENST00000360579 IGHV3OR16-12A0A075B7B8 117 aa9.82□□□□□ -0.84
VPS29-201ENST00000360579 A0A0B4J293 547 aa9.82□□□□□ -0.84
VPS29-201ENST00000360579 LOC100506127A0A0U1RQW1 187 aa9.82□□□□□ -0.84
VPS29-201ENST00000360579 HLA-DMAP28067 261 aa9.82□□□□□ -0.84
VPS29-201ENST00000360579 PRSS3P35030 304 aa9.82□□□□□ -0.84
VPS29-201ENST00000360579 AKR1C2P52895 323 aa9.82□□□□□ -0.84
VPS29-201ENST00000360579 YPEL3P61236 119 aaPredicted RBP9.82□□□□□ -0.84
VPS29-201ENST00000360579 UBE2NLQ5JXB2 153 aa9.82□□□□□ -0.84
VPS29-201ENST00000360579 TMEM88Q6PEY1 159 aa9.82□□□□□ -0.84
VPS29-201ENST00000360579 SIGLEC15Q6ZMC9 328 aa9.82□□□□□ -0.84
VPS29-201ENST00000360579 LYSMD2Q8IV50 215 aa9.82□□□□□ -0.84
VPS29-201ENST00000360579 CROCCP3Q8IVE0 287 aa9.82□□□□□ -0.84
VPS29-201ENST00000360579 ATG101Q9BSB4 218 aa9.82□□□□□ -0.84
VPS29-201ENST00000360579 IGLC1P0CG04 106 aa9.81□□□□□ -0.84
VPS29-201ENST00000360579 SLC25A4P12235 298 aa9.81□□□□□ -0.84
VPS29-201ENST00000360579 ETV6P41212 452 aa9.81□□□□□ -0.84
VPS29-201ENST00000360579 MLANAQ16655 118 aa9.81□□□□□ -0.84
VPS29-201ENST00000360579 IZUMO4Q1ZYL8 232 aa9.81□□□□□ -0.84
VPS29-201ENST00000360579 BSXQ3C1V8 233 aa9.81□□□□□ -0.84
VPS29-201ENST00000360579 IZUMO2Q6UXV1 221 aa9.81□□□□□ -0.84
VPS29-201ENST00000360579 C6orf223Q8N319 242 aa9.81□□□□□ -0.84
VPS29-201ENST00000360579 CLUHP3Q96NS8 147 aa9.81□□□□□ -0.84
VPS29-201ENST00000360579 GOLT1BQ9Y3E0 138 aa9.81□□□□□ -0.84
VPS29-201ENST00000360579 BUB3O43684 328 aa9.8□□□□□ -0.84
VPS29-201ENST00000360579 IGKV1-5P01602 117 aa9.8□□□□□ -0.84
VPS29-201ENST00000360579 HBE1P02100 147 aa9.8□□□□□ -0.84
VPS29-201ENST00000360579 P0C879 139 aa9.8□□□□□ -0.84
VPS29-201ENST00000360579 OR10J1P30954 320 aa9.8□□□□□ -0.84
VPS29-201ENST00000360579 NUP62P37198 522 aaPredicted RBP9.8□□□□□ -0.84
VPS29-201ENST00000360579 HTR2BP41595 481 aa9.8□□□□□ -0.84
VPS29-201ENST00000360579 DAD1P61803 113 aa9.8□□□□□ -0.84
VPS29-201ENST00000360579 DHODHQ02127 395 aa9.8□□□□□ -0.84
VPS29-201ENST00000360579 FOXI2Q6ZQN5 318 aa9.8□□□□□ -0.84
VPS29-201ENST00000360579 ZNF486Q96H40 463 aaPredicted RBP9.8□□□□□ -0.84
VPS29-201ENST00000360579 YTHDF1Q9BYJ9 559 aaKnown RBP9.8□□□□□ -0.84
VPS29-201ENST00000360579 SCRT2Q9NQ03 307 aa9.8□□□□□ -0.84
VPS29-201ENST00000360579 PFDN2Q9UHV9 154 aa9.8□□□□□ -0.84
VPS29-201ENST00000360579 NBDYA0A0U1RRE5 68 aa9.79□□□□□ -0.84
VPS29-201ENST00000360579 LOC102723971A0A1B0GUV8 181 aa9.79□□□□□ -0.84
VPS29-201ENST00000360579 IGKV3-20P01619 116 aa9.79□□□□□ -0.84
VPS29-201ENST00000360579 IL4P05112 153 aa9.79□□□□□ -0.84
VPS29-201ENST00000360579 ID1P41134 155 aa9.79□□□□□ -0.84
VPS29-201ENST00000360579 ALDH3B2P48448 385 aa9.79□□□□□ -0.84
VPS29-201ENST00000360579 RND3P61587 244 aa9.79□□□□□ -0.84
VPS29-201ENST00000360579 USF2Q15853 346 aaPredicted RBP9.79□□□□□ -0.84
VPS29-201ENST00000360579 SPATA31B1PQ5VZV4 182 aa9.79□□□□□ -0.84
VPS29-201ENST00000360579 PRSS54Q6PEW0 395 aa9.79□□□□□ -0.84
VPS29-201ENST00000360579 GSG1LQ6UXU4 331 aa9.79□□□□□ -0.84
VPS29-201ENST00000360579 SAMD12Q8N8I0 201 aa9.79□□□□□ -0.84
VPS29-201ENST00000360579 RRNAD1Q96FB5 475 aaKnown RBP9.79□□□□□ -0.84
VPS29-201ENST00000360579 C7orf50Q9BRJ6 194 aaKnown RBP9.79□□□□□ -0.84
VPS29-201ENST00000360579 SAV1Q9H4B6 383 aaPredicted RBP9.79□□□□□ -0.84
VPS29-201ENST00000360579 RAB26Q9ULW5 256 aa9.79□□□□□ -0.84
VPS29-201ENST00000360579 YTHDF2Q9Y5A9 579 aaKnown RBP9.79□□□□□ -0.84
VPS29-201ENST00000360579 PGAM2P15259 253 aa9.78□□□□□ -0.84
VPS29-201ENST00000360579 RCVRNP35243 200 aa9.78□□□□□ -0.84
VPS29-201ENST00000360579 RND2P52198 227 aa9.78□□□□□ -0.84
VPS29-201ENST00000360579 FXYD7P58549 80 aa9.78□□□□□ -0.84
VPS29-201ENST00000360579 SPCS3P61009 180 aa9.78□□□□□ -0.84
VPS29-201ENST00000360579 RRN3P1Q2M238 152 aa9.78□□□□□ -0.84
VPS29-201ENST00000360579 GDF5OSQ5U4N7 250 aa9.78□□□□□ -0.84
VPS29-201ENST00000360579 ETFRF1Q6IPR1 90 aa9.78□□□□□ -0.84
VPS29-201ENST00000360579 ZNF709Q8N972 641 aa9.78□□□□□ -0.84
VPS29-201ENST00000360579 RNASEH2CQ8TDP1 164 aaKnown RBP9.78□□□□□ -0.84
VPS29-201ENST00000360579 GPX8Q8TED1 209 aa9.78□□□□□ -0.84
VPS29-201ENST00000360579 SCPEP1Q9HB40 452 aa9.78□□□□□ -0.84
VPS29-201ENST00000360579 RD3LP0DJH9 198 aa9.77□□□□□ -0.85
VPS29-201ENST00000360579 PSMB3P49720 205 aa9.77□□□□□ -0.85
VPS29-201ENST00000360579 TRIM16LQ309B1 348 aa9.77□□□□□ -0.85
VPS29-201ENST00000360579 OR4B1Q8NGF8 309 aa9.77□□□□□ -0.85
VPS29-201ENST00000360579 OR52E5Q8NH55 327 aa9.77□□□□□ -0.85
VPS29-201ENST00000360579 ZNRF2Q8NHG8 242 aa9.77□□□□□ -0.85
VPS29-201ENST00000360579 COQ8AQ8NI60 647 aa9.77□□□□□ -0.85
VPS29-201ENST00000360579 RNASE11Q8TAA1 199 aaKnown RBP9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms