RNA–Protein interactions for RNA: ENST00000342988.7

SMAD4-201, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,769 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-201ENST00000342988 GAGE12JA6NER3 117 aa14.89□□□□□ -0.03
SMAD4-201ENST00000342988 IGHV3-48P01763 117 aa14.89□□□□□ -0.03
SMAD4-201ENST00000342988 GAGE1Q13065 139 aa14.89□□□□□ -0.03
SMAD4-201ENST00000342988 GAGE4Q13068 117 aa14.89□□□□□ -0.03
SMAD4-201ENST00000342988 GAGE5Q13069 117 aa14.89□□□□□ -0.03
SMAD4-201ENST00000342988 GAGE6Q13070 117 aa14.89□□□□□ -0.03
SMAD4-201ENST00000342988 A0A1W2PRX2 142 aa14.89□□□□□ -0.03
SMAD4-201ENST00000342988 SVIPQ8NHG7 77 aa14.89□□□□□ -0.03
SMAD4-201ENST00000342988 USF3Q68DE3 2245 aa14.89□□□□□ -0.03
SMAD4-201ENST00000342988 ADMP35318 185 aa14.89□□□□□ -0.03
SMAD4-201ENST00000342988 C16orf47Q6ZP98 133 aaPredicted RBP14.89□□□□□ -0.03
SMAD4-201ENST00000342988 NAV3Q8IVL0 2385 aa14.89□□□□□ -0.03
SMAD4-201ENST00000342988 CT62P0C5K7 136 aa14.89□□□□□ -0.03
SMAD4-201ENST00000342988 ZPLD1Q8TCW7 415 aa14.89□□□□□ -0.03
SMAD4-201ENST00000342988 SPINK2P20155 84 aa14.88□□□□□ -0.03
SMAD4-201ENST00000342988 PRSS22Q9GZN4 317 aa14.88□□□□□ -0.03
SMAD4-201ENST00000342988 IGHV3-23P01764 117 aa14.88□□□□□ -0.03
SMAD4-201ENST00000342988 KLF14Q8TD94 323 aaPredicted RBP14.88□□□□□ -0.03
SMAD4-201ENST00000342988 GAGE12BA1L429 117 aa14.88□□□□□ -0.03
SMAD4-201ENST00000342988 RPUSD1Q9UJJ7 312 aaKnown RBP14.88□□□□□ -0.03
SMAD4-201ENST00000342988 J3QW42 95 aa14.88□□□□□ -0.03
SMAD4-201ENST00000342988 ZNF561-AS1K7EIQ3 104 aa14.88□□□□□ -0.03
SMAD4-201ENST00000342988 NBASA2RRP1 2371 aa14.88□□□□□ -0.03
SMAD4-201ENST00000342988 TPTE2P1Q5T6R2 138 aa14.88□□□□□ -0.03
SMAD4-201ENST00000342988 GFI1BQ5VTD9 330 aa14.88□□□□□ -0.03
SMAD4-201ENST00000342988 TMEM170AQ8WVE7 144 aa14.88□□□□□ -0.03
SMAD4-201ENST00000342988 TIMM21Q9BVV7 248 aa14.88□□□□□ -0.03
SMAD4-201ENST00000342988 IL18BPO95998 194 aa14.87□□□□□ -0.03
SMAD4-201ENST00000342988 VCYO14598 125 aa14.87□□□□□ -0.03
SMAD4-201ENST00000342988 LOC101059915A0A1B0GWI6 518 aaPredicted RBP14.87□□□□□ -0.03
SMAD4-201ENST00000342988 CCL20P78556 96 aa14.87□□□□□ -0.03
SMAD4-201ENST00000342988 KLF17Q5JT82 389 aaPredicted RBP14.87□□□□□ -0.03
SMAD4-201ENST00000342988 PAPPAQ13219 1627 aa14.87□□□□□ -0.03
SMAD4-201ENST00000342988 CD300EQ496F6 205 aaPredicted RBP14.87□□□□□ -0.03
SMAD4-201ENST00000342988 LINC01555Q8NAE3 123 aa14.87□□□□□ -0.03
SMAD4-201ENST00000342988 MUC21A0A0G2JKD1 596 aa14.86□□□□□ -0.03
SMAD4-201ENST00000342988 MUC21A0A140T8X8 626 aa14.86□□□□□ -0.03
SMAD4-201ENST00000342988 MUC21Q5SSG8 566 aa14.86□□□□□ -0.03
SMAD4-201ENST00000342988 IGHV1OR15-9A0A0B4J2B8 117 aa14.86□□□□□ -0.03
SMAD4-201ENST00000342988 BCL6BQ8N143 479 aaPredicted RBP14.86□□□□□ -0.03
SMAD4-201ENST00000342988 ZNF721Q8TF20 911 aa14.86□□□□□ -0.03
SMAD4-201ENST00000342988 IGHV3-35A0A0C4DH35 117 aa14.86□□□□□ -0.03
SMAD4-201ENST00000342988 PLA2G10O15496 165 aa14.86□□□□□ -0.03
SMAD4-201ENST00000342988 CD300CQ08708 224 aa14.86□□□□□ -0.03
SMAD4-201ENST00000342988 SLC25A48Q6ZT89 311 aaKnown RBP14.86□□□□□ -0.03
SMAD4-201ENST00000342988 C1orf122Q6ZSJ8 110 aa14.86□□□□□ -0.03
SMAD4-201ENST00000342988 IGHV3OR16-13A0A075B7E8 117 aa14.86□□□□□ -0.03
SMAD4-201ENST00000342988 IGHV3-74A0A0B4J1X5 117 aa14.86□□□□□ -0.03
SMAD4-201ENST00000342988 NGFRP08138 427 aa14.86□□□□□ -0.03
SMAD4-201ENST00000342988 RCHY1Q96PM5 261 aa14.86□□□□□ -0.03
SMAD4-201ENST00000342988 TNFRSF12AQ9NP84 129 aa14.86□□□□□ -0.03
SMAD4-201ENST00000342988 OSTCQ9NRP0 149 aa14.86□□□□□ -0.03
SMAD4-201ENST00000342988 CARHSP1Q9Y2V2 147 aaKnown RBP14.86□□□□□ -0.03
SMAD4-201ENST00000342988 PTPRQQ9UMZ3 2332 aa14.86□□□□□ -0.03
SMAD4-201ENST00000342988 IGHG4P01861 327 aa14.86□□□□□ -0.03
SMAD4-201ENST00000342988 OR9G9P0C7N8 305 aa14.85□□□□□ -0.03
SMAD4-201ENST00000342988 TMEM187Q14656 261 aa14.85□□□□□ -0.03
SMAD4-201ENST00000342988 RNASE7Q9H1E1 156 aaKnown RBP14.85□□□□□ -0.03
SMAD4-201ENST00000342988 RPL34P49207 117 aaKnown RBP14.85□□□□□ -0.03
SMAD4-201ENST00000342988 A0A1W2PPI3 338 aa14.85□□□□□ -0.03
SMAD4-201ENST00000342988 PLXNA3P51805 1871 aa14.85□□□□□ -0.03
SMAD4-201ENST00000342988 FAM90A1Q86YD7 464 aa14.85□□□□□ -0.03
SMAD4-201ENST00000342988 GLMPQ8WWB7 406 aa14.85□□□□□ -0.03
SMAD4-201ENST00000342988 IGFBP2P18065 325 aa14.85□□□□□ -0.03
SMAD4-201ENST00000342988 CFHR5Q9BXR6 569 aa14.85□□□□□ -0.03
SMAD4-201ENST00000342988 C9JAW5 83 aa14.84□□□□□ -0.03
SMAD4-201ENST00000342988 BAALCQ8WXS3 180 aa14.84□□□□□ -0.03
SMAD4-201ENST00000342988 LEAP2Q969E1 77 aa14.84□□□□□ -0.03
SMAD4-201ENST00000342988 Q96M66 194 aa14.84□□□□□ -0.03
SMAD4-201ENST00000342988 FCN3O75636 299 aa14.84□□□□□ -0.03
SMAD4-201ENST00000342988 C9orf50Q5SZB4 431 aa14.84□□□□□ -0.03
SMAD4-201ENST00000342988 C1QL3Q5VWW1 255 aa14.84□□□□□ -0.03
SMAD4-201ENST00000342988 UPK3AO75631 287 aa14.84□□□□□ -0.03
SMAD4-201ENST00000342988 COX14Q96I36 57 aa14.84□□□□□ -0.03
SMAD4-201ENST00000342988 DUSP15Q9H1R2 295 aaPredicted RBP14.84□□□□□ -0.03
SMAD4-201ENST00000342988 CD33P20138 364 aa14.84□□□□□ -0.03
SMAD4-201ENST00000342988 PRIMA1Q86XR5 153 aa14.84□□□□□ -0.03
SMAD4-201ENST00000342988 SPATA25Q9BR10 227 aa14.84□□□□□ -0.03
SMAD4-201ENST00000342988 RMI2Q96E14 147 aa14.83□□□□□ -0.04
SMAD4-201ENST00000342988 MRPS18AQ9NVS2 196 aaKnown RBP14.83□□□□□ -0.04
SMAD4-201ENST00000342988 KLHDC2Q9Y2U9 406 aa14.83□□□□□ -0.04
SMAD4-201ENST00000342988 WFDC6Q9BQY6 131 aa14.83□□□□□ -0.04
SMAD4-201ENST00000342988 RBM38Q9H0Z9 239 aaKnown RBP14.83□□□□□ -0.04
SMAD4-201ENST00000342988 SIGLEC1Q9BZZ2 1709 aa14.83□□□□□ -0.04
SMAD4-201ENST00000342988 NBR2O15453 112 aa14.83□□□□□ -0.04
SMAD4-201ENST00000342988 SLC25A28Q96A46 364 aa14.83□□□□□ -0.04
SMAD4-201ENST00000342988 OTOGLQ3ZCN5 2332 aa14.83□□□□□ -0.04
SMAD4-201ENST00000342988 EFEMP2O95967 443 aa14.83□□□□□ -0.04
SMAD4-201ENST00000342988 WBP1LQ9NX94 342 aa14.83□□□□□ -0.04
SMAD4-201ENST00000342988 TNRC6BQ9UPQ9 1833 aaKnown RBP14.82□□□□□ -0.04
SMAD4-201ENST00000342988 NPDC1Q9NQX5 325 aaPredicted RBP14.82□□□□□ -0.04
SMAD4-201ENST00000342988 RNF125Q96EQ8 232 aa14.82□□□□□ -0.04
SMAD4-201ENST00000342988 COLCA1Q6ZS62 124 aa14.82□□□□□ -0.04
SMAD4-201ENST00000342988 ZNF826PQ6ZT77 177 aa14.82□□□□□ -0.04
SMAD4-201ENST00000342988 TMEM144Q7Z5S9 345 aa14.82□□□□□ -0.04
SMAD4-201ENST00000342988 TCRBV5S1A1TA0A578 114 aa14.82□□□□□ -0.04
SMAD4-201ENST00000342988 MSGN1A6NI15 193 aa14.82□□□□□ -0.04
SMAD4-201ENST00000342988 ZIC3O60481 467 aa14.82□□□□□ -0.04
SMAD4-201ENST00000342988 IFITM3Q01628 133 aa14.82□□□□□ -0.04
SMAD4-201ENST00000342988 FBXL15Q9H469 300 aa14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms