RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 SEPSECSQ9HD40 501 aaKnown RBP3.25□□□□□ -1.89
MCF2-201ENST00000338585 TREM1Q9NP99 234 aa3.25□□□□□ -1.89
MCF2-201ENST00000338585 DOK5Q9P104 306 aa3.25□□□□□ -1.89
MCF2-201ENST00000338585 TRAV1-1A0A0B4J248 108 aa3.25□□□□□ -1.89
MCF2-201ENST00000338585 CTXND1A0A1B0GTU2 59 aa3.25□□□□□ -1.89
MCF2-201ENST00000338585 CORTO00230 105 aa3.25□□□□□ -1.89
MCF2-201ENST00000338585 OR2J3O76001 311 aa3.25□□□□□ -1.89
MCF2-201ENST00000338585 CDC34P49427 236 aaPredicted RBP3.25□□□□□ -1.89
MCF2-201ENST00000338585 GUK1Q16774 197 aa3.25□□□□□ -1.89
MCF2-201ENST00000338585 MORN5Q5VZ52 161 aa3.25□□□□□ -1.89
MCF2-201ENST00000338585 ETFRF1Q6IPR1 90 aa3.25□□□□□ -1.89
MCF2-201ENST00000338585 THAP8Q8NA92 274 aa3.25□□□□□ -1.89
MCF2-201ENST00000338585 TMEM116Q8NCL8 245 aa3.25□□□□□ -1.89
MCF2-201ENST00000338585 GATAD1Q8WUU5 269 aa3.25□□□□□ -1.89
MCF2-201ENST00000338585 NOL4LQ96MY1 436 aaPredicted RBP3.25□□□□□ -1.89
MCF2-201ENST00000338585 DUX5Q96PT3 197 aa3.25□□□□□ -1.89
MCF2-201ENST00000338585 ACTR3CQ9C0K3 210 aaPredicted RBP3.25□□□□□ -1.89
MCF2-201ENST00000338585 EIF5A2Q9GZV4 153 aaKnown RBP3.25□□□□□ -1.89
MCF2-201ENST00000338585 GNG13Q9P2W3 67 aa3.25□□□□□ -1.89
MCF2-201ENST00000338585 TCRBV4S1A1TA0A5B7 111 aa3.24□□□□□ -1.89
MCF2-201ENST00000338585 NUDT19A8MXV4 375 aa3.24□□□□□ -1.89
MCF2-201ENST00000338585 SEC14L6B5MCN3 397 aa3.24□□□□□ -1.89
MCF2-201ENST00000338585 F8W735 103 aaPredicted RBP3.24□□□□□ -1.89
MCF2-201ENST00000338585 CYB5BO43169 146 aa3.24□□□□□ -1.89
MCF2-201ENST00000338585 MBP02144 154 aa3.24□□□□□ -1.89
MCF2-201ENST00000338585 CD5P06127 495 aa3.24□□□□□ -1.89
MCF2-201ENST00000338585 IGLC1P0CG04 106 aa3.24□□□□□ -1.89
MCF2-201ENST00000338585 TMEM95Q3KNT9 176 aa3.24□□□□□ -1.89
MCF2-201ENST00000338585 TIGITQ495A1 244 aa3.24□□□□□ -1.89
MCF2-201ENST00000338585 C19orf54Q5BKX5 351 aa3.24□□□□□ -1.89
MCF2-201ENST00000338585 UQCC3Q6UW78 93 aa3.24□□□□□ -1.89
MCF2-201ENST00000338585 SPNS3Q6ZMD2 512 aa3.24□□□□□ -1.89
MCF2-201ENST00000338585 C9orf139Q6ZV77 190 aa3.24□□□□□ -1.89
MCF2-201ENST00000338585 MIR17HGQ75NE6 70 aa3.24□□□□□ -1.89
MCF2-201ENST00000338585 IQCF2Q8IXL9 164 aa3.24□□□□□ -1.89
MCF2-201ENST00000338585 FAM110DQ8TAY7 271 aaPredicted RBP3.24□□□□□ -1.89
MCF2-201ENST00000338585 TMEM37Q8WXS4 190 aa3.24□□□□□ -1.89
MCF2-201ENST00000338585 MS4A10Q96PG2 267 aa3.24□□□□□ -1.89
MCF2-201ENST00000338585 UHRF2Q96PU4 802 aa3.24□□□□□ -1.89
MCF2-201ENST00000338585 SMR3AQ99954 134 aa3.24□□□□□ -1.89
MCF2-201ENST00000338585 KCNIP2Q9NS61 270 aa3.24□□□□□ -1.89
MCF2-201ENST00000338585 ZNF355PQ9NSJ1 428 aa3.24□□□□□ -1.89
MCF2-201ENST00000338585 AKAP9Q99996 3911 aa3.24□□□□□ -1.89
MCF2-201ENST00000338585 TRAV41A0A0B4J266 112 aa3.24□□□□□ -1.89
MCF2-201ENST00000338585 A0A1W2PPV4 95 aa3.24□□□□□ -1.89
MCF2-201ENST00000338585 TMEM218A2RU14 115 aa3.24□□□□□ -1.89
MCF2-201ENST00000338585 PSMB11A5LHX3 300 aa3.24□□□□□ -1.89
MCF2-201ENST00000338585 RBFOX3A6NFN3 312 aa3.24□□□□□ -1.89
MCF2-201ENST00000338585 HOXA3O43365 443 aaPredicted RBP3.24□□□□□ -1.89
MCF2-201ENST00000338585 SCO1O75880 301 aa3.24□□□□□ -1.89
MCF2-201ENST00000338585 IGKV1-17P01599 117 aa3.24□□□□□ -1.89
MCF2-201ENST00000338585 HBE1P02100 147 aa3.24□□□□□ -1.89
MCF2-201ENST00000338585 SFTA3P0C7M3 94 aa3.24□□□□□ -1.89
MCF2-201ENST00000338585 ARL14EPLP0DKL9 152 aa3.24□□□□□ -1.89
MCF2-201ENST00000338585 ZP3P21754 424 aa3.24□□□□□ -1.89
MCF2-201ENST00000338585 PPT1P50897 306 aa3.24□□□□□ -1.89
MCF2-201ENST00000338585 BPIFB3P59826 476 aa3.24□□□□□ -1.89
MCF2-201ENST00000338585 ICAM4Q14773 271 aa3.24□□□□□ -1.89
MCF2-201ENST00000338585 FAM78BQ5VT40 261 aa3.24□□□□□ -1.89
MCF2-201ENST00000338585 PATE2Q6UY27 113 aa3.24□□□□□ -1.89
MCF2-201ENST00000338585 Q6YL49 198 aa3.24□□□□□ -1.89
MCF2-201ENST00000338585 SLC35E3Q7Z769 313 aa3.24□□□□□ -1.89
MCF2-201ENST00000338585 COMMD1Q8N668 190 aa3.24□□□□□ -1.89
MCF2-201ENST00000338585 OR4X1Q8NH49 305 aa3.24□□□□□ -1.89
MCF2-201ENST00000338585 RXFP4Q8TDU9 374 aa3.24□□□□□ -1.89
MCF2-201ENST00000338585 KRTAP4-9Q9BYQ8 210 aa3.24□□□□□ -1.89
MCF2-201ENST00000338585 YAE1D1Q9NRH1 226 aa3.24□□□□□ -1.89
MCF2-201ENST00000338585 FBXL7Q9UJT9 491 aa3.24□□□□□ -1.89
MCF2-201ENST00000338585 PITPNC1Q9UKF7 332 aa3.24□□□□□ -1.89
MCF2-201ENST00000338585 MXRA5Q9NR99 2828 aa3.23□□□□□ -1.89
MCF2-201ENST00000338585 TRAV5A0A0B4J249 113 aa3.23□□□□□ -1.89
MCF2-201ENST00000338585 LOC102723971A0A1B0GUV8 181 aa3.23□□□□□ -1.89
MCF2-201ENST00000338585 BTBD17A6NE02 478 aa3.23□□□□□ -1.89
MCF2-201ENST00000338585 KRBOX1C9JBD0 128 aa3.23□□□□□ -1.89
MCF2-201ENST00000338585 CLN5O75503 358 aa3.23□□□□□ -1.89
MCF2-201ENST00000338585 IGHG2P01859 326 aa3.23□□□□□ -1.89
MCF2-201ENST00000338585 APOC3P02656 99 aa3.23□□□□□ -1.89
MCF2-201ENST00000338585 OR5G3P0C626 314 aa3.23□□□□□ -1.89
MCF2-201ENST00000338585 PSG1P11464 419 aa3.23□□□□□ -1.89
MCF2-201ENST00000338585 RHOGP84095 191 aa3.23□□□□□ -1.89
MCF2-201ENST00000338585 C15orf32Q32M92 178 aa3.23□□□□□ -1.89
MCF2-201ENST00000338585 AKIRIN2Q53H80 203 aa3.23□□□□□ -1.89
MCF2-201ENST00000338585 SIGLECL1Q8N7X8 197 aa3.23□□□□□ -1.89
MCF2-201ENST00000338585 OR1L6Q8NGR2 347 aa3.23□□□□□ -1.89
MCF2-201ENST00000338585 TRGV9Q99603 122 aa3.23□□□□□ -1.89
MCF2-201ENST00000338585 C21orf62Q9NYP8 219 aa3.23□□□□□ -1.89
MCF2-201ENST00000338585 TRBV9A0A0B4J1U6 114 aa3.23□□□□□ -1.89
MCF2-201ENST00000338585 IGHV3-35A0A0C4DH35 117 aa3.23□□□□□ -1.89
MCF2-201ENST00000338585 OR2T8A6NH00 312 aa3.23□□□□□ -1.89
MCF2-201ENST00000338585 F8W036 122 aa3.23□□□□□ -1.89
MCF2-201ENST00000338585 M0QZK8 103 aa3.23□□□□□ -1.89
MCF2-201ENST00000338585 CD5LO43866 347 aa3.23□□□□□ -1.89
MCF2-201ENST00000338585 GNG7O60262 68 aa3.23□□□□□ -1.89
MCF2-201ENST00000338585 COX7A2P2O60397 106 aa3.23□□□□□ -1.89
MCF2-201ENST00000338585 IGF1P05019 195 aa3.23□□□□□ -1.89
MCF2-201ENST00000338585 SNRPCP09234 159 aaKnown RBP3.23□□□□□ -1.89
MCF2-201ENST00000338585 STAG3L2P0CL84 134 aa3.23□□□□□ -1.89
MCF2-201ENST00000338585 STAG3L3P0CL85 134 aa3.23□□□□□ -1.89
MCF2-201ENST00000338585 BCL2P10415 239 aa3.23□□□□□ -1.89
MCF2-201ENST00000338585 ORM2P19652 201 aa3.23□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms