RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 IFITM3Q01628 133 aa10.56□□□□□ -0.72
LIMS1-201ENST00000332345 IAH1Q2TAA2 248 aaPredicted RBP10.56□□□□□ -0.72
LIMS1-201ENST00000332345 TMEM61Q8N0U2 210 aa10.56□□□□□ -0.72
LIMS1-201ENST00000332345 C12orf45Q8N5I9 185 aaPredicted RBP10.56□□□□□ -0.72
LIMS1-201ENST00000332345 OR4D5Q8NGN0 318 aa10.56□□□□□ -0.72
LIMS1-201ENST00000332345 Q8WTZ3 238 aa10.56□□□□□ -0.72
LIMS1-201ENST00000332345 NPIPB3Q92617 1050 aa10.56□□□□□ -0.72
LIMS1-201ENST00000332345 WDR89Q96FK6 387 aaPredicted RBP10.56□□□□□ -0.72
LIMS1-201ENST00000332345 GSKIPQ9P0R6 139 aa10.56□□□□□ -0.72
LIMS1-201ENST00000332345 PAIP2BQ9ULR5 123 aaKnown RBP10.56□□□□□ -0.72
LIMS1-201ENST00000332345 IGKV1-17P01599 117 aa10.55□□□□□ -0.72
LIMS1-201ENST00000332345 IL5P05113 134 aa10.55□□□□□ -0.72
LIMS1-201ENST00000332345 OR10J1P30954 320 aa10.55□□□□□ -0.72
LIMS1-201ENST00000332345 CD81P60033 236 aa10.55□□□□□ -0.72
LIMS1-201ENST00000332345 YPEL3P61236 119 aaPredicted RBP10.55□□□□□ -0.72
LIMS1-201ENST00000332345 TIGITQ495A1 244 aa10.55□□□□□ -0.72
LIMS1-201ENST00000332345 SPANXN5Q5MJ07 72 aa10.55□□□□□ -0.72
LIMS1-201ENST00000332345 SLC16A13Q7RTY0 426 aa10.55□□□□□ -0.72
LIMS1-201ENST00000332345 ACY3Q96HD9 319 aa10.55□□□□□ -0.72
LIMS1-201ENST00000332345 NEURL2Q9BR09 285 aa10.55□□□□□ -0.72
LIMS1-201ENST00000332345 SEC22CQ9BRL7 303 aa10.55□□□□□ -0.72
LIMS1-201ENST00000332345 RHPN1-AS1Q9BWJ2 59 aa10.55□□□□□ -0.72
LIMS1-201ENST00000332345 TUBA4BQ9H853 241 aa10.55□□□□□ -0.72
LIMS1-201ENST00000332345 STRAPQ9Y3F4 350 aaKnown RBP10.55□□□□□ -0.72
LIMS1-201ENST00000332345 SELENOKQ9Y6D0 94 aa10.55□□□□□ -0.72
LIMS1-201ENST00000332345 A8MZ25 164 aa10.54□□□□□ -0.72
LIMS1-201ENST00000332345 CHEK1O14757 476 aa10.54□□□□□ -0.72
LIMS1-201ENST00000332345 SCAF4O95104 1147 aaKnown RBP10.54□□□□□ -0.72
LIMS1-201ENST00000332345 CD5P06127 495 aa10.54□□□□□ -0.72
LIMS1-201ENST00000332345 IGLC1P0CG04 106 aa10.54□□□□□ -0.72
LIMS1-201ENST00000332345 IGHV4-30-4P0DP06 118 aa10.54□□□□□ -0.72
LIMS1-201ENST00000332345 NPPCP23582 126 aa10.54□□□□□ -0.72
LIMS1-201ENST00000332345 POLR2GP62487 172 aaKnown RBP eCLIP10.54□□□□□ -0.72
LIMS1-201ENST00000332345 ZBTB8BQ8NAP8 495 aaPredicted RBP10.54□□□□□ -0.72
LIMS1-201ENST00000332345 ZNF414Q96IQ9 312 aa10.54□□□□□ -0.72
LIMS1-201ENST00000332345 SLC35E1Q96K37 410 aa10.54□□□□□ -0.72
LIMS1-201ENST00000332345 GPN1Q9HCN4 374 aaPredicted RBP10.54□□□□□ -0.72
LIMS1-201ENST00000332345 PSENENQ9NZ42 101 aa10.54□□□□□ -0.72
LIMS1-201ENST00000332345 A0A1W2PS18 150 aa10.53□□□□□ -0.72
LIMS1-201ENST00000332345 C5orf51A6NDU8 294 aa10.53□□□□□ -0.72
LIMS1-201ENST00000332345 FAM25EA8MYX2 175 aa10.53□□□□□ -0.72
LIMS1-201ENST00000332345 TSPAN4O14817 238 aa10.53□□□□□ -0.72
LIMS1-201ENST00000332345 FRMD6-AS1P0C7T7 363 aa10.53□□□□□ -0.72
LIMS1-201ENST00000332345 RD3LP0DJH9 198 aa10.53□□□□□ -0.72
LIMS1-201ENST00000332345 GAMTQ14353 236 aa10.53□□□□□ -0.72
LIMS1-201ENST00000332345 NRARPQ7Z6K4 114 aa10.53□□□□□ -0.72
LIMS1-201ENST00000332345 NARS2Q96I59 477 aaKnown RBP10.53□□□□□ -0.72
LIMS1-201ENST00000332345 SMIM8Q96KF7 97 aa10.53□□□□□ -0.72
LIMS1-201ENST00000332345 METTL26Q96S19 204 aa10.53□□□□□ -0.72
LIMS1-201ENST00000332345 RAB40CQ96S21 281 aa10.53□□□□□ -0.72
LIMS1-201ENST00000332345 SPAG8Q99932 426 aaPredicted RBP10.53□□□□□ -0.72
LIMS1-201ENST00000332345 TMEM231Q9H6L2 316 aa10.53□□□□□ -0.72
LIMS1-201ENST00000332345 ZFAND3Q9H8U3 227 aa10.53□□□□□ -0.72
LIMS1-201ENST00000332345 IGHV3-49A0A0A0MS15 119 aa10.52□□□□□ -0.73
LIMS1-201ENST00000332345 SSSCA1O60232 199 aa10.52□□□□□ -0.73
LIMS1-201ENST00000332345 SCGB1D2O95969 90 aa10.52□□□□□ -0.73
LIMS1-201ENST00000332345 CD7P09564 240 aa10.52□□□□□ -0.73
LIMS1-201ENST00000332345 TAS2R30P59541 319 aa10.52□□□□□ -0.73
LIMS1-201ENST00000332345 PAFAH1B2P68402 229 aa10.52□□□□□ -0.73
LIMS1-201ENST00000332345 RNF2Q99496 336 aa10.52□□□□□ -0.73
LIMS1-201ENST00000332345 C19orf73Q9NVV2 129 aa10.52□□□□□ -0.73
LIMS1-201ENST00000332345 ZFP92A6NM28 416 aa10.51□□□□□ -0.73
LIMS1-201ENST00000332345 OR11H12B2RN74 326 aa10.51□□□□□ -0.73
LIMS1-201ENST00000332345 INMT-MINDY4F8WBC2 141 aa10.51□□□□□ -0.73
LIMS1-201ENST00000332345 CCSO14618 274 aa10.51□□□□□ -0.73
LIMS1-201ENST00000332345 PRAF2O60831 178 aa10.51□□□□□ -0.73
LIMS1-201ENST00000332345 FABP1P07148 127 aa10.51□□□□□ -0.73
LIMS1-201ENST00000332345 GSG1LQ6UXU4 331 aa10.51□□□□□ -0.73
LIMS1-201ENST00000332345 C2orf50Q96LR7 162 aa10.51□□□□□ -0.73
LIMS1-201ENST00000332345 ASCL2Q99929 193 aa10.51□□□□□ -0.73
LIMS1-201ENST00000332345 VSIRQ9H7M9 311 aa10.51□□□□□ -0.73
LIMS1-201ENST00000332345 IGHV3OR16-13A0A075B7E8 117 aa10.5□□□□□ -0.73
LIMS1-201ENST00000332345 IGHV3-74A0A0B4J1X5 117 aa10.5□□□□□ -0.73
LIMS1-201ENST00000332345 OR4C46A6NHA9 309 aa10.5□□□□□ -0.73
LIMS1-201ENST00000332345 SNRPGP15A8MWD9 76 aa10.5□□□□□ -0.73
LIMS1-201ENST00000332345 H3BP45 60 aa10.5□□□□□ -0.73
LIMS1-201ENST00000332345 TOMM40O96008 361 aa10.5□□□□□ -0.73
LIMS1-201ENST00000332345 MBPP02686 304 aaPredicted RBP10.5□□□□□ -0.73
LIMS1-201ENST00000332345 CRYBB3P26998 211 aa10.5□□□□□ -0.73
LIMS1-201ENST00000332345 CMC4P56277 68 aaPredicted RBP10.5□□□□□ -0.73
LIMS1-201ENST00000332345 SBSPONQ8IVN8 264 aa10.5□□□□□ -0.73
LIMS1-201ENST00000332345 ST8SIA2Q92186 375 aa10.5□□□□□ -0.73
LIMS1-201ENST00000332345 GRAMD2BQ96HH9 432 aa10.5□□□□□ -0.73
LIMS1-201ENST00000332345 MARVELD1Q9BSK0 173 aa10.5□□□□□ -0.73
LIMS1-201ENST00000332345 DNAH9Q9NYC9 4486 aa10.49□□□□□ -0.73
LIMS1-201ENST00000332345 L7N2F9 121 aa10.49□□□□□ -0.73
LIMS1-201ENST00000332345 TSC22D2O75157 780 aa10.49□□□□□ -0.73
LIMS1-201ENST00000332345 APOHP02749 345 aaPredicted RBP10.49□□□□□ -0.73
LIMS1-201ENST00000332345 IL4P05112 153 aa10.49□□□□□ -0.73
LIMS1-201ENST00000332345 PSG1P11464 419 aa10.49□□□□□ -0.73
LIMS1-201ENST00000332345 PAX9P55771 341 aa10.49□□□□□ -0.73
LIMS1-201ENST00000332345 RPL11P62913 178 aaKnown RBP10.49□□□□□ -0.73
LIMS1-201ENST00000332345 VAMP2P63027 116 aa10.49□□□□□ -0.73
LIMS1-201ENST00000332345 FAM90A2PQ658T7 463 aa10.49□□□□□ -0.73
LIMS1-201ENST00000332345 TCF24Q7RTU0 167 aa10.49□□□□□ -0.73
LIMS1-201ENST00000332345 DEFB125Q8N687 156 aa10.49□□□□□ -0.73
LIMS1-201ENST00000332345 OR51G1Q8NGK1 321 aa10.49□□□□□ -0.73
LIMS1-201ENST00000332345 TRGV9Q99603 122 aa10.49□□□□□ -0.73
LIMS1-201ENST00000332345 ZMAT4Q9H898 229 aa10.49□□□□□ -0.73
LIMS1-201ENST00000332345 PFDN2Q9UHV9 154 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms