RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 A0A1W2PQL4 384 aaPredicted RBP1.67□□□□□ -2.14
HMGB1-201ENST00000326004 IZUMO1RA6ND01 250 aa1.67□□□□□ -2.14
HMGB1-201ENST00000326004 TSTD3H0UI37 97 aa1.67□□□□□ -2.14
HMGB1-201ENST00000326004 K7EP13 123 aa1.67□□□□□ -2.14
HMGB1-201ENST00000326004 M0R143 59 aa1.67□□□□□ -2.14
HMGB1-201ENST00000326004 AIPO00170 330 aa1.67□□□□□ -2.14
HMGB1-201ENST00000326004 OR2J2O76002 312 aa1.67□□□□□ -2.14
HMGB1-201ENST00000326004 MPC2O95563 127 aa1.67□□□□□ -2.14
HMGB1-201ENST00000326004 CFDP00746 253 aaPredicted RBP1.67□□□□□ -2.14
HMGB1-201ENST00000326004 IGHV1-46P01743 117 aa1.67□□□□□ -2.14
HMGB1-201ENST00000326004 HBZP02008 142 aa1.67□□□□□ -2.14
HMGB1-201ENST00000326004 PPBPP02775 128 aa1.67□□□□□ -2.14
HMGB1-201ENST00000326004 TCRBP04435 133 aa1.67□□□□□ -2.14
HMGB1-201ENST00000326004 HTR1AP08908 422 aa1.67□□□□□ -2.14
HMGB1-201ENST00000326004 HIST1H1EP10412 219 aaKnown RBP1.67□□□□□ -2.14
HMGB1-201ENST00000326004 CTSEP14091 401 aa1.67□□□□□ -2.14
HMGB1-201ENST00000326004 MYL12AP19105 171 aa1.67□□□□□ -2.14
HMGB1-201ENST00000326004 CD52P31358 61 aa1.67□□□□□ -2.14
HMGB1-201ENST00000326004 INPP1P49441 399 aa1.67□□□□□ -2.14
HMGB1-201ENST00000326004 NUDT2P50583 147 aa1.67□□□□□ -2.14
HMGB1-201ENST00000326004 TCL1AP56279 114 aa1.67□□□□□ -2.14
HMGB1-201ENST00000326004 DNAJB13P59910 316 aa1.67□□□□□ -2.14
HMGB1-201ENST00000326004 DAD1P61803 113 aa1.67□□□□□ -2.14
HMGB1-201ENST00000326004 CDK6Q00534 326 aa1.67□□□□□ -2.14
HMGB1-201ENST00000326004 SRSF6Q13247 344 aaKnown RBP1.67□□□□□ -2.14
HMGB1-201ENST00000326004 IHHQ14623 411 aa1.67□□□□□ -2.14
HMGB1-201ENST00000326004 TMED2Q15363 201 aa1.67□□□□□ -2.14
HMGB1-201ENST00000326004 RSU1Q15404 277 aa1.67□□□□□ -2.14
HMGB1-201ENST00000326004 TMEM176BQ3YBM2 270 aaPredicted RBP1.67□□□□□ -2.14
HMGB1-201ENST00000326004 TRMT12Q53H54 448 aaKnown RBP1.67□□□□□ -2.14
HMGB1-201ENST00000326004 C1orf195Q5TG92 126 aa1.67□□□□□ -2.14
HMGB1-201ENST00000326004 Q6ZRU5 148 aa1.67□□□□□ -2.14
HMGB1-201ENST00000326004 TCF23Q7RTU1 214 aa1.67□□□□□ -2.14
HMGB1-201ENST00000326004 ZNF720Q7Z2F6 126 aa1.67□□□□□ -2.14
HMGB1-201ENST00000326004 ANGPTL5Q86XS5 388 aa1.67□□□□□ -2.14
HMGB1-201ENST00000326004 DOLPP1Q86YN1 238 aa1.67□□□□□ -2.14
HMGB1-201ENST00000326004 ZBTB8OSQ8IWT0 167 aa1.67□□□□□ -2.14
HMGB1-201ENST00000326004 DEFB107AQ8IZN7 70 aa1.67□□□□□ -2.14
HMGB1-201ENST00000326004 EIF4E3Q8N5X7 224 aaKnown RBP1.67□□□□□ -2.14
HMGB1-201ENST00000326004 ZNF283Q8N7M2 679 aa1.67□□□□□ -2.14
HMGB1-201ENST00000326004 TMEM161BQ8NDZ6 487 aa1.67□□□□□ -2.14
HMGB1-201ENST00000326004 OR2D3Q8NGH3 330 aa1.67□□□□□ -2.14
HMGB1-201ENST00000326004 OR9I1Q8NGQ6 314 aa1.67□□□□□ -2.14
HMGB1-201ENST00000326004 OR13D1Q8NGV5 346 aa1.67□□□□□ -2.14
HMGB1-201ENST00000326004 OR8S1Q8NH09 359 aa1.67□□□□□ -2.14
HMGB1-201ENST00000326004 OR5J2Q8NH18 312 aa1.67□□□□□ -2.14
HMGB1-201ENST00000326004 OR2V1Q8NHB1 315 aa1.67□□□□□ -2.14
HMGB1-201ENST00000326004 GNPDA2Q8TDQ7 276 aa1.67□□□□□ -2.14
HMGB1-201ENST00000326004 ZNF431Q8TF32 576 aaPredicted RBP1.67□□□□□ -2.14
HMGB1-201ENST00000326004 ACOT12Q8WYK0 555 aa1.67□□□□□ -2.14
HMGB1-201ENST00000326004 MAL2Q969L2 176 aa1.67□□□□□ -2.14
HMGB1-201ENST00000326004 TMBIM1Q969X1 311 aa1.67□□□□□ -2.14
HMGB1-201ENST00000326004 MRPS24Q96EL2 167 aaKnown RBP1.67□□□□□ -2.14
HMGB1-201ENST00000326004 HYLS1Q96M11 299 aa1.67□□□□□ -2.14
HMGB1-201ENST00000326004 SMR3AQ99954 134 aa1.67□□□□□ -2.14
HMGB1-201ENST00000326004 DCSTAMPQ9H295 470 aa1.67□□□□□ -2.14
HMGB1-201ENST00000326004 OPTCQ9UBM4 332 aa1.67□□□□□ -2.14
HMGB1-201ENST00000326004 METTL1Q9UBP6 276 aaKnown RBP1.67□□□□□ -2.14
HMGB1-201ENST00000326004 SLC22A13Q9Y226 551 aa1.67□□□□□ -2.14
HMGB1-201ENST00000326004 TMEM56-RWDD3S4R434 201 aa1.67□□□□□ -2.14
HMGB1-201ENST00000326004 LAMA4Q16363 1823 aa1.67□□□□□ -2.14
HMGB1-201ENST00000326004 MYH13Q9UKX3 1938 aa1.67□□□□□ -2.14
HMGB1-201ENST00000326004 RYR3Q15413 4870 aa1.67□□□□□ -2.14
HMGB1-201ENST00000326004 PARP14Q460N5 1801 aa1.66□□□□□ -2.14
HMGB1-201ENST00000326004 GOLGA4Q13439 2230 aaKnown RBP1.66□□□□□ -2.14
HMGB1-201ENST00000326004 IGHV3-43A0A0B4J1X8 118 aa1.66□□□□□ -2.14
HMGB1-201ENST00000326004 IGKV2-24A0A0C4DH68 120 aa1.66□□□□□ -2.14
HMGB1-201ENST00000326004 TEX50A0A1B0GTY4 177 aa1.66□□□□□ -2.14
HMGB1-201ENST00000326004 A8MWP6 167 aa1.66□□□□□ -2.14
HMGB1-201ENST00000326004 D6RAR5 112 aa1.66□□□□□ -2.14
HMGB1-201ENST00000326004 COPEO14579 308 aa1.66□□□□□ -2.14
HMGB1-201ENST00000326004 TP53I11O14683 189 aa1.66□□□□□ -2.14
HMGB1-201ENST00000326004 CYB5BO43169 146 aa1.66□□□□□ -2.14
HMGB1-201ENST00000326004 BANF1O75531 89 aa1.66□□□□□ -2.14
HMGB1-201ENST00000326004 SERPINA1P01009 418 aa1.66□□□□□ -2.14
HMGB1-201ENST00000326004 NRASP01111 189 aa1.66□□□□□ -2.14
HMGB1-201ENST00000326004 HRASP01112 189 aa1.66□□□□□ -2.14
HMGB1-201ENST00000326004 KRASP01116 189 aa1.66□□□□□ -2.14
HMGB1-201ENST00000326004 IFNA21P01568 189 aa1.66□□□□□ -2.14
HMGB1-201ENST00000326004 PMP2P02689 132 aa1.66□□□□□ -2.14
HMGB1-201ENST00000326004 CD2P06729 351 aa1.66□□□□□ -2.14
HMGB1-201ENST00000326004 NBEAP1P0C6P0 100 aa1.66□□□□□ -2.14
HMGB1-201ENST00000326004 METTL15P1P0C7V9 234 aa1.66□□□□□ -2.14
HMGB1-201ENST00000326004 HIST1H1BP16401 226 aaKnown RBP1.66□□□□□ -2.14
HMGB1-201ENST00000326004 ZNF708P17019 499 aa1.66□□□□□ -2.14
HMGB1-201ENST00000326004 CA5AP35218 305 aa1.66□□□□□ -2.14
HMGB1-201ENST00000326004 SRP9P49458 86 aaKnown RBP1.66□□□□□ -2.14
HMGB1-201ENST00000326004 EVX1P49640 407 aa1.66□□□□□ -2.14
HMGB1-201ENST00000326004 RAB5CP51148 216 aa1.66□□□□□ -2.14
HMGB1-201ENST00000326004 IDH3GP51553 393 aaPredicted RBP1.66□□□□□ -2.14
HMGB1-201ENST00000326004 ERVS71-1P61550 626 aa1.66□□□□□ -2.14
HMGB1-201ENST00000326004 NCS1P62166 190 aa1.66□□□□□ -2.14
HMGB1-201ENST00000326004 RANP62826 216 aaKnown RBP1.66□□□□□ -2.14
HMGB1-201ENST00000326004 SLC35A2P78381 396 aa1.66□□□□□ -2.14
HMGB1-201ENST00000326004 RPL19P84098 196 aaKnown RBP1.66□□□□□ -2.14
HMGB1-201ENST00000326004 AESQ08117 197 aa1.66□□□□□ -2.14
HMGB1-201ENST00000326004 PEA15Q15121 130 aa1.66□□□□□ -2.14
HMGB1-201ENST00000326004 PYY3Q5JQD4 70 aa1.66□□□□□ -2.14
HMGB1-201ENST00000326004 XAF1Q6GPH4 301 aa1.66□□□□□ -2.14
HMGB1-201ENST00000326004 OR10K2Q6IF99 312 aa1.66□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 171.5 ms