RNA–Protein interactions for RNA: ENST00000292535.11

CUX1-201, Transcript of cut like homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CUX1, Length 13,747 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-201ENST00000292535 ASPHD2Q6ICH7 369 aa7.84□□□□□ -1.15
CUX1-201ENST00000292535 TRAV12-3A0A0B4J271 114 aa7.84□□□□□ -1.15
CUX1-201ENST00000292535 DPM2O94777 84 aa7.84□□□□□ -1.15
CUX1-201ENST00000292535 CTHRC1Q96CG8 243 aa7.84□□□□□ -1.15
CUX1-201ENST00000292535 YPEL1O60688 119 aa7.84□□□□□ -1.15
CUX1-201ENST00000292535 CD200R1LQ6Q8B3 271 aa7.84□□□□□ -1.15
CUX1-201ENST00000292535 YPEL2Q96QA6 119 aa7.84□□□□□ -1.15
CUX1-201ENST00000292535 SPSB3Q6PJ21 355 aa7.84□□□□□ -1.15
CUX1-201ENST00000292535 PPP1R32Q7Z5V6 425 aa7.84□□□□□ -1.15
CUX1-201ENST00000292535 MRPL20Q9BYC9 149 aaKnown RBP7.84□□□□□ -1.15
CUX1-201ENST00000292535 PSCAO43653 123 aa7.84□□□□□ -1.15
CUX1-201ENST00000292535 TRAV40A0A0B4J280 105 aa7.84□□□□□ -1.16
CUX1-201ENST00000292535 CEACAM8P31997 349 aaPredicted RBP7.84□□□□□ -1.16
CUX1-201ENST00000292535 LINC00158P58513 81 aa7.84□□□□□ -1.16
CUX1-201ENST00000292535 METRNQ9UJH8 293 aa7.84□□□□□ -1.16
CUX1-201ENST00000292535 TFF3Q07654 80 aa7.83□□□□□ -1.16
CUX1-201ENST00000292535 DERL1Q9BUN8 251 aa7.83□□□□□ -1.16
CUX1-201ENST00000292535 PAX8Q06710 450 aa7.83□□□□□ -1.16
CUX1-201ENST00000292535 Q5PR19 223 aa7.83□□□□□ -1.16
CUX1-201ENST00000292535 C12orf77C9JDV5 145 aa7.83□□□□□ -1.16
CUX1-201ENST00000292535 FUT5Q11128 374 aa7.83□□□□□ -1.16
CUX1-201ENST00000292535 TGIF1Q15583 401 aa7.83□□□□□ -1.16
CUX1-201ENST00000292535 MUC21Q5SSG8 566 aa7.83□□□□□ -1.16
CUX1-201ENST00000292535 GREB1LQ9C091 1923 aaPredicted RBP7.83□□□□□ -1.16
CUX1-201ENST00000292535 TRAV8-4A0A0B4J246 113 aa7.83□□□□□ -1.16
CUX1-201ENST00000292535 WDYHV1Q96HA8 205 aa7.83□□□□□ -1.16
CUX1-201ENST00000292535 ANAPC13Q9BS18 74 aa7.83□□□□□ -1.16
CUX1-201ENST00000292535 CHTOPQ9Y3Y2 248 aaKnown RBP7.83□□□□□ -1.16
CUX1-201ENST00000292535 C5orf30Q96GV9 206 aa7.83□□□□□ -1.16
CUX1-201ENST00000292535 MSGN1A6NI15 193 aa7.83□□□□□ -1.16
CUX1-201ENST00000292535 CGAP01215 116 aa7.83□□□□□ -1.16
CUX1-201ENST00000292535 EGR4Q05215 589 aa7.83□□□□□ -1.16
CUX1-201ENST00000292535 CLDN16Q9Y5I7 305 aa7.83□□□□□ -1.16
CUX1-201ENST00000292535 TEX43Q6ZNM6 134 aa7.83□□□□□ -1.16
CUX1-201ENST00000292535 CHCHD2Q9Y6H1 151 aaPredicted RBP7.83□□□□□ -1.16
CUX1-201ENST00000292535 NOTCH4Q99466 2003 aa7.83□□□□□ -1.16
CUX1-201ENST00000292535 WNT2P09544 360 aa7.82□□□□□ -1.16
CUX1-201ENST00000292535 ZP1P60852 638 aa7.82□□□□□ -1.16
CUX1-201ENST00000292535 CD300CQ08708 224 aa7.82□□□□□ -1.16
CUX1-201ENST00000292535 ATOH7Q8N100 152 aa7.82□□□□□ -1.16
CUX1-201ENST00000292535 JPT2Q9H910 190 aa7.82□□□□□ -1.16
CUX1-201ENST00000292535 EFNB1P98172 346 aa7.82□□□□□ -1.16
CUX1-201ENST00000292535 SCO2A0A1W2PP80 73 aa7.82□□□□□ -1.16
CUX1-201ENST00000292535 FBLIM1Q8WUP2 373 aa7.82□□□□□ -1.16
CUX1-201ENST00000292535 PQLC2LA1A4F0 135 aa7.82□□□□□ -1.16
CUX1-201ENST00000292535 F2Z2F3 143 aa7.82□□□□□ -1.16
CUX1-201ENST00000292535 ZNF585BQ52M93 769 aa7.82□□□□□ -1.16
CUX1-201ENST00000292535 RFLNBQ8N5W9 214 aa7.82□□□□□ -1.16
CUX1-201ENST00000292535 SLC25A28Q96A46 364 aa7.82□□□□□ -1.16
CUX1-201ENST00000292535 PRDM13Q9H4Q3 707 aa7.82□□□□□ -1.16
CUX1-201ENST00000292535 A0A0G2JK05 382 aa7.82□□□□□ -1.16
CUX1-201ENST00000292535 KLF4O43474 513 aa7.82□□□□□ -1.16
CUX1-201ENST00000292535 FOXA3P55318 350 aaPredicted RBP7.82□□□□□ -1.16
CUX1-201ENST00000292535 USMG5Q96IX5 58 aa7.82□□□□□ -1.16
CUX1-201ENST00000292535 SIGLEC5O15389 551 aa7.82□□□□□ -1.16
CUX1-201ENST00000292535 CD33P20138 364 aa7.82□□□□□ -1.16
CUX1-201ENST00000292535 FAM27E3Q08E93 113 aa7.82□□□□□ -1.16
CUX1-201ENST00000292535 LAGE3Q14657 143 aa7.82□□□□□ -1.16
CUX1-201ENST00000292535 C14orf144Q96I85 54 aa7.82□□□□□ -1.16
CUX1-201ENST00000292535 CHCHD5Q9BSY4 110 aa7.82□□□□□ -1.16
CUX1-201ENST00000292535 C15orf61A6NNL5 157 aa7.82□□□□□ -1.16
CUX1-201ENST00000292535 NSUN5P1Q3KNT7 163 aa7.82□□□□□ -1.16
CUX1-201ENST00000292535 TMEM144Q7Z5S9 345 aa7.82□□□□□ -1.16
CUX1-201ENST00000292535 RNF125Q96EQ8 232 aa7.82□□□□□ -1.16
CUX1-201ENST00000292535 C17orf100A8MU93 164 aa7.82□□□□□ -1.16
CUX1-201ENST00000292535 SLC17A3O00476 420 aa7.82□□□□□ -1.16
CUX1-201ENST00000292535 RFPL3SP0C7P2 107 aa7.82□□□□□ -1.16
CUX1-201ENST00000292535 NIT1Q86X76 327 aa7.82□□□□□ -1.16
CUX1-201ENST00000292535 LAMTOR3Q9UHA4 124 aa7.82□□□□□ -1.16
CUX1-201ENST00000292535 NAPSAO96009 420 aa7.82□□□□□ -1.16
CUX1-201ENST00000292535 UMODP07911 640 aa7.82□□□□□ -1.16
CUX1-201ENST00000292535 SIGLEC15Q6ZMC9 328 aa7.82□□□□□ -1.16
CUX1-201ENST00000292535 IGKV1D-42A0A075B6H8 117 aa7.81□□□□□ -1.16
CUX1-201ENST00000292535 FAM90A9PA6NNJ1 464 aa7.81□□□□□ -1.16
CUX1-201ENST00000292535 TDGF1P3P51864 188 aa7.81□□□□□ -1.16
CUX1-201ENST00000292535 APOMO95445 188 aa7.81□□□□□ -1.16
CUX1-201ENST00000292535 UCP1P25874 307 aa7.81□□□□□ -1.16
CUX1-201ENST00000292535 GTF3AQ92664 365 aaKnown RBP7.81□□□□□ -1.16
CUX1-201ENST00000292535 A0A087WX48 190 aa7.81□□□□□ -1.16
CUX1-201ENST00000292535 TOMM40O96008 361 aa7.81□□□□□ -1.16
CUX1-201ENST00000292535 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.81□□□□□ -1.16
CUX1-201ENST00000292535 PRR32B1ATL7 298 aa7.81□□□□□ -1.16
CUX1-201ENST00000292535 ORMDL2Q53FV1 153 aa7.81□□□□□ -1.16
CUX1-201ENST00000292535 ASCL4Q6XD76 172 aa7.81□□□□□ -1.16
CUX1-201ENST00000292535 ABHD17AQ96GS6 310 aa7.81□□□□□ -1.16
CUX1-201ENST00000292535 SMIM10L1P0DMW3 83 aa7.81□□□□□ -1.16
CUX1-201ENST00000292535 CHCHD1Q96BP2 118 aaKnown RBP7.81□□□□□ -1.16
CUX1-201ENST00000292535 SMIM10Q96HG1 83 aa7.81□□□□□ -1.16
CUX1-201ENST00000292535 IGHV1-2P23083 117 aa7.81□□□□□ -1.16
CUX1-201ENST00000292535 NHLRC3Q5JS37 347 aa7.81□□□□□ -1.16
CUX1-201ENST00000292535 MIR17HGQ75NE6 70 aa7.81□□□□□ -1.16
CUX1-201ENST00000292535 SMPXQ9UHP9 88 aa7.81□□□□□ -1.16
CUX1-201ENST00000292535 MPTX1A8MV57 137 aa7.81□□□□□ -1.16
CUX1-201ENST00000292535 REPIN1Q9BWE0 567 aaKnown RBP7.81□□□□□ -1.16
CUX1-201ENST00000292535 RNF114Q9Y508 228 aa7.8□□□□□ -1.16
CUX1-201ENST00000292535 ZNF415Q09FC8 603 aa7.8□□□□□ -1.16
CUX1-201ENST00000292535 LOC102723996A0A087X1L8 192 aa7.8□□□□□ -1.16
CUX1-201ENST00000292535 ZIC3O60481 467 aa7.8□□□□□ -1.16
CUX1-201ENST00000292535 SAA2-SAA4A0A096LPE2 208 aa7.8□□□□□ -1.16
CUX1-201ENST00000292535 IGHV3-11P01762 117 aa7.8□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms