RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 FBXL15Q9H469 300 aa16.07■□□□□ 0.16
VPS53-201ENST00000291074 LY96Q9Y6Y9 160 aa16.07■□□□□ 0.16
VPS53-201ENST00000291074 CBLN1P23435 193 aa16.07■□□□□ 0.16
VPS53-201ENST00000291074 LDLRAD2Q5SZI1 272 aa16.07■□□□□ 0.16
VPS53-201ENST00000291074 ASPHD1Q5U4P2 390 aa16.07■□□□□ 0.16
VPS53-201ENST00000291074 LINC00479Q96M42 142 aa16.07■□□□□ 0.16
VPS53-201ENST00000291074 V9GYV3 84 aa16.07■□□□□ 0.16
VPS53-201ENST00000291074 FXYD3Q14802 87 aa16.06■□□□□ 0.16
VPS53-201ENST00000291074 RPEQ96AT9 228 aa16.06■□□□□ 0.16
VPS53-201ENST00000291074 BTF3P20290 206 aaKnown RBP16.06■□□□□ 0.16
VPS53-201ENST00000291074 ADMP35318 185 aa16.06■□□□□ 0.16
VPS53-201ENST00000291074 COMPP49747 757 aaPredicted RBP16.06■□□□□ 0.16
VPS53-201ENST00000291074 NHLRC2Q8NBF2 726 aa16.06■□□□□ 0.16
VPS53-201ENST00000291074 BEND2Q8NDZ0 799 aa16.06■□□□□ 0.16
VPS53-201ENST00000291074 OR8B3Q8NGG8 313 aa16.06■□□□□ 0.16
VPS53-201ENST00000291074 OR8B2Q96RD0 313 aa16.06■□□□□ 0.16
VPS53-201ENST00000291074 RNF2Q99496 336 aa16.06■□□□□ 0.16
VPS53-201ENST00000291074 PAXXQ9BUH6 204 aa16.06■□□□□ 0.16
VPS53-201ENST00000291074 TNFRSF19Q9NS68 423 aa16.06■□□□□ 0.16
VPS53-201ENST00000291074 FSTL3O95633 263 aa16.05■□□□□ 0.16
VPS53-201ENST00000291074 HIST1H1BP16401 226 aaKnown RBP16.05■□□□□ 0.16
VPS53-201ENST00000291074 ORM2P19652 201 aa16.05■□□□□ 0.16
VPS53-201ENST00000291074 UCNP55089 124 aa16.05■□□□□ 0.16
VPS53-201ENST00000291074 OR1L4Q8NGR5 311 aa16.05■□□□□ 0.16
VPS53-201ENST00000291074 GSX1Q9H4S2 264 aaPredicted RBP16.05■□□□□ 0.16
VPS53-201ENST00000291074 IGLV2-8P01709 118 aa16.05■□□□□ 0.16
VPS53-201ENST00000291074 BPIFB3P59826 476 aa16.05■□□□□ 0.16
VPS53-201ENST00000291074 NHLH1Q02575 133 aa16.05■□□□□ 0.16
VPS53-201ENST00000291074 LINC00305Q7Z4B0 112 aa16.05■□□□□ 0.16
VPS53-201ENST00000291074 PPP1R27Q86WC6 154 aa16.05■□□□□ 0.16
VPS53-201ENST00000291074 BTF3L4Q96K17 158 aa16.05■□□□□ 0.16
VPS53-201ENST00000291074 FCN1O00602 326 aa16.04■□□□□ 0.16
VPS53-201ENST00000291074 IGF2BP2-AS1Q96M15 143 aa16.04■□□□□ 0.16
VPS53-201ENST00000291074 CRYGCP07315 174 aa16.04■□□□□ 0.16
VPS53-201ENST00000291074 MGST1P10620 155 aaKnown RBP16.04■□□□□ 0.16
VPS53-201ENST00000291074 TIGITQ495A1 244 aa16.04■□□□□ 0.16
VPS53-201ENST00000291074 CYB5R2Q6BCY4 276 aa16.04■□□□□ 0.16
VPS53-201ENST00000291074 OR8I2Q8N0Y5 310 aa16.04■□□□□ 0.16
VPS53-201ENST00000291074 CSMD1Q96PZ7 3565 aa16.04■□□□□ 0.16
VPS53-201ENST00000291074 TEX22C9J3V5 150 aa16.03■□□□□ 0.16
VPS53-201ENST00000291074 RPEL1Q2QD12 228 aa16.03■□□□□ 0.16
VPS53-201ENST00000291074 TMEM256Q8N2U0 113 aa16.03■□□□□ 0.16
VPS53-201ENST00000291074 OR1B1Q8NGR6 318 aa16.03■□□□□ 0.16
VPS53-201ENST00000291074 GRIFINA4D1Z8 144 aa16.03■□□□□ 0.16
VPS53-201ENST00000291074 SPINK4O60575 86 aa16.03■□□□□ 0.16
VPS53-201ENST00000291074 ARF6P62330 175 aa16.03■□□□□ 0.16
VPS53-201ENST00000291074 SELENOTP62341 195 aa16.03■□□□□ 0.16
VPS53-201ENST00000291074 FXYD5Q96DB9 178 aa16.03■□□□□ 0.16
VPS53-201ENST00000291074 YPEL3P61236 119 aaPredicted RBP16.02■□□□□ 0.16
VPS53-201ENST00000291074 PVRIGQ6DKI7 326 aa16.02■□□□□ 0.16
VPS53-201ENST00000291074 C8orf46Q8TAG6 207 aa16.02■□□□□ 0.16
VPS53-201ENST00000291074 HIVEP3Q5T1R4 2406 aa16.02■□□□□ 0.16
VPS53-201ENST00000291074 NUPR1O60356 82 aa16.02■□□□□ 0.16
VPS53-201ENST00000291074 TCL1AP56279 114 aa16.02■□□□□ 0.16
VPS53-201ENST00000291074 OR1L6Q8NGR2 347 aa16.02■□□□□ 0.16
VPS53-201ENST00000291074 ASH1LQ9NR48 2969 aaKnown RBP16.02■□□□□ 0.15
VPS53-201ENST00000291074 TRAV34A0A0B4J273 112 aa16.02■□□□□ 0.15
VPS53-201ENST00000291074 LY6LH3BQJ8 138 aa16.02■□□□□ 0.15
VPS53-201ENST00000291074 TIMM23O14925 209 aa16.02■□□□□ 0.15
VPS53-201ENST00000291074 LIPFP07098 398 aa16.02■□□□□ 0.15
VPS53-201ENST00000291074 KLRD1Q13241 179 aa16.02■□□□□ 0.15
VPS53-201ENST00000291074 ETFRF1Q6IPR1 90 aa16.02■□□□□ 0.15
VPS53-201ENST00000291074 ZNF329Q86UD4 541 aa16.02■□□□□ 0.15
VPS53-201ENST00000291074 GCGP01275 180 aa16.01■□□□□ 0.15
VPS53-201ENST00000291074 RBP4P02753 201 aa16.01■□□□□ 0.15
VPS53-201ENST00000291074 GZMBP10144 247 aa16.01■□□□□ 0.15
VPS53-201ENST00000291074 IER3P46695 156 aa16.01■□□□□ 0.15
VPS53-201ENST00000291074 SLC35B1P78383 322 aa16.01■□□□□ 0.15
VPS53-201ENST00000291074 SRSF12Q8WXF0 261 aaKnown RBP16.01■□□□□ 0.15
VPS53-201ENST00000291074 RAB1BQ9H0U4 201 aa16.01■□□□□ 0.15
VPS53-201ENST00000291074 AMMECR1Q9Y4X0 333 aaPredicted RBP16.01■□□□□ 0.15
VPS53-201ENST00000291074 CD24P25063 80 aa16.01■□□□□ 0.15
VPS53-201ENST00000291074 GNG5P63218 68 aa16.01■□□□□ 0.15
VPS53-201ENST00000291074 JOSD1Q15040 202 aaPredicted RBP16.01■□□□□ 0.15
VPS53-201ENST00000291074 PLGLAQ15195 96 aa16.01■□□□□ 0.15
VPS53-201ENST00000291074 MRPL41Q8IXM3 137 aaKnown RBP16.01■□□□□ 0.15
VPS53-201ENST00000291074 HILPDAQ9Y5L2 63 aa16.01■□□□□ 0.15
VPS53-201ENST00000291074 DDTP30046 118 aa16■□□□□ 0.15
VPS53-201ENST00000291074 GBGT1Q8N5D6 347 aa16■□□□□ 0.15
VPS53-201ENST00000291074 LY6G5BQ8NDX9 201 aa16■□□□□ 0.15
VPS53-201ENST00000291074 BLNKQ8WV28 456 aa16■□□□□ 0.15
VPS53-201ENST00000291074 MRPL18Q9H0U6 180 aaKnown RBP16■□□□□ 0.15
VPS53-201ENST00000291074 F11RQ9Y624 299 aaKnown RBP16■□□□□ 0.15
VPS53-201ENST00000291074 A0A1W2PRD5 423 aa16■□□□□ 0.15
VPS53-201ENST00000291074 A0A1W2PRF3 423 aa16■□□□□ 0.15
VPS53-201ENST00000291074 A0A1W2PRM7 423 aa16■□□□□ 0.15
VPS53-201ENST00000291074 RANP62826 216 aaKnown RBP16■□□□□ 0.15
VPS53-201ENST00000291074 SSX2Q16385 188 aa16■□□□□ 0.15
VPS53-201ENST00000291074 LEMD1Q68G75 181 aa16■□□□□ 0.15
VPS53-201ENST00000291074 WNK2Q9Y3S1 2297 aa16■□□□□ 0.15
VPS53-201ENST00000291074 CA1P00915 261 aaPredicted RBP15.99■□□□□ 0.15
VPS53-201ENST00000291074 TAS2R60P59551 318 aa15.99■□□□□ 0.15
VPS53-201ENST00000291074 REC114Q7Z4M0 266 aa15.99■□□□□ 0.15
VPS53-201ENST00000291074 TMEM116Q8NCL8 245 aa15.99■□□□□ 0.15
VPS53-201ENST00000291074 C22orf15Q8WYQ4 148 aa15.99■□□□□ 0.15
VPS53-201ENST00000291074 TRGV9Q99603 122 aa15.99■□□□□ 0.15
VPS53-201ENST00000291074 OSTCQ9NRP0 149 aa15.99■□□□□ 0.15
VPS53-201ENST00000291074 CBLN4Q9NTU7 201 aa15.99■□□□□ 0.15
VPS53-201ENST00000291074 MED13LQ71F56 2210 aa15.99■□□□□ 0.15
VPS53-201ENST00000291074 TRAV9-1A0A075B6T8 112 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms