RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 ZNF407Q9C0G0 2248 aa8.92□□□□□ -0.98
CD44-201ENST00000263398 TRBV6-6A0A0A6YYG2 114 aa8.92□□□□□ -0.98
CD44-201ENST00000263398 H7C1H1 209 aa8.92□□□□□ -0.98
CD44-201ENST00000263398 GFRA3O60609 400 aa8.92□□□□□ -0.98
CD44-201ENST00000263398 IGKV1-5P01602 117 aa8.92□□□□□ -0.98
CD44-201ENST00000263398 GNG5P63218 68 aa8.92□□□□□ -0.98
CD44-201ENST00000263398 TMEM170BQ5T4T1 132 aa8.92□□□□□ -0.98
CD44-201ENST00000263398 RNF144BQ7Z419 303 aa8.92□□□□□ -0.98
CD44-201ENST00000263398 IGHV3OR16-8A0A075B7F1 116 aa8.92□□□□□ -0.98
CD44-201ENST00000263398 C9JCJ5 164 aa8.92□□□□□ -0.98
CD44-201ENST00000263398 CXCL1P09341 107 aa8.92□□□□□ -0.98
CD44-201ENST00000263398 FHL1Q13642 323 aa8.92□□□□□ -0.98
CD44-201ENST00000263398 CENPVQ7Z7K6 275 aaPredicted RBP8.92□□□□□ -0.98
CD44-201ENST00000263398 ZCCHC24Q8N2G6 241 aaKnown RBP8.92□□□□□ -0.98
CD44-201ENST00000263398 FANCMQ8IYD8 2048 aa8.92□□□□□ -0.98
CD44-201ENST00000263398 TSC2P49815 1807 aa8.92□□□□□ -0.98
CD44-201ENST00000263398 IGHV3-66A0A0C4DH42 116 aa8.92□□□□□ -0.98
CD44-201ENST00000263398 IGKV3-20P01619 116 aa8.92□□□□□ -0.98
CD44-201ENST00000263398 ARL6IP6Q8N6S5 226 aa8.92□□□□□ -0.98
CD44-201ENST00000263398 TNFRSF14Q92956 283 aa8.92□□□□□ -0.98
CD44-201ENST00000263398 ST6GALNAC6Q969X2 333 aa8.92□□□□□ -0.98
CD44-201ENST00000263398 ASCL2Q99929 193 aa8.92□□□□□ -0.98
CD44-201ENST00000263398 NLRC5Q86WI3 1866 aa8.91□□□□□ -0.98
CD44-201ENST00000263398 USF3Q68DE3 2245 aa8.91□□□□□ -0.98
CD44-201ENST00000263398 IGHV1-46P01743 117 aa8.91□□□□□ -0.98
CD44-201ENST00000263398 TIMP3P35625 211 aa8.91□□□□□ -0.98
CD44-201ENST00000263398 HIST3H2BBQ8N257 126 aa8.91□□□□□ -0.98
CD44-201ENST00000263398 RNASE6Q93091 150 aaKnown RBP8.91□□□□□ -0.98
CD44-201ENST00000263398 DUX5Q96PT3 197 aa8.91□□□□□ -0.98
CD44-201ENST00000263398 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP8.91□□□□□ -0.98
CD44-201ENST00000263398 IL18BPO95998 194 aa8.91□□□□□ -0.98
CD44-201ENST00000263398 CSRP1P21291 193 aaKnown RBP8.91□□□□□ -0.98
CD44-201ENST00000263398 CLEC19AQ6UXS0 136 aa8.91□□□□□ -0.98
CD44-201ENST00000263398 ST6GALNAC3Q8NDV1 305 aa8.91□□□□□ -0.98
CD44-201ENST00000263398 SCGB3A1Q96QR1 104 aa8.91□□□□□ -0.98
CD44-201ENST00000263398 FOXC2Q99958 501 aa8.91□□□□□ -0.98
CD44-201ENST00000263398 SLC50A1Q9BRV3 221 aa8.91□□□□□ -0.98
CD44-201ENST00000263398 SSBP4Q9BWG4 385 aaPredicted RBP8.91□□□□□ -0.98
CD44-201ENST00000263398 SNAI2O43623 268 aa8.91□□□□□ -0.98
CD44-201ENST00000263398 CFPP27918 469 aa8.91□□□□□ -0.98
CD44-201ENST00000263398 PCP4P48539 62 aa8.91□□□□□ -0.98
CD44-201ENST00000263398 FOXL1Q12952 345 aa8.91□□□□□ -0.98
CD44-201ENST00000263398 DMRTA1Q5VZB9 504 aa8.91□□□□□ -0.98
CD44-201ENST00000263398 Q6ZS49 121 aa8.91□□□□□ -0.98
CD44-201ENST00000263398 PLSCR4Q9NRQ2 329 aa8.91□□□□□ -0.98
CD44-201ENST00000263398 MED13LQ71F56 2210 aa8.9□□□□□ -0.98
CD44-201ENST00000263398 DMRTA2Q96SC8 542 aa8.9□□□□□ -0.98
CD44-201ENST00000263398 LYL1P12980 280 aa8.9□□□□□ -0.98
CD44-201ENST00000263398 NIT1Q86X76 327 aa8.9□□□□□ -0.98
CD44-201ENST00000263398 PSG8Q9UQ74 426 aa8.9□□□□□ -0.98
CD44-201ENST00000263398 THADAQ6YHU6 1953 aa8.9□□□□□ -0.98
CD44-201ENST00000263398 OR10J3Q5JRS4 329 aa8.9□□□□□ -0.98
CD44-201ENST00000263398 MEIG1Q5JSS6 88 aa8.9□□□□□ -0.98
CD44-201ENST00000263398 LINC01551Q86U37 167 aa8.9□□□□□ -0.98
CD44-201ENST00000263398 TSKUQ8WUA8 353 aa8.9□□□□□ -0.98
CD44-201ENST00000263398 TRAV9-2A0A087WT02 112 aa8.9□□□□□ -0.99
CD44-201ENST00000263398 LINC00614P0C842 121 aa8.9□□□□□ -0.99
CD44-201ENST00000263398 CD59P13987 128 aa8.9□□□□□ -0.99
CD44-201ENST00000263398 FOXL2NBQ6ZUU3 175 aa8.9□□□□□ -0.99
CD44-201ENST00000263398 CCL19Q99731 98 aa8.9□□□□□ -0.99
CD44-201ENST00000263398 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.89□□□□□ -0.99
CD44-201ENST00000263398 AMBPP02760 352 aa8.89□□□□□ -0.99
CD44-201ENST00000263398 PPBPP02775 128 aa8.89□□□□□ -0.99
CD44-201ENST00000263398 SAMD13Q5VXD3 122 aa8.89□□□□□ -0.99
CD44-201ENST00000263398 AGMATQ9BSE5 352 aa8.89□□□□□ -0.99
CD44-201ENST00000263398 MOB4Q9Y3A3 225 aa8.89□□□□□ -0.99
CD44-201ENST00000263398 SELLP14151 372 aa8.89□□□□□ -0.99
CD44-201ENST00000263398 OR10W1Q8NGF6 305 aa8.89□□□□□ -0.99
CD44-201ENST00000263398 C19orf67A6NJJ6 358 aa8.88□□□□□ -0.99
CD44-201ENST00000263398 HGFACQ04756 655 aa8.88□□□□□ -0.99
CD44-201ENST00000263398 ASCL4Q6XD76 172 aa8.88□□□□□ -0.99
CD44-201ENST00000263398 ATP5L2Q7Z4Y8 100 aa8.88□□□□□ -0.99
CD44-201ENST00000263398 C8orf46Q8TAG6 207 aa8.88□□□□□ -0.99
CD44-201ENST00000263398 MRPL16Q9NX20 251 aaKnown RBP8.88□□□□□ -0.99
CD44-201ENST00000263398 TNFRSF18Q9Y5U5 241 aa8.88□□□□□ -0.99
CD44-201ENST00000263398 SUMO2P61956 95 aaKnown RBP8.88□□□□□ -0.99
CD44-201ENST00000263398 PLAURQ03405 335 aa8.88□□□□□ -0.99
CD44-201ENST00000263398 GFI1BQ5VTD9 330 aa8.88□□□□□ -0.99
CD44-201ENST00000263398 CLDN16Q9Y5I7 305 aa8.88□□□□□ -0.99
CD44-201ENST00000263398 E9PQ18 207 aa8.88□□□□□ -0.99
CD44-201ENST00000263398 TIMM23O14925 209 aa8.88□□□□□ -0.99
CD44-201ENST00000263398 HBDP02042 147 aa8.88□□□□□ -0.99
CD44-201ENST00000263398 PAX1P15863 534 aa8.88□□□□□ -0.99
CD44-201ENST00000263398 NUTF2P61970 127 aaKnown RBP8.88□□□□□ -0.99
CD44-201ENST00000263398 C10orf55Q5SWW7 151 aa8.88□□□□□ -0.99
CD44-201ENST00000263398 LINC00469Q8N7U9 141 aa8.88□□□□□ -0.99
CD44-201ENST00000263398 TMEM190Q8WZ59 177 aa8.88□□□□□ -0.99
CD44-201ENST00000263398 FAM168AQ92567 244 aa8.88□□□□□ -0.99
CD44-201ENST00000263398 NXT2Q9NPJ8 142 aaKnown RBP8.88□□□□□ -0.99
CD44-201ENST00000263398 PLXNA3P51805 1871 aa8.87□□□□□ -0.99
CD44-201ENST00000263398 NPFFO15130 113 aa8.87□□□□□ -0.99
CD44-201ENST00000263398 B3GALT5-AS1P59052 145 aa8.87□□□□□ -0.99
CD44-201ENST00000263398 Q0VFX4 171 aa8.87□□□□□ -0.99
CD44-201ENST00000263398 Q6P435 159 aa8.87□□□□□ -0.99
CD44-201ENST00000263398 C7orf69Q9H7B7 122 aa8.87□□□□□ -0.99
CD44-201ENST00000263398 BDP1A6H8Y1 2624 aa8.87□□□□□ -0.99
CD44-201ENST00000263398 HEATR5AQ86XA9 2040 aa8.87□□□□□ -0.99
CD44-201ENST00000263398 E9PLN8 166 aa8.87□□□□□ -0.99
CD44-201ENST00000263398 TMEM50AO95807 157 aa8.87□□□□□ -0.99
CD44-201ENST00000263398 CA1P00915 261 aaPredicted RBP8.87□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms