RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 PSMB11A5LHX3 300 aa10.63□□□□□ -0.71
USP40-201ENST00000251722 K7EP34 96 aa10.63□□□□□ -0.71
USP40-201ENST00000251722 IGKV1D-43A0A0B4J1Z2 117 aa10.63□□□□□ -0.71
USP40-201ENST00000251722 LYPD3O95274 346 aa10.63□□□□□ -0.71
USP40-201ENST00000251722 PCM1Q15154 2024 aa10.63□□□□□ -0.71
USP40-201ENST00000251722 LRTM2Q8N967 370 aa10.62□□□□□ -0.71
USP40-201ENST00000251722 LINC01549A6NIU2 74 aa10.62□□□□□ -0.71
USP40-201ENST00000251722 C15orf61A6NNL5 157 aa10.62□□□□□ -0.71
USP40-201ENST00000251722 H7C2G1 150 aa10.62□□□□□ -0.71
USP40-201ENST00000251722 NDUFC2O95298 119 aa10.62□□□□□ -0.71
USP40-201ENST00000251722 GNLYP22749 145 aa10.62□□□□□ -0.71
USP40-201ENST00000251722 ZNF56Q15929 161 aa10.62□□□□□ -0.71
USP40-201ENST00000251722 OTORQ9NRC9 128 aa10.62□□□□□ -0.71
USP40-201ENST00000251722 HERV-K104P63124 156 aa10.62□□□□□ -0.71
USP40-201ENST00000251722 ICAM4Q14773 271 aa10.62□□□□□ -0.71
USP40-201ENST00000251722 MORN2Q502X0 79 aa10.62□□□□□ -0.71
USP40-201ENST00000251722 C10orf91Q5T1B1 145 aa10.62□□□□□ -0.71
USP40-201ENST00000251722 ASCL2Q99929 193 aa10.62□□□□□ -0.71
USP40-201ENST00000251722 GNB1LQ9BYB4 327 aa10.62□□□□□ -0.71
USP40-201ENST00000251722 HOXA3O43365 443 aaPredicted RBP10.62□□□□□ -0.71
USP40-201ENST00000251722 NBEAP1P0C6P0 100 aa10.62□□□□□ -0.71
USP40-201ENST00000251722 RPL23P62829 140 aaKnown RBP10.62□□□□□ -0.71
USP40-201ENST00000251722 ZNF841Q6ZN19 808 aa10.62□□□□□ -0.71
USP40-201ENST00000251722 LINC01356Q8N9X3 169 aa10.62□□□□□ -0.71
USP40-201ENST00000251722 EAF1Q96JC9 268 aaPredicted RBP10.62□□□□□ -0.71
USP40-201ENST00000251722 EDA2RQ9HAV5 297 aa10.62□□□□□ -0.71
USP40-201ENST00000251722 PINLYPA6NC86 204 aa10.62□□□□□ -0.71
USP40-201ENST00000251722 J3KT08 172 aa10.62□□□□□ -0.71
USP40-201ENST00000251722 REG1AP05451 166 aa10.62□□□□□ -0.71
USP40-201ENST00000251722 CELA3BP08861 270 aa10.62□□□□□ -0.71
USP40-201ENST00000251722 ZNF502Q8TBZ5 544 aa10.62□□□□□ -0.71
USP40-201ENST00000251722 TNFRSF18Q9Y5U5 241 aa10.62□□□□□ -0.71
USP40-201ENST00000251722 TRAV26-1A0A087WT03 109 aa10.61□□□□□ -0.71
USP40-201ENST00000251722 GHRHP01286 108 aa10.61□□□□□ -0.71
USP40-201ENST00000251722 DTX1Q86Y01 620 aa10.61□□□□□ -0.71
USP40-201ENST00000251722 TMEM167AQ8TBQ9 72 aa10.61□□□□□ -0.71
USP40-201ENST00000251722 SRSF12Q8WXF0 261 aaKnown RBP10.61□□□□□ -0.71
USP40-201ENST00000251722 NPCDR1Q9BY65 106 aa10.61□□□□□ -0.71
USP40-201ENST00000251722 FOXA2Q9Y261 457 aaPredicted RBP10.61□□□□□ -0.71
USP40-201ENST00000251722 LILRA1O75019 489 aa10.61□□□□□ -0.71
USP40-201ENST00000251722 HBBP68871 147 aa10.61□□□□□ -0.71
USP40-201ENST00000251722 SPSB3Q6PJ21 355 aa10.61□□□□□ -0.71
USP40-201ENST00000251722 DLX4Q92988 240 aaPredicted RBP10.61□□□□□ -0.71
USP40-201ENST00000251722 ERVK11-1P61568 191 aa10.61□□□□□ -0.71
USP40-201ENST00000251722 RNF114Q9Y508 228 aa10.61□□□□□ -0.71
USP40-201ENST00000251722 C9orf118A6NHY6 69 aa10.61□□□□□ -0.71
USP40-201ENST00000251722 CRXO43186 299 aaPredicted RBP10.61□□□□□ -0.71
USP40-201ENST00000251722 MLNRO43193 412 aa10.61□□□□□ -0.71
USP40-201ENST00000251722 PSG3Q16557 428 aa10.61□□□□□ -0.71
USP40-201ENST00000251722 STHQ8IWL8 128 aa10.61□□□□□ -0.71
USP40-201ENST00000251722 DUX3Q96PT4 197 aa10.61□□□□□ -0.71
USP40-201ENST00000251722 SAA2-SAA4A0A096LPE2 208 aa10.6□□□□□ -0.71
USP40-201ENST00000251722 SAA2P0DJI9 122 aaPredicted RBP10.6□□□□□ -0.71
USP40-201ENST00000251722 PLA2G2CQ5R387 149 aa10.6□□□□□ -0.71
USP40-201ENST00000251722 SRSF8Q9BRL6 282 aaKnown RBP10.6□□□□□ -0.71
USP40-201ENST00000251722 TRGV11A0A075B6L2 103 aa10.6□□□□□ -0.71
USP40-201ENST00000251722 MUC21A0A0G2JKD1 596 aa10.6□□□□□ -0.71
USP40-201ENST00000251722 MUC21A0A140T8X8 626 aa10.6□□□□□ -0.71
USP40-201ENST00000251722 RRHO14718 337 aa10.6□□□□□ -0.71
USP40-201ENST00000251722 OVOL1O14753 267 aa10.6□□□□□ -0.71
USP40-201ENST00000251722 CCL25O15444 150 aa10.6□□□□□ -0.71
USP40-201ENST00000251722 SNAI2O43623 268 aa10.6□□□□□ -0.71
USP40-201ENST00000251722 ATP5LO75964 103 aa10.6□□□□□ -0.71
USP40-201ENST00000251722 ADCYAP1P18509 176 aa10.6□□□□□ -0.71
USP40-201ENST00000251722 MUC21Q5SSG8 566 aa10.6□□□□□ -0.71
USP40-201ENST00000251722 CHCHD1Q96BP2 118 aaKnown RBP10.6□□□□□ -0.71
USP40-201ENST00000251722 C2orf83Q53S99 150 aa10.6□□□□□ -0.71
USP40-201ENST00000251722 GOLT1AQ6ZVE7 132 aa10.6□□□□□ -0.71
USP40-201ENST00000251722 RTN4RQ9BZR6 473 aa10.6□□□□□ -0.71
USP40-201ENST00000251722 TRAV8-1A0A0A6YYK1 113 aa10.6□□□□□ -0.71
USP40-201ENST00000251722 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.6□□□□□ -0.71
USP40-201ENST00000251722 TMEM178BH3BS89 294 aa10.6□□□□□ -0.71
USP40-201ENST00000251722 SAA1P0DJI8 122 aaPredicted RBP10.6□□□□□ -0.71
USP40-201ENST00000251722 C16orf54Q6UWD8 224 aa10.6□□□□□ -0.71
USP40-201ENST00000251722 ITLN2Q8WWU7 325 aaPredicted RBP10.6□□□□□ -0.71
USP40-201ENST00000251722 PLAUP00749 431 aa10.6□□□□□ -0.71
USP40-201ENST00000251722 LGALS3P17931 250 aaKnown RBP10.6□□□□□ -0.71
USP40-201ENST00000251722 KIR3DS1Q14943 382 aa10.6□□□□□ -0.71
USP40-201ENST00000251722 MEIG1Q5JSS6 88 aa10.6□□□□□ -0.71
USP40-201ENST00000251722 CLEC19AQ6UXS0 136 aa10.6□□□□□ -0.71
USP40-201ENST00000251722 RPUSD1Q9UJJ7 312 aaKnown RBP10.6□□□□□ -0.71
USP40-201ENST00000251722 C17orf98A8MV24 154 aa10.59□□□□□ -0.71
USP40-201ENST00000251722 FAM19A2Q8N3H0 131 aa10.59□□□□□ -0.71
USP40-201ENST00000251722 GGTLC1Q9BX51 225 aa10.59□□□□□ -0.71
USP40-201ENST00000251722 PRCDQ00LT1 54 aa10.59□□□□□ -0.71
USP40-201ENST00000251722 A0A0G2JNJ9 132 aa10.59□□□□□ -0.71
USP40-201ENST00000251722 CACNG7P62955 275 aa10.59□□□□□ -0.71
USP40-201ENST00000251722 GAGE2AQ6NT46 116 aa10.59□□□□□ -0.71
USP40-201ENST00000251722 USMG5Q96IX5 58 aa10.59□□□□□ -0.71
USP40-201ENST00000251722 Q9UFV3 132 aa10.59□□□□□ -0.71
USP40-201ENST00000251722 SIP14410 1827 aa10.59□□□□□ -0.71
USP40-201ENST00000251722 ZFC3H1O60293 1989 aaKnown RBP10.59□□□□□ -0.71
USP40-201ENST00000251722 FAM231BA6NCW3 169 aa10.58□□□□□ -0.72
USP40-201ENST00000251722 MSGN1A6NI15 193 aa10.58□□□□□ -0.72
USP40-201ENST00000251722 FOXI3A8MTJ6 420 aaPredicted RBP10.58□□□□□ -0.72
USP40-201ENST00000251722 TRACP01848 142 aa10.58□□□□□ -0.72
USP40-201ENST00000251722 TRAV2A0A0B4J234 112 aa10.58□□□□□ -0.72
USP40-201ENST00000251722 TRAV41A0A0B4J266 112 aa10.58□□□□□ -0.72
USP40-201ENST00000251722 LOC389332A0A1B0GUA5 103 aa10.58□□□□□ -0.72
USP40-201ENST00000251722 FOXL1Q12952 345 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms