RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 AREGP15514 252 aa6.93□□□□□ -1.3
VPS4B-201ENST00000238497 GALR1P47211 349 aa6.93□□□□□ -1.3
VPS4B-201ENST00000238497 TCL1AP56279 114 aa6.93□□□□□ -1.3
VPS4B-201ENST00000238497 RUSC1-AS1Q66K80 236 aa6.93□□□□□ -1.3
VPS4B-201ENST00000238497 DDB2Q92466 427 aa6.93□□□□□ -1.3
VPS4B-201ENST00000238497 TMEM133Q9H2Q1 129 aa6.93□□□□□ -1.3
VPS4B-201ENST00000238497 NIT2Q9NQR4 276 aa6.93□□□□□ -1.3
VPS4B-201ENST00000238497 NAT8Q9UHE5 227 aa6.93□□□□□ -1.3
VPS4B-201ENST00000238497 MDFIC2A0A1B0GVS7 189 aa6.92□□□□□ -1.3
VPS4B-201ENST00000238497 FCN1O00602 326 aa6.92□□□□□ -1.3
VPS4B-201ENST00000238497 RBFOX2O43251 390 aaKnown RBP eCLIP6.92□□□□□ -1.3
VPS4B-201ENST00000238497 NDUFA2O43678 99 aa6.92□□□□□ -1.3
VPS4B-201ENST00000238497 LINC00869P0C866 280 aa6.92□□□□□ -1.3
VPS4B-201ENST00000238497 IL3RAP26951 378 aa6.92□□□□□ -1.3
VPS4B-201ENST00000238497 CRYBB3P26998 211 aa6.92□□□□□ -1.3
VPS4B-201ENST00000238497 PRRX1P54821 245 aa6.92□□□□□ -1.3
VPS4B-201ENST00000238497 RHOBP62745 196 aa6.92□□□□□ -1.3
VPS4B-201ENST00000238497 OR5I1Q13606 314 aa6.92□□□□□ -1.3
VPS4B-201ENST00000238497 GAMTQ14353 236 aa6.92□□□□□ -1.3
VPS4B-201ENST00000238497 ELOBQ15370 118 aa6.92□□□□□ -1.3
VPS4B-201ENST00000238497 GFI1BQ5VTD9 330 aa6.92□□□□□ -1.3
VPS4B-201ENST00000238497 DPPA3Q6W0C5 159 aa6.92□□□□□ -1.3
VPS4B-201ENST00000238497 OR4X1Q8NH49 305 aa6.92□□□□□ -1.3
VPS4B-201ENST00000238497 SDF2L1Q9HCN8 221 aa6.92□□□□□ -1.3
VPS4B-201ENST00000238497 ZNF355PQ9NSJ1 428 aa6.92□□□□□ -1.3
VPS4B-201ENST00000238497 IGHV2-26A0A0B4J1V2 119 aa6.92□□□□□ -1.3
VPS4B-201ENST00000238497 ZNF320A2RRD8 509 aa6.92□□□□□ -1.3
VPS4B-201ENST00000238497 SLC17A3O00476 420 aa6.92□□□□□ -1.3
VPS4B-201ENST00000238497 COX7A2P2O60397 106 aa6.92□□□□□ -1.3
VPS4B-201ENST00000238497 NDUFS6O75380 124 aaKnown RBP6.92□□□□□ -1.3
VPS4B-201ENST00000238497 MT-CO2P00403 227 aa6.92□□□□□ -1.3
VPS4B-201ENST00000238497 IGHV3-23P01764 117 aa6.92□□□□□ -1.3
VPS4B-201ENST00000238497 RANP62826 216 aaKnown RBP6.92□□□□□ -1.3
VPS4B-201ENST00000238497 MEF2CQ06413 473 aaPredicted RBP6.92□□□□□ -1.3
VPS4B-201ENST00000238497 TMEM14BQ9NUH8 114 aa6.92□□□□□ -1.3
VPS4B-201ENST00000238497 TENM1Q9UKZ4 2725 aa6.91□□□□□ -1.3
VPS4B-201ENST00000238497 PYYP10082 97 aa6.91□□□□□ -1.3
VPS4B-201ENST00000238497 RPL23P62829 140 aaKnown RBP6.91□□□□□ -1.3
VPS4B-201ENST00000238497 WT1-ASQ06250 92 aa6.91□□□□□ -1.3
VPS4B-201ENST00000238497 IGKV1OR2-108A0A075B7D4 117 aa6.91□□□□□ -1.3
VPS4B-201ENST00000238497 TRAV34A0A0B4J273 112 aa6.91□□□□□ -1.3
VPS4B-201ENST00000238497 SH2D7A6NKC9 451 aaPredicted RBP6.91□□□□□ -1.3
VPS4B-201ENST00000238497 PPP5D1E7EU14 171 aa6.91□□□□□ -1.3
VPS4B-201ENST00000238497 F6UZH7 168 aa6.91□□□□□ -1.3
VPS4B-201ENST00000238497 HILS1P60008 231 aa6.91□□□□□ -1.3
VPS4B-201ENST00000238497 FXYD3Q14802 87 aa6.91□□□□□ -1.3
VPS4B-201ENST00000238497 ZNF114Q8NC26 417 aa6.91□□□□□ -1.3
VPS4B-201ENST00000238497 RBM14Q96PK6 669 aaKnown RBP6.91□□□□□ -1.3
VPS4B-201ENST00000238497 SLC25A33Q9BSK2 321 aa6.91□□□□□ -1.3
VPS4B-201ENST00000238497 CLEC7AQ9BXN2 247 aa6.91□□□□□ -1.3
VPS4B-201ENST00000238497 FKBP11Q9NYL4 201 aa6.91□□□□□ -1.3
VPS4B-201ENST00000238497 TIMM23O14925 209 aa6.91□□□□□ -1.3
VPS4B-201ENST00000238497 BTF3P20290 206 aaKnown RBP6.91□□□□□ -1.3
VPS4B-201ENST00000238497 NPPCP23582 126 aa6.91□□□□□ -1.3
VPS4B-201ENST00000238497 GCHFRP30047 84 aa6.91□□□□□ -1.3
VPS4B-201ENST00000238497 RPL27AP46776 148 aaKnown RBP6.91□□□□□ -1.3
VPS4B-201ENST00000238497 PRCDQ00LT1 54 aa6.91□□□□□ -1.3
VPS4B-201ENST00000238497 PAX8Q06710 450 aa6.91□□□□□ -1.3
VPS4B-201ENST00000238497 OSR1Q8TAX0 266 aaPredicted RBP6.91□□□□□ -1.3
VPS4B-201ENST00000238497 LINC00479Q96M42 142 aa6.91□□□□□ -1.3
VPS4B-201ENST00000238497 FOXA2Q9Y261 457 aaPredicted RBP6.91□□□□□ -1.3
VPS4B-201ENST00000238497 CXorf1O96002 111 aa6.9□□□□□ -1.3
VPS4B-201ENST00000238497 LYZP61626 148 aa6.9□□□□□ -1.3
VPS4B-201ENST00000238497 UBE2L3P68036 154 aaKnown RBP6.9□□□□□ -1.3
VPS4B-201ENST00000238497 ZNF436-AS1Q8NC38 126 aaPredicted RBP6.9□□□□□ -1.3
VPS4B-201ENST00000238497 OR5AU1Q8NGC0 362 aa6.9□□□□□ -1.3
VPS4B-201ENST00000238497 ESM1Q9NQ30 184 aa6.9□□□□□ -1.3
VPS4B-201ENST00000238497 YTHDF2Q9Y5A9 579 aaKnown RBP6.9□□□□□ -1.3
VPS4B-201ENST00000238497 TIMM9Q9Y5J7 89 aa6.9□□□□□ -1.3
VPS4B-201ENST00000238497 ZNF98A6NK75 572 aa6.9□□□□□ -1.31
VPS4B-201ENST00000238497 FABP4P15090 132 aa6.9□□□□□ -1.31
VPS4B-201ENST00000238497 SUB1P53999 127 aaKnown RBP eCLIP6.9□□□□□ -1.31
VPS4B-201ENST00000238497 ERVFC1-1P60608 527 aa6.9□□□□□ -1.31
VPS4B-201ENST00000238497 MORN5Q5VZ52 161 aa6.9□□□□□ -1.31
VPS4B-201ENST00000238497 OR10D4PQ8NGN7 298 aa6.9□□□□□ -1.31
VPS4B-201ENST00000238497 ASCL2Q99929 193 aa6.9□□□□□ -1.31
VPS4B-201ENST00000238497 GPR61Q9BZJ8 451 aa6.9□□□□□ -1.31
VPS4B-201ENST00000238497 MANBALQ9NQG1 85 aa6.9□□□□□ -1.31
VPS4B-201ENST00000238497 MRPL36Q9P0J6 103 aaKnown RBP6.9□□□□□ -1.31
VPS4B-201ENST00000238497 FUT9Q9Y231 359 aa6.9□□□□□ -1.31
VPS4B-201ENST00000238497 TRAV1-1A0A0B4J248 108 aa6.89□□□□□ -1.31
VPS4B-201ENST00000238497 A0A1W2PPI3 338 aa6.89□□□□□ -1.31
VPS4B-201ENST00000238497 RNASE2P10153 161 aaKnown RBP6.89□□□□□ -1.31
VPS4B-201ENST00000238497 PRTN3P24158 256 aa6.89□□□□□ -1.31
VPS4B-201ENST00000238497 DEFB112Q30KQ8 113 aa6.89□□□□□ -1.31
VPS4B-201ENST00000238497 ZNF841Q6ZN19 808 aa6.89□□□□□ -1.31
VPS4B-201ENST00000238497 SGMS2Q8NHU3 365 aa6.89□□□□□ -1.31
VPS4B-201ENST00000238497 VSTM2AQ8TAG5 236 aa6.89□□□□□ -1.31
VPS4B-201ENST00000238497 TOLLIPQ9H0E2 274 aa6.89□□□□□ -1.31
VPS4B-201ENST00000238497 SMDT1Q9H4I9 107 aa6.89□□□□□ -1.31
VPS4B-201ENST00000238497 FNDC4Q9H6D8 234 aaPredicted RBP6.89□□□□□ -1.31
VPS4B-201ENST00000238497 DSCAML1Q8TD84 2053 aa6.89□□□□□ -1.31
VPS4B-201ENST00000238497 A0A1B0GWJ7 208 aa6.89□□□□□ -1.31
VPS4B-201ENST00000238497 DNAJC9-AS1A6NH13 148 aa6.89□□□□□ -1.31
VPS4B-201ENST00000238497 AP4M1O00189 453 aa6.89□□□□□ -1.31
VPS4B-201ENST00000238497 LIPFP07098 398 aa6.89□□□□□ -1.31
VPS4B-201ENST00000238497 TRGC1P0CF51 173 aa6.89□□□□□ -1.31
VPS4B-201ENST00000238497 C9orf152Q5JTZ5 239 aa6.89□□□□□ -1.31
VPS4B-201ENST00000238497 PQLC2Q6ZP29 291 aa6.89□□□□□ -1.31
VPS4B-201ENST00000238497 OR5B3Q8NH48 314 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms