RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 GUSBP11Q6P575 273 aa12.04□□□□□ -0.48
PTPRA-201ENST00000216877 ANAPC13Q9BS18 74 aa12.04□□□□□ -0.48
PTPRA-201ENST00000216877 ARFGEF3Q5TH69 2177 aa12.04□□□□□ -0.48
PTPRA-201ENST00000216877 CLEC3BP05452 202 aa12.04□□□□□ -0.48
PTPRA-201ENST00000216877 GNG3P63215 75 aa12.04□□□□□ -0.48
PTPRA-201ENST00000216877 RNF183Q96D59 192 aa12.04□□□□□ -0.48
PTPRA-201ENST00000216877 FRYLO94915 3013 aa12.04□□□□□ -0.48
PTPRA-201ENST00000216877 P01737 135 aa12.04□□□□□ -0.48
PTPRA-201ENST00000216877 RNFT1Q5M7Z0 435 aa12.04□□□□□ -0.48
PTPRA-201ENST00000216877 ZADH2Q8N4Q0 377 aa12.04□□□□□ -0.48
PTPRA-201ENST00000216877 VGLL1Q99990 258 aa12.04□□□□□ -0.48
PTPRA-201ENST00000216877 SRXN1Q9BYN0 137 aa12.04□□□□□ -0.48
PTPRA-201ENST00000216877 PRRG4Q9BZD6 226 aa12.04□□□□□ -0.48
PTPRA-201ENST00000216877 ZNF391Q9UJN7 358 aa12.04□□□□□ -0.48
PTPRA-201ENST00000216877 INTS1Q8N201 2190 aaKnown RBP12.04□□□□□ -0.48
PTPRA-201ENST00000216877 MYOD1P15172 320 aa12.03□□□□□ -0.48
PTPRA-201ENST00000216877 C20orf78Q9BR46 151 aa12.03□□□□□ -0.48
PTPRA-201ENST00000216877 IDI2-AS1Q9NZ38 188 aa12.03□□□□□ -0.48
PTPRA-201ENST00000216877 ZNF716A6NP11 495 aa12.03□□□□□ -0.48
PTPRA-201ENST00000216877 CELA2AP08217 269 aa12.03□□□□□ -0.48
PTPRA-201ENST00000216877 MLANAQ16655 118 aa12.03□□□□□ -0.48
PTPRA-201ENST00000216877 SPACA9Q96E40 222 aaPredicted RBP12.03□□□□□ -0.48
PTPRA-201ENST00000216877 C18orf15Q96N68 181 aa12.03□□□□□ -0.48
PTPRA-201ENST00000216877 COL25A1Q9BXS0 654 aaPredicted RBP12.03□□□□□ -0.48
PTPRA-201ENST00000216877 LINC00470Q9BZP3 86 aa12.03□□□□□ -0.48
PTPRA-201ENST00000216877 SMIM20Q8N5G0 67 aa12.03□□□□□ -0.48
PTPRA-201ENST00000216877 SP9P0CG40 484 aa12.02□□□□□ -0.48
PTPRA-201ENST00000216877 CT45A6P0DMU7 189 aa12.02□□□□□ -0.48
PTPRA-201ENST00000216877 CT45A5P0DMU8 189 aa12.02□□□□□ -0.48
PTPRA-201ENST00000216877 CT45A7P0DMV0 189 aa12.02□□□□□ -0.48
PTPRA-201ENST00000216877 PLP2Q04941 152 aa12.02□□□□□ -0.48
PTPRA-201ENST00000216877 KLF5Q13887 457 aaPredicted RBP12.02□□□□□ -0.48
PTPRA-201ENST00000216877 CT45A1Q5HYN5 189 aa12.02□□□□□ -0.48
PTPRA-201ENST00000216877 CT45A3Q8NHU0 189 aa12.02□□□□□ -0.48
PTPRA-201ENST00000216877 CHCHD1Q96BP2 118 aaKnown RBP12.02□□□□□ -0.48
PTPRA-201ENST00000216877 FLYWCH2Q96CP2 140 aaKnown RBP12.02□□□□□ -0.48
PTPRA-201ENST00000216877 CPAMD8Q8IZJ3 1885 aa12.02□□□□□ -0.48
PTPRA-201ENST00000216877 C12orf77C9JDV5 145 aa12.02□□□□□ -0.49
PTPRA-201ENST00000216877 SYT8Q8NBV8 401 aa12.02□□□□□ -0.49
PTPRA-201ENST00000216877 DCTN5Q9BTE1 182 aa12.02□□□□□ -0.49
PTPRA-201ENST00000216877 TCF19Q9Y242 345 aa12.02□□□□□ -0.49
PTPRA-201ENST00000216877 LMO7DNF2Z398 122 aa12.02□□□□□ -0.49
PTPRA-201ENST00000216877 FAM120AOSQ5T036 256 aa12.02□□□□□ -0.49
PTPRA-201ENST00000216877 FAM214BQ7L5A3 538 aa12.02□□□□□ -0.49
PTPRA-201ENST00000216877 MRPL16Q9NX20 251 aaKnown RBP12.02□□□□□ -0.49
PTPRA-201ENST00000216877 SMAD7O15105 426 aaKnown RBP12.01□□□□□ -0.49
PTPRA-201ENST00000216877 AGFG2O95081 481 aa12.01□□□□□ -0.49
PTPRA-201ENST00000216877 IGLV2-8P01709 118 aa12.01□□□□□ -0.49
PTPRA-201ENST00000216877 MPC1Q9Y5U8 109 aa12.01□□□□□ -0.49
PTPRA-201ENST00000216877 FAM87AP0C7U9 286 aa12.01□□□□□ -0.49
PTPRA-201ENST00000216877 KLF13Q9Y2Y9 288 aaPredicted RBP12.01□□□□□ -0.49
PTPRA-201ENST00000216877 TANC2Q9HCD6 1990 aa12.01□□□□□ -0.49
PTPRA-201ENST00000216877 C21orf140B9A014 251 aa12.01□□□□□ -0.49
PTPRA-201ENST00000216877 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP12.01□□□□□ -0.49
PTPRA-201ENST00000216877 SPINT2O43291 252 aa12.01□□□□□ -0.49
PTPRA-201ENST00000216877 MRPL33O75394 65 aaKnown RBP12.01□□□□□ -0.49
PTPRA-201ENST00000216877 ACP1P24666 158 aa12.01□□□□□ -0.49
PTPRA-201ENST00000216877 FXYD2P54710 66 aa12.01□□□□□ -0.49
PTPRA-201ENST00000216877 TMEM164Q5U3C3 297 aa12.01□□□□□ -0.49
PTPRA-201ENST00000216877 ARRDC1-AS1Q9H2J1 176 aa12□□□□□ -0.49
PTPRA-201ENST00000216877 UFC1Q9Y3C8 167 aa12□□□□□ -0.49
PTPRA-201ENST00000216877 APOMO95445 188 aa12□□□□□ -0.49
PTPRA-201ENST00000216877 A0A1B0GW15 77 aa12□□□□□ -0.49
PTPRA-201ENST00000216877 C19orf67A6NJJ6 358 aa12□□□□□ -0.49
PTPRA-201ENST00000216877 CCL3P10147 92 aa12□□□□□ -0.49
PTPRA-201ENST00000216877 COL8A1P27658 744 aa12□□□□□ -0.49
PTPRA-201ENST00000216877 GAGE13Q4V321 117 aa12□□□□□ -0.49
PTPRA-201ENST00000216877 PPP1R32Q7Z5V6 425 aa12□□□□□ -0.49
PTPRA-201ENST00000216877 OR9G1Q8NH87 305 aa12□□□□□ -0.49
PTPRA-201ENST00000216877 ZNF479Q96JC4 524 aa12□□□□□ -0.49
PTPRA-201ENST00000216877 FRYQ5TBA9 3013 aa12□□□□□ -0.49
PTPRA-201ENST00000216877 TMSB15BA0A087X1C1 80 aa11.99□□□□□ -0.49
PTPRA-201ENST00000216877 VWC2LB2RUY7 222 aa11.99□□□□□ -0.49
PTPRA-201ENST00000216877 COX7A2P2O60397 106 aa11.99□□□□□ -0.49
PTPRA-201ENST00000216877 C8orf88P0DMB2 117 aa11.99□□□□□ -0.49
PTPRA-201ENST00000216877 TMEM249Q2WGJ8 235 aa11.99□□□□□ -0.49
PTPRA-201ENST00000216877 BOKQ9UMX3 212 aaPredicted RBP11.99□□□□□ -0.49
PTPRA-201ENST00000216877 GFRA3O60609 400 aa11.99□□□□□ -0.49
PTPRA-201ENST00000216877 S1PR3Q99500 378 aa11.99□□□□□ -0.49
PTPRA-201ENST00000216877 TMEM131Q92545 1883 aa11.99□□□□□ -0.49
PTPRA-201ENST00000216877 TMEM30CPA0ZSE6 113 aa11.99□□□□□ -0.49
PTPRA-201ENST00000216877 PEX7O00628 323 aa11.99□□□□□ -0.49
PTPRA-201ENST00000216877 NKX2-8O15522 239 aa11.99□□□□□ -0.49
PTPRA-201ENST00000216877 KIR2DL2P43627 348 aaPredicted RBP11.99□□□□□ -0.49
PTPRA-201ENST00000216877 CCL7P80098 99 aa11.99□□□□□ -0.49
PTPRA-201ENST00000216877 ZNF418Q8TF45 676 aaPredicted RBP11.99□□□□□ -0.49
PTPRA-201ENST00000216877 ASCL2Q99929 193 aa11.99□□□□□ -0.49
PTPRA-201ENST00000216877 COL6A6A6NMZ7 2263 aa11.98□□□□□ -0.49
PTPRA-201ENST00000216877 PGPA6NDG6 321 aa11.98□□□□□ -0.49
PTPRA-201ENST00000216877 RPL39P5Q59GN2 51 aa11.98□□□□□ -0.49
PTPRA-201ENST00000216877 ZNF826PQ6ZT77 177 aa11.98□□□□□ -0.49
PTPRA-201ENST00000216877 CELSR3Q9NYQ7 3312 aa11.98□□□□□ -0.49
PTPRA-201ENST00000216877 OR4X2Q8NGF9 303 aa11.98□□□□□ -0.49
PTPRA-201ENST00000216877 ZNF414Q96IQ9 312 aa11.98□□□□□ -0.49
PTPRA-201ENST00000216877 WNT9BO14905 357 aa11.98□□□□□ -0.49
PTPRA-201ENST00000216877 CRXO43186 299 aaPredicted RBP11.98□□□□□ -0.49
PTPRA-201ENST00000216877 REG1BP48304 166 aa11.98□□□□□ -0.49
PTPRA-201ENST00000216877 LEAP2Q969E1 77 aa11.98□□□□□ -0.49
PTPRA-201ENST00000216877 PAXXQ9BUH6 204 aa11.98□□□□□ -0.49
PTPRA-201ENST00000216877 SPANXB1Q9NS25 103 aaPredicted RBP11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms