RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 MBD3L3A6NE82 208 aaPredicted RBP8.6□□□□□ -1.03
USP28-201ENST00000003302 DPRXA6NFQ7 191 aa8.6□□□□□ -1.03
USP28-201ENST00000003302 MBD3L5A6NJ08 208 aaPredicted RBP8.6□□□□□ -1.03
USP28-201ENST00000003302 ZNF253O75346 499 aa8.6□□□□□ -1.03
USP28-201ENST00000003302 TNXAQ16473 311 aa8.6□□□□□ -1.03
USP28-201ENST00000003302 LDLRAD2Q5SZI1 272 aa8.6□□□□□ -1.03
USP28-201ENST00000003302 MBD3L2Q8NHZ7 208 aaPredicted RBP8.6□□□□□ -1.03
USP28-201ENST00000003302 H1FXQ92522 213 aaKnown RBP8.6□□□□□ -1.03
USP28-201ENST00000003302 MBD6Q96DN6 1003 aa8.6□□□□□ -1.03
USP28-201ENST00000003302 NIPBLQ6KC79 2804 aaeCLIP8.6□□□□□ -1.03
USP28-201ENST00000003302 H0YJW9 148 aa8.6□□□□□ -1.03
USP28-201ENST00000003302 BRS3P32247 399 aa8.6□□□□□ -1.03
USP28-201ENST00000003302 CFHR2P36980 270 aa8.6□□□□□ -1.03
USP28-201ENST00000003302 UBE2L3P68036 154 aaKnown RBP8.6□□□□□ -1.03
USP28-201ENST00000003302 EBLN2Q6P2I7 272 aa8.6□□□□□ -1.03
USP28-201ENST00000003302 C1orf162Q8NEQ5 155 aaPredicted RBP8.6□□□□□ -1.03
USP28-201ENST00000003302 RNF7Q9UBF6 113 aa8.6□□□□□ -1.03
USP28-201ENST00000003302 A0A1W2PPI3 338 aa8.59□□□□□ -1.03
USP28-201ENST00000003302 ORM2P19652 201 aa8.59□□□□□ -1.03
USP28-201ENST00000003302 CD69Q07108 199 aa8.59□□□□□ -1.03
USP28-201ENST00000003302 FAM222BQ8WU58 562 aa8.59□□□□□ -1.03
USP28-201ENST00000003302 TSKUQ8WUA8 353 aa8.59□□□□□ -1.03
USP28-201ENST00000003302 NDUFA4L2Q9NRX3 87 aa8.59□□□□□ -1.03
USP28-201ENST00000003302 CD40P25942 277 aa8.59□□□□□ -1.03
USP28-201ENST00000003302 TRAT1Q6PIZ9 186 aa8.59□□□□□ -1.03
USP28-201ENST00000003302 WFDC8Q8IUA0 241 aa8.59□□□□□ -1.03
USP28-201ENST00000003302 TCTEX1D1Q8N7M0 179 aa8.59□□□□□ -1.03
USP28-201ENST00000003302 NDUFB8O95169 186 aa8.59□□□□□ -1.03
USP28-201ENST00000003302 FAM87AP0C7U9 286 aa8.59□□□□□ -1.03
USP28-201ENST00000003302 CTRLP40313 264 aa8.59□□□□□ -1.03
USP28-201ENST00000003302 ADIPOQQ15848 244 aa8.59□□□□□ -1.03
USP28-201ENST00000003302 NUP35Q8NFH5 326 aa8.59□□□□□ -1.03
USP28-201ENST00000003302 CLEC7AQ9BXN2 247 aa8.59□□□□□ -1.03
USP28-201ENST00000003302 SAP30LQ9HAJ7 183 aa8.59□□□□□ -1.03
USP28-201ENST00000003302 LPAR2Q9HBW0 351 aa8.59□□□□□ -1.03
USP28-201ENST00000003302 ZNF785A8K8V0 405 aa8.59□□□□□ -1.04
USP28-201ENST00000003302 IGLV2-23P01705 113 aa8.59□□□□□ -1.04
USP28-201ENST00000003302 C11orf42Q8N5U0 333 aa8.59□□□□□ -1.04
USP28-201ENST00000003302 C17orf77Q96MU5 243 aa8.59□□□□□ -1.04
USP28-201ENST00000003302 C9JCJ5 164 aa8.58□□□□□ -1.04
USP28-201ENST00000003302 THBDP07204 575 aa8.58□□□□□ -1.04
USP28-201ENST00000003302 OR5G3P0C626 314 aa8.58□□□□□ -1.04
USP28-201ENST00000003302 RBMXL3Q8N7X1 1067 aaKnown RBP8.58□□□□□ -1.04
USP28-201ENST00000003302 C18orf32Q8TCD1 76 aa8.58□□□□□ -1.04
USP28-201ENST00000003302 IL19Q9UHD0 177 aa8.58□□□□□ -1.04
USP28-201ENST00000003302 ZNF469Q96JG9 3925 aaPredicted RBP8.58□□□□□ -1.04
USP28-201ENST00000003302 PIGBOS1A0A0B4J2F0 54 aa8.58□□□□□ -1.04
USP28-201ENST00000003302 DIRC3C9JPN6 131 aa8.58□□□□□ -1.04
USP28-201ENST00000003302 M0R143 59 aa8.58□□□□□ -1.04
USP28-201ENST00000003302 NUDT10Q8NFP7 164 aa8.58□□□□□ -1.04
USP28-201ENST00000003302 NUDT11Q96G61 164 aa8.58□□□□□ -1.04
USP28-201ENST00000003302 PMCHL2Q9BQD1 86 aa8.58□□□□□ -1.04
USP28-201ENST00000003302 BSPH1Q075Z2 132 aa8.58□□□□□ -1.04
USP28-201ENST00000003302 TIMM23BQ5SRD1 257 aa8.58□□□□□ -1.04
USP28-201ENST00000003302 GTSF1Q8WW33 167 aa8.58□□□□□ -1.04
USP28-201ENST00000003302 FXYD5Q96DB9 178 aa8.58□□□□□ -1.04
USP28-201ENST00000003302 ENY2Q9NPA8 101 aa8.58□□□□□ -1.04
USP28-201ENST00000003302 PPOXP50336 477 aa8.57□□□□□ -1.04
USP28-201ENST00000003302 ZNF137PP52743 207 aa8.57□□□□□ -1.04
USP28-201ENST00000003302 C7orf69Q9H7B7 122 aa8.57□□□□□ -1.04
USP28-201ENST00000003302 SLC25A10Q9UBX3 287 aaPredicted RBP8.57□□□□□ -1.04
USP28-201ENST00000003302 RPL19P84098 196 aaKnown RBP8.57□□□□□ -1.04
USP28-201ENST00000003302 PIP4P1Q86T03 277 aa8.57□□□□□ -1.04
USP28-201ENST00000003302 A0A0G2JNJ9 132 aa8.57□□□□□ -1.04
USP28-201ENST00000003302 ZNF329Q86UD4 541 aa8.57□□□□□ -1.04
USP28-201ENST00000003302 Q9UFV3 132 aa8.57□□□□□ -1.04
USP28-201ENST00000003302 AMMECR1Q9Y4X0 333 aaPredicted RBP8.57□□□□□ -1.04
USP28-201ENST00000003302 FAM90A9PA6NNJ1 464 aa8.57□□□□□ -1.04
USP28-201ENST00000003302 HIGD1CA8MV81 97 aa8.57□□□□□ -1.04
USP28-201ENST00000003302 KLK10O43240 276 aa8.57□□□□□ -1.04
USP28-201ENST00000003302 TPPP2P59282 170 aa8.57□□□□□ -1.04
USP28-201ENST00000003302 LINC00305Q7Z4B0 112 aa8.57□□□□□ -1.04
USP28-201ENST00000003302 HYPMO75409 117 aa8.56□□□□□ -1.04
USP28-201ENST00000003302 C8orf88P0DMB2 117 aa8.56□□□□□ -1.04
USP28-201ENST00000003302 ESDP10768 282 aa8.56□□□□□ -1.04
USP28-201ENST00000003302 GRNP28799 593 aaKnown RBP8.56□□□□□ -1.04
USP28-201ENST00000003302 TCTAP57738 103 aa8.56□□□□□ -1.04
USP28-201ENST00000003302 C21orf62-AS1Q17RA5 79 aa8.56□□□□□ -1.04
USP28-201ENST00000003302 SMIM27A0A1W2PRY6 76 aa8.56□□□□□ -1.04
USP28-201ENST00000003302 EXOC3-AS1Q8N2X6 119 aa8.56□□□□□ -1.04
USP28-201ENST00000003302 VAMP8Q9BV40 100 aa8.56□□□□□ -1.04
USP28-201ENST00000003302 MUC21A0A0G2JKD1 596 aa8.56□□□□□ -1.04
USP28-201ENST00000003302 MUC21A0A140T8X8 626 aa8.56□□□□□ -1.04
USP28-201ENST00000003302 POU2AF1Q16633 256 aa8.56□□□□□ -1.04
USP28-201ENST00000003302 SPATA45Q537H7 98 aa8.56□□□□□ -1.04
USP28-201ENST00000003302 KLF17Q5JT82 389 aaPredicted RBP8.56□□□□□ -1.04
USP28-201ENST00000003302 MUC21Q5SSG8 566 aa8.56□□□□□ -1.04
USP28-201ENST00000003302 ZNF833PQ6ZTB9 187 aa8.56□□□□□ -1.04
USP28-201ENST00000003302 OR2D3Q8NGH3 330 aa8.56□□□□□ -1.04
USP28-201ENST00000003302 ZNF257Q9Y2Q1 563 aa8.56□□□□□ -1.04
USP28-201ENST00000003302 POLQO75417 2590 aa8.56□□□□□ -1.04
USP28-201ENST00000003302 SIGLECL1Q8N7X8 197 aa8.56□□□□□ -1.04
USP28-201ENST00000003302 OR1B1Q8NGR6 318 aa8.56□□□□□ -1.04
USP28-201ENST00000003302 MIEN1Q9BRT3 115 aa8.56□□□□□ -1.04
USP28-201ENST00000003302 MXRA5Q9NR99 2828 aa8.55□□□□□ -1.04
USP28-201ENST00000003302 OVOL3O00110 214 aa8.55□□□□□ -1.04
USP28-201ENST00000003302 ENSAO43768 121 aaKnown RBP8.55□□□□□ -1.04
USP28-201ENST00000003302 ZNF324O75467 553 aaPredicted RBP8.55□□□□□ -1.04
USP28-201ENST00000003302 USF1P22415 310 aaPredicted RBP8.55□□□□□ -1.04
USP28-201ENST00000003302 RPP30P78346 268 aaKnown RBP8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 304.3 ms