RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 TRACP01848 142 aa4.76□□□□□ -1.65
SCN1A-216ENST00000637968 TAL2Q16559 108 aa4.76□□□□□ -1.65
SCN1A-216ENST00000637968 MKXQ8IYA7 352 aa4.76□□□□□ -1.65
SCN1A-216ENST00000637968 CIARTQ8N365 385 aaPredicted RBP4.76□□□□□ -1.65
SCN1A-216ENST00000637968 DEFB126Q9BYW3 111 aa4.76□□□□□ -1.65
SCN1A-216ENST00000637968 LHFPL6Q9Y693 200 aa4.76□□□□□ -1.65
SCN1A-216ENST00000637968 LOC389332A0A1B0GUA5 103 aa4.76□□□□□ -1.65
SCN1A-216ENST00000637968 C2CD4DB7Z1M9 353 aa4.76□□□□□ -1.65
SCN1A-216ENST00000637968 FRMD6-AS1P0C7T7 363 aa4.76□□□□□ -1.65
SCN1A-216ENST00000637968 LGALS9BQ3B8N2 356 aa4.76□□□□□ -1.65
SCN1A-216ENST00000637968 PRR30Q53SZ7 412 aaPredicted RBP4.76□□□□□ -1.65
SCN1A-216ENST00000637968 MBNL2Q5VZF2 373 aaKnown RBP4.76□□□□□ -1.65
SCN1A-216ENST00000637968 MIC13Q5XKP0 118 aa4.76□□□□□ -1.65
SCN1A-216ENST00000637968 LGALS9CQ6DKI2 356 aa4.76□□□□□ -1.65
SCN1A-216ENST00000637968 SFTA2Q6UW10 78 aa4.76□□□□□ -1.65
SCN1A-216ENST00000637968 LINC00173Q6ZV60 143 aa4.76□□□□□ -1.65
SCN1A-216ENST00000637968 MOB3BQ86TA1 216 aa4.76□□□□□ -1.65
SCN1A-216ENST00000637968 FAM234AQ9H0X4 552 aa4.76□□□□□ -1.65
SCN1A-216ENST00000637968 CDIP1Q9H305 208 aa4.76□□□□□ -1.65
SCN1A-216ENST00000637968 LIME1Q9H400 295 aa4.76□□□□□ -1.65
SCN1A-216ENST00000637968 C11orf1Q9H5F2 150 aa4.76□□□□□ -1.65
SCN1A-216ENST00000637968 AAMDCQ9H7C9 122 aa4.76□□□□□ -1.65
SCN1A-216ENST00000637968 SYNGR3O43761 229 aa4.76□□□□□ -1.65
SCN1A-216ENST00000637968 IL11RAQ14626 422 aa4.76□□□□□ -1.65
SCN1A-216ENST00000637968 ZIC1Q15915 447 aa4.76□□□□□ -1.65
SCN1A-216ENST00000637968 Q6Q795 121 aa4.76□□□□□ -1.65
SCN1A-216ENST00000637968 TMEM219Q86XT9 240 aa4.76□□□□□ -1.65
SCN1A-216ENST00000637968 LINC00479Q96M42 142 aa4.76□□□□□ -1.65
SCN1A-216ENST00000637968 MPDZO75970 2070 aa4.75□□□□□ -1.65
SCN1A-216ENST00000637968 NPIPB6E9PJ23 425 aa4.75□□□□□ -1.65
SCN1A-216ENST00000637968 FHL1Q13642 323 aa4.75□□□□□ -1.65
SCN1A-216ENST00000637968 KLF17Q5JT82 389 aaPredicted RBP4.75□□□□□ -1.65
SCN1A-216ENST00000637968 SP5Q6BEB4 398 aaPredicted RBP4.75□□□□□ -1.65
SCN1A-216ENST00000637968 C1QL2Q7Z5L3 287 aa4.75□□□□□ -1.65
SCN1A-216ENST00000637968 HIGD1BQ9P298 99 aa4.75□□□□□ -1.65
SCN1A-216ENST00000637968 SBF1O95248 1867 aa4.75□□□□□ -1.65
SCN1A-216ENST00000637968 TCRBV4S1A1TA0A5B7 111 aa4.75□□□□□ -1.65
SCN1A-216ENST00000637968 K7EN84 100 aa4.75□□□□□ -1.65
SCN1A-216ENST00000637968 DEFA4P12838 97 aa4.75□□□□□ -1.65
SCN1A-216ENST00000637968 COL8A1P27658 744 aa4.75□□□□□ -1.65
SCN1A-216ENST00000637968 DLX6P56179 175 aa4.75□□□□□ -1.65
SCN1A-216ENST00000637968 EDDM3AQ14507 147 aa4.75□□□□□ -1.65
SCN1A-216ENST00000637968 SLC25A47Q6Q0C1 308 aa4.75□□□□□ -1.65
SCN1A-216ENST00000637968 RPRMLQ8N4K4 120 aa4.75□□□□□ -1.65
SCN1A-216ENST00000637968 BCORP1Q8N888 145 aa4.75□□□□□ -1.65
SCN1A-216ENST00000637968 IFI27L1Q96BM0 104 aa4.75□□□□□ -1.65
SCN1A-216ENST00000637968 ZNF831Q5JPB2 1677 aa4.75□□□□□ -1.65
SCN1A-216ENST00000637968 TNFSF14O43557 240 aa4.75□□□□□ -1.65
SCN1A-216ENST00000637968 CGAP01215 116 aa4.75□□□□□ -1.65
SCN1A-216ENST00000637968 SRD5A1P18405 259 aa4.75□□□□□ -1.65
SCN1A-216ENST00000637968 HERVK_113P63121 156 aa4.75□□□□□ -1.65
SCN1A-216ENST00000637968 UBE2L3P68036 154 aaKnown RBP4.75□□□□□ -1.65
SCN1A-216ENST00000637968 DEFB133Q30KQ1 61 aa4.75□□□□□ -1.65
SCN1A-216ENST00000637968 GJC3Q8NFK1 279 aa4.75□□□□□ -1.65
SCN1A-216ENST00000637968 REPIN1Q9BWE0 567 aaKnown RBP4.75□□□□□ -1.65
SCN1A-216ENST00000637968 ZNF106Q9H2Y7 1883 aaKnown RBP4.75□□□□□ -1.65
SCN1A-216ENST00000637968 ALPK2Q86TB3 2170 aa4.74□□□□□ -1.65
SCN1A-216ENST00000637968 NDUFA7O95182 113 aa4.74□□□□□ -1.65
SCN1A-216ENST00000637968 HBDP02042 147 aa4.74□□□□□ -1.65
SCN1A-216ENST00000637968 HERVK_113P61574 105 aa4.74□□□□□ -1.65
SCN1A-216ENST00000637968 SLC35E4Q6ICL7 350 aa4.74□□□□□ -1.65
SCN1A-216ENST00000637968 TMEM14EPQ6UXP3 125 aa4.74□□□□□ -1.65
SCN1A-216ENST00000637968 Q6ZS92 163 aa4.74□□□□□ -1.65
SCN1A-216ENST00000637968 CYYR1Q96J86 154 aa4.74□□□□□ -1.65
SCN1A-216ENST00000637968 NABP2Q9BQ15 211 aa4.74□□□□□ -1.65
SCN1A-216ENST00000637968 MRPL32Q9BYC8 188 aaKnown RBP4.74□□□□□ -1.65
SCN1A-216ENST00000637968 MSRB2Q9Y3D2 182 aa4.74□□□□□ -1.65
SCN1A-216ENST00000637968 LSM4Q9Y4Z0 139 aaKnown RBP4.74□□□□□ -1.65
SCN1A-216ENST00000637968 IGKV1D-42A0A075B6H8 117 aa4.74□□□□□ -1.65
SCN1A-216ENST00000637968 SRYQ05066 204 aa4.74□□□□□ -1.65
SCN1A-216ENST00000637968 ZNF56Q15929 161 aa4.74□□□□□ -1.65
SCN1A-216ENST00000637968 PIGYQ3MUY2 71 aa4.74□□□□□ -1.65
SCN1A-216ENST00000637968 TMEM160Q9NX00 188 aa4.74□□□□□ -1.65
SCN1A-216ENST00000637968 PKIGQ9Y2B9 76 aa4.74□□□□□ -1.65
SCN1A-216ENST00000637968 LCTP09848 1927 aa4.74□□□□□ -1.65
SCN1A-216ENST00000637968 HMGA1P17096 107 aaKnown RBP4.74□□□□□ -1.65
SCN1A-216ENST00000637968 FOLR3P41439 243 aa4.74□□□□□ -1.65
SCN1A-216ENST00000637968 SPINK9Q5DT21 86 aa4.74□□□□□ -1.65
SCN1A-216ENST00000637968 TEPPQ6URK8 271 aa4.74□□□□□ -1.65
SCN1A-216ENST00000637968 PCP2Q8IVA1 136 aa4.74□□□□□ -1.65
SCN1A-216ENST00000637968 EMC6Q9BV81 110 aa4.74□□□□□ -1.65
SCN1A-216ENST00000637968 TRBV20OR9-2A0A075B6H5 130 aa4.74□□□□□ -1.65
SCN1A-216ENST00000637968 C5orf67F2Z3F1 127 aa4.74□□□□□ -1.65
SCN1A-216ENST00000637968 LINC01565O15544 149 aa4.74□□□□□ -1.65
SCN1A-216ENST00000637968 MPV17P39210 176 aa4.74□□□□□ -1.65
SCN1A-216ENST00000637968 ZNF138P52744 262 aa4.74□□□□□ -1.65
SCN1A-216ENST00000637968 FOXC1Q12948 553 aa4.74□□□□□ -1.65
SCN1A-216ENST00000637968 C11orf52Q96A22 123 aa4.74□□□□□ -1.65
SCN1A-216ENST00000637968 ZNF747Q9BV97 191 aa4.74□□□□□ -1.65
SCN1A-216ENST00000637968 LOC107984640A0A0U1RRK4 108 aa4.73□□□□□ -1.65
SCN1A-216ENST00000637968 FGFRL1Q8N441 504 aa4.73□□□□□ -1.65
SCN1A-216ENST00000637968 GATD1Q8NB37 220 aa4.73□□□□□ -1.65
SCN1A-216ENST00000637968 FLYWCH2Q96CP2 140 aaKnown RBP4.73□□□□□ -1.65
SCN1A-216ENST00000637968 CCL26Q9Y258 94 aa4.73□□□□□ -1.65
SCN1A-216ENST00000637968 WDR83OSQ9Y284 106 aa4.73□□□□□ -1.65
SCN1A-216ENST00000637968 WDR90Q96KV7 1748 aa4.73□□□□□ -1.65
SCN1A-216ENST00000637968 ASCC3Q8N3C0 2202 aaKnown RBP4.73□□□□□ -1.65
SCN1A-216ENST00000637968 M0R135 149 aa4.73□□□□□ -1.65
SCN1A-216ENST00000637968 UQCRQO14949 82 aa4.73□□□□□ -1.65
SCN1A-216ENST00000637968 ZG16O60844 167 aa4.73□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms