RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 SIGLEC9Q9Y336 463 aa14.74□□□□□ -0.05
CLN3-263ENST00000637871 ARL14EPLP0DKL9 152 aa14.74□□□□□ -0.05
CLN3-263ENST00000637871 AREGP15514 252 aa14.74□□□□□ -0.05
CLN3-263ENST00000637871 OR10J1P30954 320 aa14.74□□□□□ -0.05
CLN3-263ENST00000637871 TPTE2P1Q5T6R2 138 aa14.74□□□□□ -0.05
CLN3-263ENST00000637871 CLEC2AQ6UVW9 174 aa14.74□□□□□ -0.05
CLN3-263ENST00000637871 THAP8Q8NA92 274 aa14.74□□□□□ -0.05
CLN3-263ENST00000637871 OR1L4Q8NGR5 311 aa14.74□□□□□ -0.05
CLN3-263ENST00000637871 C22orf15Q8WYQ4 148 aa14.74□□□□□ -0.05
CLN3-263ENST00000637871 FAM168AQ92567 244 aa14.74□□□□□ -0.05
CLN3-263ENST00000637871 Q96MF0 132 aa14.74□□□□□ -0.05
CLN3-263ENST00000637871 SSX3Q99909 188 aa14.74□□□□□ -0.05
CLN3-263ENST00000637871 CGB1A6NKQ9 187 aa14.73□□□□□ -0.05
CLN3-263ENST00000637871 C22orf46C9J442 243 aa14.73□□□□□ -0.05
CLN3-263ENST00000637871 OR5G3P0C626 314 aa14.73□□□□□ -0.05
CLN3-263ENST00000637871 PDLIM4P50479 330 aa14.73□□□□□ -0.05
CLN3-263ENST00000637871 WT1-ASQ06250 92 aa14.73□□□□□ -0.05
CLN3-263ENST00000637871 ELOBQ15370 118 aa14.73□□□□□ -0.05
CLN3-263ENST00000637871 CST9LP1Q5W188 147 aa14.73□□□□□ -0.05
CLN3-263ENST00000637871 PPP1R27Q86WC6 154 aa14.73□□□□□ -0.05
CLN3-263ENST00000637871 C10orf105Q8TEF2 133 aa14.73□□□□□ -0.05
CLN3-263ENST00000637871 UHRF2Q96PU4 802 aa14.73□□□□□ -0.05
CLN3-263ENST00000637871 PFDN5Q99471 154 aa14.73□□□□□ -0.05
CLN3-263ENST00000637871 BPESC1Q9GZL8 116 aa14.73□□□□□ -0.05
CLN3-263ENST00000637871 CD99P14209 185 aa14.72□□□□□ -0.05
CLN3-263ENST00000637871 HABP2Q14520 560 aaPredicted RBP14.72□□□□□ -0.05
CLN3-263ENST00000637871 CCDC144NLQ6NUI1 221 aa14.72□□□□□ -0.05
CLN3-263ENST00000637871 RPUSD4Q96CM3 377 aaKnown RBP14.72□□□□□ -0.05
CLN3-263ENST00000637871 BTF3L4Q96K17 158 aa14.72□□□□□ -0.05
CLN3-263ENST00000637871 S100A6P06703 90 aa14.71□□□□□ -0.05
CLN3-263ENST00000637871 COX7A1P24310 79 aa14.71□□□□□ -0.05
CLN3-263ENST00000637871 RPL23P62829 140 aaKnown RBP14.71□□□□□ -0.05
CLN3-263ENST00000637871 MRGPRG-AS1Q2M3A8 158 aa14.71□□□□□ -0.05
CLN3-263ENST00000637871 SMUG1Q53HV7 270 aa14.71□□□□□ -0.05
CLN3-263ENST00000637871 FAM78BQ5VT40 261 aa14.71□□□□□ -0.05
CLN3-263ENST00000637871 OR1L6Q8NGR2 347 aa14.71□□□□□ -0.05
CLN3-263ENST00000637871 OR1P1Q8NH06 330 aa14.71□□□□□ -0.05
CLN3-263ENST00000637871 TRBV24-1A0A075B6N3 115 aa14.7□□□□□ -0.06
CLN3-263ENST00000637871 A0A1W2PPI3 338 aa14.7□□□□□ -0.06
CLN3-263ENST00000637871 IGLC7A0M8Q6 106 aa14.7□□□□□ -0.06
CLN3-263ENST00000637871 PPP1R2P9O14990 202 aa14.7□□□□□ -0.06
CLN3-263ENST00000637871 CRYGCP07315 174 aa14.7□□□□□ -0.06
CLN3-263ENST00000637871 S100PP25815 95 aa14.7□□□□□ -0.06
CLN3-263ENST00000637871 ADIRFQ15847 76 aa14.7□□□□□ -0.06
CLN3-263ENST00000637871 ZNF674Q2M3X9 581 aa14.7□□□□□ -0.06
CLN3-263ENST00000637871 MINOS1Q5TGZ0 78 aa14.7□□□□□ -0.06
CLN3-263ENST00000637871 MAPK1IP1LQ8NDC0 245 aa14.7□□□□□ -0.06
CLN3-263ENST00000637871 SEPSECSQ9HD40 501 aaKnown RBP14.7□□□□□ -0.06
CLN3-263ENST00000637871 METTL1Q9UBP6 276 aaKnown RBP14.7□□□□□ -0.06
CLN3-263ENST00000637871 MINOS1-NBL1R4GNA1 71 aa14.7□□□□□ -0.06
CLN3-263ENST00000637871 TCRBV4S1A1TA0A5B7 111 aa14.7□□□□□ -0.06
CLN3-263ENST00000637871 ODF3BA8MYP8 253 aa14.7□□□□□ -0.06
CLN3-263ENST00000637871 E7EUB6 86 aa14.7□□□□□ -0.06
CLN3-263ENST00000637871 BPIFB3P59826 476 aa14.7□□□□□ -0.06
CLN3-263ENST00000637871 TNXAQ16473 311 aa14.7□□□□□ -0.06
CLN3-263ENST00000637871 C11orf52Q96A22 123 aa14.7□□□□□ -0.06
CLN3-263ENST00000637871 OR5B12Q96R08 314 aa14.7□□□□□ -0.06
CLN3-263ENST00000637871 PIMREGQ9BSJ6 248 aa14.7□□□□□ -0.06
CLN3-263ENST00000637871 LY96Q9Y6Y9 160 aa14.7□□□□□ -0.06
CLN3-263ENST00000637871 FLNAP21333 2647 aaKnown RBP14.7□□□□□ -0.06
CLN3-263ENST00000637871 MAST4O15021 2626 aa14.69□□□□□ -0.06
CLN3-263ENST00000637871 MALRD1Q5VYJ5 2156 aa14.69□□□□□ -0.06
CLN3-263ENST00000637871 IGKV1OR2-108A0A075B7D4 117 aa14.69□□□□□ -0.06
CLN3-263ENST00000637871 IGHV3-72A0A0B4J1Y9 119 aa14.69□□□□□ -0.06
CLN3-263ENST00000637871 EIF3GO75821 320 aaKnown RBP eCLIP14.69□□□□□ -0.06
CLN3-263ENST00000637871 C8orf88P0DMB2 117 aa14.69□□□□□ -0.06
CLN3-263ENST00000637871 ARF6P62330 175 aa14.69□□□□□ -0.06
CLN3-263ENST00000637871 SAV1Q9H4B6 383 aaPredicted RBP14.69□□□□□ -0.06
CLN3-263ENST00000637871 DNAJC4Q9NNZ3 241 aa14.69□□□□□ -0.06
CLN3-263ENST00000637871 ELOA3CA0A087WX78 387 aaPredicted RBP14.68□□□□□ -0.06
CLN3-263ENST00000637871 IGHV4-61A0A0C4DH41 118 aa14.68□□□□□ -0.06
CLN3-263ENST00000637871 VWC2LB2RUY7 222 aa14.68□□□□□ -0.06
CLN3-263ENST00000637871 RNF223E7ERA6 249 aa14.68□□□□□ -0.06
CLN3-263ENST00000637871 RPS10P46783 165 aaKnown RBP14.68□□□□□ -0.06
CLN3-263ENST00000637871 PRSS57Q6UWY2 283 aa14.68□□□□□ -0.06
CLN3-263ENST00000637871 NPBQ8NG41 125 aa14.68□□□□□ -0.06
CLN3-263ENST00000637871 Q8WTZ3 238 aa14.68□□□□□ -0.06
CLN3-263ENST00000637871 H7BYZ3 331 aa14.67□□□□□ -0.06
CLN3-263ENST00000637871 GNB1P62873 340 aa14.67□□□□□ -0.06
CLN3-263ENST00000637871 C10orf55Q5SWW7 151 aa14.67□□□□□ -0.06
CLN3-263ENST00000637871 CIARTQ8N365 385 aaPredicted RBP14.67□□□□□ -0.06
CLN3-263ENST00000637871 TMEM116Q8NCL8 245 aa14.67□□□□□ -0.06
CLN3-263ENST00000637871 STXBP6Q8NFX7 210 aa14.67□□□□□ -0.06
CLN3-263ENST00000637871 ACY3Q96HD9 319 aa14.67□□□□□ -0.06
CLN3-263ENST00000637871 RITA1Q96K30 269 aa14.67□□□□□ -0.06
CLN3-263ENST00000637871 IMMP2LQ96T52 175 aa14.67□□□□□ -0.06
CLN3-263ENST00000637871 TRGV9Q99603 122 aa14.67□□□□□ -0.06
CLN3-263ENST00000637871 SLC25A33Q9BSK2 321 aa14.67□□□□□ -0.06
CLN3-263ENST00000637871 ZANQ9Y493 2812 aa14.67□□□□□ -0.06
CLN3-263ENST00000637871 A0A1W2PRE2 83 aa14.66□□□□□ -0.06
CLN3-263ENST00000637871 MOSP00540 346 aa14.66□□□□□ -0.06
CLN3-263ENST00000637871 DEFA4P12838 97 aa14.66□□□□□ -0.06
CLN3-263ENST00000637871 SRP14P37108 136 aaKnown RBP14.66□□□□□ -0.06
CLN3-263ENST00000637871 ATP5G3P48201 142 aa14.66□□□□□ -0.06
CLN3-263ENST00000637871 UBE2G2P60604 165 aa14.66□□□□□ -0.06
CLN3-263ENST00000637871 OR2T6Q8NHC8 308 aa14.66□□□□□ -0.06
CLN3-263ENST00000637871 NPIPB3Q92617 1050 aa14.66□□□□□ -0.06
CLN3-263ENST00000637871 FAM210BQ96KR6 192 aa14.66□□□□□ -0.06
CLN3-263ENST00000637871 FNDC4Q9H6D8 234 aaPredicted RBP14.66□□□□□ -0.06
CLN3-263ENST00000637871 F11RQ9Y624 299 aaKnown RBP14.66□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms