RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 KNCNA6PVL3 124 aa14.04□□□□□ -0.16
CLN3-262ENST00000637699 ZNF182P17025 639 aaPredicted RBP14.04□□□□□ -0.16
CLN3-262ENST00000637699 C4BPBP20851 252 aa14.04□□□□□ -0.16
CLN3-262ENST00000637699 NPBWR1P48145 328 aa14.04□□□□□ -0.16
CLN3-262ENST00000637699 HSPE1P61604 102 aaKnown RBP14.04□□□□□ -0.16
CLN3-262ENST00000637699 SPINK9Q5DT21 86 aa14.04□□□□□ -0.16
CLN3-262ENST00000637699 STXBP6Q8NFX7 210 aa14.04□□□□□ -0.16
CLN3-262ENST00000637699 TMEM231Q9H6L2 316 aa14.04□□□□□ -0.16
CLN3-262ENST00000637699 CLEC5AQ9NY25 188 aa14.04□□□□□ -0.16
CLN3-262ENST00000637699 X6R8D5 127 aa14.04□□□□□ -0.16
CLN3-262ENST00000637699 PKD1P98161 4303 aa14.04□□□□□ -0.16
CLN3-262ENST00000637699 FAM25AB3EWG3 89 aa14.03□□□□□ -0.16
CLN3-262ENST00000637699 FAM25CB3EWG5 89 aa14.03□□□□□ -0.16
CLN3-262ENST00000637699 FAM25GB3EWG6 89 aa14.03□□□□□ -0.16
CLN3-262ENST00000637699 IGKV1-39P01597 117 aa14.03□□□□□ -0.16
CLN3-262ENST00000637699 IGKV1D-39P04432 117 aa14.03□□□□□ -0.16
CLN3-262ENST00000637699 MED14OSP0DP75 135 aa14.03□□□□□ -0.16
CLN3-262ENST00000637699 TMEM41BQ5BJD5 291 aa14.03□□□□□ -0.16
CLN3-262ENST00000637699 MZT2AQ6P582 158 aa14.03□□□□□ -0.16
CLN3-262ENST00000637699 MORN3Q6PF18 240 aaPredicted RBP14.03□□□□□ -0.16
CLN3-262ENST00000637699 TBC1D26Q86UD7 250 aa14.03□□□□□ -0.16
CLN3-262ENST00000637699 RNF126Q9BV68 326 aa14.03□□□□□ -0.16
CLN3-262ENST00000637699 ZNF705EA8MWA4 302 aaPredicted RBP14.02□□□□□ -0.17
CLN3-262ENST00000637699 TMEM50AO95807 157 aa14.02□□□□□ -0.17
CLN3-262ENST00000637699 ZNF688P0C7X2 276 aa14.02□□□□□ -0.17
CLN3-262ENST00000637699 SPP1P10451 314 aa14.02□□□□□ -0.17
CLN3-262ENST00000637699 NPPCP23582 126 aa14.02□□□□□ -0.17
CLN3-262ENST00000637699 S100GP29377 79 aa14.02□□□□□ -0.17
CLN3-262ENST00000637699 RNASE12Q5GAN4 147 aaKnown RBP14.02□□□□□ -0.17
CLN3-262ENST00000637699 PVRIGQ6DKI7 326 aa14.02□□□□□ -0.17
CLN3-262ENST00000637699 ZNF767PQ75MW2 155 aa14.02□□□□□ -0.17
CLN3-262ENST00000637699 GPR141Q7Z602 305 aa14.02□□□□□ -0.17
CLN3-262ENST00000637699 AP3S1Q92572 193 aa14.02□□□□□ -0.17
CLN3-262ENST00000637699 MRGPRFQ96AM1 343 aa14.02□□□□□ -0.17
CLN3-262ENST00000637699 ABCA13Q86UQ4 5058 aa14.02□□□□□ -0.17
CLN3-262ENST00000637699 PRSS29PA6NIE9 313 aa14.01□□□□□ -0.17
CLN3-262ENST00000637699 K7EQG2 157 aa14.01□□□□□ -0.17
CLN3-262ENST00000637699 M0R2N4 97 aa14.01□□□□□ -0.17
CLN3-262ENST00000637699 RCVRNP35243 200 aa14.01□□□□□ -0.17
CLN3-262ENST00000637699 SNCAP37840 140 aa14.01□□□□□ -0.17
CLN3-262ENST00000637699 TSPAN5P62079 268 aa14.01□□□□□ -0.17
CLN3-262ENST00000637699 IZUMO4Q1ZYL8 232 aa14.01□□□□□ -0.17
CLN3-262ENST00000637699 ACTL10Q5JWF8 245 aa14.01□□□□□ -0.17
CLN3-262ENST00000637699 FAM212BQ9NTI7 297 aaPredicted RBP14.01□□□□□ -0.17
CLN3-262ENST00000637699 KLK11Q9UBX7 282 aa14.01□□□□□ -0.17
CLN3-262ENST00000637699 TBC1D24Q9ULP9 559 aa14.01□□□□□ -0.17
CLN3-262ENST00000637699 CELA1Q9UNI1 258 aa14.01□□□□□ -0.17
CLN3-262ENST00000637699 DEFB131BA0A096LNP1 70 aa14□□□□□ -0.17
CLN3-262ENST00000637699 A0A1W2PS18 150 aa14□□□□□ -0.17
CLN3-262ENST00000637699 M0QYG6 137 aa14□□□□□ -0.17
CLN3-262ENST00000637699 PPP5CP53041 499 aa14□□□□□ -0.17
CLN3-262ENST00000637699 SPCS2Q15005 226 aa14□□□□□ -0.17
CLN3-262ENST00000637699 LPCAT3Q6P1A2 487 aa14□□□□□ -0.17
CLN3-262ENST00000637699 OR52I2Q8NH67 350 aa14□□□□□ -0.17
CLN3-262ENST00000637699 GRAMD2BQ96HH9 432 aa14□□□□□ -0.17
CLN3-262ENST00000637699 ABHD1Q96SE0 405 aa14□□□□□ -0.17
CLN3-262ENST00000637699 MIXL1Q9H2W2 232 aa14□□□□□ -0.17
CLN3-262ENST00000637699 EXTL2Q9UBQ6 330 aa14□□□□□ -0.17
CLN3-262ENST00000637699 MUC4Q99102 2169 aa14□□□□□ -0.17
CLN3-262ENST00000637699 P2RY1P47900 373 aa13.99□□□□□ -0.17
CLN3-262ENST00000637699 C12orf74Q32Q52 190 aa13.99□□□□□ -0.17
CLN3-262ENST00000637699 POM121L12Q8N7R1 296 aa13.99□□□□□ -0.17
CLN3-262ENST00000637699 CSNK1G2-AS1Q8NCQ2 148 aa13.99□□□□□ -0.17
CLN3-262ENST00000637699 METTL26Q96S19 204 aa13.99□□□□□ -0.17
CLN3-262ENST00000637699 RTL8CO15255 209 aa13.98□□□□□ -0.17
CLN3-262ENST00000637699 AMBPP02760 352 aa13.98□□□□□ -0.17
CLN3-262ENST00000637699 P0DMU3 169 aa13.98□□□□□ -0.17
CLN3-262ENST00000637699 FAM231AP0DMU4 169 aa13.98□□□□□ -0.17
CLN3-262ENST00000637699 FAM231CP0DMU5 169 aa13.98□□□□□ -0.17
CLN3-262ENST00000637699 TMEM230Q96A57 120 aa13.98□□□□□ -0.17
CLN3-262ENST00000637699 SCRT1Q9BWW7 348 aa13.98□□□□□ -0.17
CLN3-262ENST00000637699 MRPL36Q9P0J6 103 aaKnown RBP13.98□□□□□ -0.17
CLN3-262ENST00000637699 CTDSP2O14595 271 aa13.97□□□□□ -0.17
CLN3-262ENST00000637699 CRYBB3P26998 211 aa13.97□□□□□ -0.17
CLN3-262ENST00000637699 UCP3P55916 312 aa13.97□□□□□ -0.17
CLN3-262ENST00000637699 MLANAQ16655 118 aa13.97□□□□□ -0.17
CLN3-262ENST00000637699 CLVS1Q8IUQ0 354 aaPredicted RBP13.97□□□□□ -0.17
CLN3-262ENST00000637699 SLC35G3Q8N808 338 aa13.97□□□□□ -0.17
CLN3-262ENST00000637699 DCANP1Q8TF63 244 aa13.97□□□□□ -0.17
CLN3-262ENST00000637699 MTFP1Q9UDX5 166 aa13.97□□□□□ -0.17
CLN3-262ENST00000637699 IFNA17P01571 189 aa13.96□□□□□ -0.17
CLN3-262ENST00000637699 CD3DP04234 171 aa13.96□□□□□ -0.17
CLN3-262ENST00000637699 NARS2Q96I59 477 aaKnown RBP13.96□□□□□ -0.17
CLN3-262ENST00000637699 RAB40CQ96S21 281 aa13.96□□□□□ -0.17
CLN3-262ENST00000637699 NDUFAF3Q9BU61 184 aa13.96□□□□□ -0.17
CLN3-262ENST00000637699 CLN5O75503 358 aa13.95□□□□□ -0.18
CLN3-262ENST00000637699 RNASE2P10153 161 aaKnown RBP13.95□□□□□ -0.18
CLN3-262ENST00000637699 ETV6P41212 452 aa13.95□□□□□ -0.18
CLN3-262ENST00000637699 SUB1P53999 127 aaKnown RBP eCLIP13.95□□□□□ -0.18
CLN3-262ENST00000637699 DHRS2Q13268 280 aa13.95□□□□□ -0.18
CLN3-262ENST00000637699 PSMG4Q5JS54 123 aa13.95□□□□□ -0.18
CLN3-262ENST00000637699 OR4D10Q8NGI6 311 aa13.95□□□□□ -0.18
CLN3-262ENST00000637699 FNDC4Q9H6D8 234 aaPredicted RBP13.95□□□□□ -0.18
CLN3-262ENST00000637699 A0A0B4J293 547 aa13.94□□□□□ -0.18
CLN3-262ENST00000637699 CORTO00230 105 aa13.94□□□□□ -0.18
CLN3-262ENST00000637699 RGS5O15539 181 aa13.94□□□□□ -0.18
CLN3-262ENST00000637699 IGKV1-5P01602 117 aa13.94□□□□□ -0.18
CLN3-262ENST00000637699 OPRK1P41145 380 aa13.94□□□□□ -0.18
CLN3-262ENST00000637699 TIGITQ495A1 244 aa13.94□□□□□ -0.18
CLN3-262ENST00000637699 RNASE10Q5GAN6 216 aaKnown RBP13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms