RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 TMED4Q7Z7H5 227 aa8.72□□□□□ -1.01
CLN3-257ENST00000637110 IL17DQ8TAD2 202 aa8.72□□□□□ -1.01
CLN3-257ENST00000637110 LHFPL5Q8TAF8 219 aa8.72□□□□□ -1.01
CLN3-257ENST00000637110 SOSTQ9BQB4 213 aa8.72□□□□□ -1.01
CLN3-257ENST00000637110 PRR13Q9NZ81 148 aa8.72□□□□□ -1.01
CLN3-257ENST00000637110 C15orf62A8K5M9 175 aa8.71□□□□□ -1.02
CLN3-257ENST00000637110 SCGB2A1O75556 95 aa8.71□□□□□ -1.02
CLN3-257ENST00000637110 RNASE2P10153 161 aaKnown RBP8.71□□□□□ -1.02
CLN3-257ENST00000637110 SPANXN2Q5MJ10 180 aa8.71□□□□□ -1.02
CLN3-257ENST00000637110 TMEM116Q8NCL8 245 aa8.71□□□□□ -1.02
CLN3-257ENST00000637110 GINS3Q9BRX5 216 aa8.71□□□□□ -1.02
CLN3-257ENST00000637110 UBQLN2Q9UHD9 624 aa8.71□□□□□ -1.02
CLN3-257ENST00000637110 FRAS1Q86XX4 4008 aa8.7□□□□□ -1.02
CLN3-257ENST00000637110 IGKV3-7A0A075B6H7 116 aa8.7□□□□□ -1.02
CLN3-257ENST00000637110 IGHV3OR16-13A0A075B7E8 117 aa8.7□□□□□ -1.02
CLN3-257ENST00000637110 TRAV14DV4A0A0A6YYC5 116 aa8.7□□□□□ -1.02
CLN3-257ENST00000637110 IGHV3-74A0A0B4J1X5 117 aa8.7□□□□□ -1.02
CLN3-257ENST00000637110 IGHV7-4-1A0A0J9YVY3 117 aa8.7□□□□□ -1.02
CLN3-257ENST00000637110 INS-IGF2F8WCM5 200 aa8.7□□□□□ -1.02
CLN3-257ENST00000637110 SULT1A3P0DMM9 295 aa8.7□□□□□ -1.02
CLN3-257ENST00000637110 SULT1A4P0DMN0 295 aa8.7□□□□□ -1.02
CLN3-257ENST00000637110 FCGR2BP31994 310 aaPredicted RBP8.7□□□□□ -1.02
CLN3-257ENST00000637110 HTR2BP41595 481 aa8.7□□□□□ -1.02
CLN3-257ENST00000637110 TFPI2P48307 235 aa8.7□□□□□ -1.02
CLN3-257ENST00000637110 KLF9Q13886 244 aaPredicted RBP8.7□□□□□ -1.02
CLN3-257ENST00000637110 TMEM187Q14656 261 aa8.7□□□□□ -1.02
CLN3-257ENST00000637110 LGI3Q8N145 548 aa8.7□□□□□ -1.02
CLN3-257ENST00000637110 OR52E5Q8NH55 327 aa8.7□□□□□ -1.02
CLN3-257ENST00000637110 TMEM230Q96A57 120 aa8.7□□□□□ -1.02
CLN3-257ENST00000637110 SPAG8Q99932 426 aaPredicted RBP8.7□□□□□ -1.02
CLN3-257ENST00000637110 RHPN1-AS1Q9BWJ2 59 aa8.7□□□□□ -1.02
CLN3-257ENST00000637110 HIPK2Q9H2X6 1198 aa8.7□□□□□ -1.02
CLN3-257ENST00000637110 RETNQ9HD89 108 aa8.7□□□□□ -1.02
CLN3-257ENST00000637110 SMPXQ9UHP9 88 aa8.7□□□□□ -1.02
CLN3-257ENST00000637110 TMEM56-RWDD3S4R434 201 aa8.7□□□□□ -1.02
CLN3-257ENST00000637110 LOC102724200A0A096LPH7 203 aaPredicted RBP8.69□□□□□ -1.02
CLN3-257ENST00000637110 RPS10-NUDT3A0A1W2PQS6 291 aa8.69□□□□□ -1.02
CLN3-257ENST00000637110 OR4C46A6NHA9 309 aa8.69□□□□□ -1.02
CLN3-257ENST00000637110 CHEK1O14757 476 aa8.69□□□□□ -1.02
CLN3-257ENST00000637110 TSPAN4O14817 238 aa8.69□□□□□ -1.02
CLN3-257ENST00000637110 TMEM50AO95807 157 aa8.69□□□□□ -1.02
CLN3-257ENST00000637110 VAMP1P23763 118 aa8.69□□□□□ -1.02
CLN3-257ENST00000637110 BMI1P35226 326 aa8.69□□□□□ -1.02
CLN3-257ENST00000637110 RPL11P62913 178 aaKnown RBP8.69□□□□□ -1.02
CLN3-257ENST00000637110 SRPXP78539 464 aa8.69□□□□□ -1.02
CLN3-257ENST00000637110 MLANAQ16655 118 aa8.69□□□□□ -1.02
CLN3-257ENST00000637110 TOMM20LQ6UXN7 152 aa8.69□□□□□ -1.02
CLN3-257ENST00000637110 ZNF600Q6ZNG1 722 aa8.69□□□□□ -1.02
CLN3-257ENST00000637110 SLC24A4Q8NFF2 622 aa8.69□□□□□ -1.02
CLN3-257ENST00000637110 IL22RA2Q969J5 263 aa8.69□□□□□ -1.02
CLN3-257ENST00000637110 GALNT14Q96FL9 552 aa8.69□□□□□ -1.02
CLN3-257ENST00000637110 FAM110AQ9BQ89 295 aa8.69□□□□□ -1.02
CLN3-257ENST00000637110 GGTLC1Q9BX51 225 aa8.69□□□□□ -1.02
CLN3-257ENST00000637110 CACFD1Q9UGQ2 172 aa8.69□□□□□ -1.02
CLN3-257ENST00000637110 V9GYH0 126 aa8.69□□□□□ -1.02
CLN3-257ENST00000637110 RYR1P21817 5038 aa8.69□□□□□ -1.02
CLN3-257ENST00000637110 A0A0B4J2A0 478 aa8.68□□□□□ -1.02
CLN3-257ENST00000637110 IGHV3-66A0A0C4DH42 116 aa8.68□□□□□ -1.02
CLN3-257ENST00000637110 ZNF701M0R085 212 aaPredicted RBP8.68□□□□□ -1.02
CLN3-257ENST00000637110 CLN5O75503 358 aa8.68□□□□□ -1.02
CLN3-257ENST00000637110 IFNA10P01566 189 aa8.68□□□□□ -1.02
CLN3-257ENST00000637110 CCR6P51684 374 aa8.68□□□□□ -1.02
CLN3-257ENST00000637110 ZNF79Q15937 498 aa8.68□□□□□ -1.02
CLN3-257ENST00000637110 TRIQKQ629K1 86 aa8.68□□□□□ -1.02
CLN3-257ENST00000637110 LINC00322Q6ZN03 302 aaPredicted RBP8.68□□□□□ -1.02
CLN3-257ENST00000637110 LYZL2Q7Z4W2 148 aa8.68□□□□□ -1.02
CLN3-257ENST00000637110 CCDC190Q86UF4 302 aa8.68□□□□□ -1.02
CLN3-257ENST00000637110 GBGT1Q8N5D6 347 aa8.68□□□□□ -1.02
CLN3-257ENST00000637110 OR1S1Q8NH92 325 aa8.68□□□□□ -1.02
CLN3-257ENST00000637110 TRIM63Q969Q1 353 aa8.68□□□□□ -1.02
CLN3-257ENST00000637110 RNF2Q99496 336 aa8.68□□□□□ -1.02
CLN3-257ENST00000637110 RBM38Q9H0Z9 239 aaKnown RBP8.68□□□□□ -1.02
CLN3-257ENST00000637110 SHPKQ9UHJ6 478 aa8.68□□□□□ -1.02
CLN3-257ENST00000637110 PUS1Q9Y606 427 aaKnown RBP eCLIP8.68□□□□□ -1.02
CLN3-257ENST00000637110 TRAV30A0A087WSZ9 112 aa8.67□□□□□ -1.02
CLN3-257ENST00000637110 PIGBOS1A0A0B4J2F0 54 aa8.67□□□□□ -1.02
CLN3-257ENST00000637110 LINC00854A0A1B0GVQ3 168 aa8.67□□□□□ -1.02
CLN3-257ENST00000637110 NPY1RP25929 384 aa8.67□□□□□ -1.02
CLN3-257ENST00000637110 PAFAH1B2P68402 229 aa8.67□□□□□ -1.02
CLN3-257ENST00000637110 SMCO1Q147U7 214 aa8.67□□□□□ -1.02
CLN3-257ENST00000637110 NOXA1Q86UR1 476 aa8.67□□□□□ -1.02
CLN3-257ENST00000637110 WFDC3Q8IUB2 231 aa8.67□□□□□ -1.02
CLN3-257ENST00000637110 OR4X1Q8NH49 305 aa8.67□□□□□ -1.02
CLN3-257ENST00000637110 NARS2Q96I59 477 aaKnown RBP8.67□□□□□ -1.02
CLN3-257ENST00000637110 OR10C1Q96KK4 312 aa8.67□□□□□ -1.02
CLN3-257ENST00000637110 SLC25A21Q9BQT8 299 aaPredicted RBP8.67□□□□□ -1.02
CLN3-257ENST00000637110 FNDC4Q9H6D8 234 aaPredicted RBP8.67□□□□□ -1.02
CLN3-257ENST00000637110 DNASE2O00115 360 aaPredicted RBP8.66□□□□□ -1.02
CLN3-257ENST00000637110 NPPCP23582 126 aa8.66□□□□□ -1.02
CLN3-257ENST00000637110 CMC4P56277 68 aaPredicted RBP8.66□□□□□ -1.02
CLN3-257ENST00000637110 SUPT4H1P63272 117 aaKnown RBP8.66□□□□□ -1.02
CLN3-257ENST00000637110 TIGITQ495A1 244 aa8.66□□□□□ -1.02
CLN3-257ENST00000637110 AARDQ4LEZ3 155 aa8.66□□□□□ -1.02
CLN3-257ENST00000637110 C2orf83Q53S99 150 aa8.66□□□□□ -1.02
CLN3-257ENST00000637110 TMEM128Q5BJH2 165 aa8.66□□□□□ -1.02
CLN3-257ENST00000637110 PVRIGQ6DKI7 326 aa8.66□□□□□ -1.02
CLN3-257ENST00000637110 ETFRF1Q6IPR1 90 aa8.66□□□□□ -1.02
CLN3-257ENST00000637110 TCF24Q7RTU0 167 aa8.66□□□□□ -1.02
CLN3-257ENST00000637110 METTL26Q96S19 204 aa8.66□□□□□ -1.02
CLN3-257ENST00000637110 RBKSQ9H477 322 aa8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms