RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 IGLV11-55A0A075B6I3 123 aa15.77■□□□□ 0.11
CLN3-250ENST00000636839 A0A1B0GV50 99 aa15.77■□□□□ 0.11
CLN3-250ENST00000636839 RAB2AP61019 212 aa15.77■□□□□ 0.11
CLN3-250ENST00000636839 PXDC1Q5TGL8 231 aa15.77■□□□□ 0.11
CLN3-250ENST00000636839 OR5R1Q8NH85 324 aa15.77■□□□□ 0.11
CLN3-250ENST00000636839 SLC35E1Q96K37 410 aa15.77■□□□□ 0.11
CLN3-250ENST00000636839 IGKV1D-37A0A075B6S9 117 aa15.76■□□□□ 0.11
CLN3-250ENST00000636839 OR2J3O76001 311 aa15.76■□□□□ 0.11
CLN3-250ENST00000636839 NDUFB8O95169 186 aa15.76■□□□□ 0.11
CLN3-250ENST00000636839 OR10J1P30954 320 aa15.76■□□□□ 0.11
CLN3-250ENST00000636839 FFAR4Q5NUL3 377 aa15.76■□□□□ 0.11
CLN3-250ENST00000636839 AKR1C8PQ5T2L2 129 aa15.76■□□□□ 0.11
CLN3-250ENST00000636839 ZNF709Q8N972 641 aa15.76■□□□□ 0.11
CLN3-250ENST00000636839 HRH4Q9H3N8 390 aa15.76■□□□□ 0.11
CLN3-250ENST00000636839 HIVEP1P15822 2718 aa15.76■□□□□ 0.11
CLN3-250ENST00000636839 BTBD17A6NE02 478 aa15.75■□□□□ 0.11
CLN3-250ENST00000636839 FNDC10F2Z333 226 aa15.75■□□□□ 0.11
CLN3-250ENST00000636839 M0QZK8 103 aa15.75■□□□□ 0.11
CLN3-250ENST00000636839 IGHG2P01859 326 aa15.75■□□□□ 0.11
CLN3-250ENST00000636839 ZNF90Q03938 601 aa15.75■□□□□ 0.11
CLN3-250ENST00000636839 ZNF616Q08AN1 781 aa15.75■□□□□ 0.11
CLN3-250ENST00000636839 SSX7Q7RTT5 188 aa15.75■□□□□ 0.11
CLN3-250ENST00000636839 SLC35E3Q7Z769 313 aa15.75■□□□□ 0.11
CLN3-250ENST00000636839 TIMM9Q9Y5J7 89 aa15.75■□□□□ 0.11
CLN3-250ENST00000636839 LINC00862A6NCI5 91 aa15.75■□□□□ 0.11
CLN3-250ENST00000636839 YIF1AO95070 293 aa15.75■□□□□ 0.11
CLN3-250ENST00000636839 IGHV3-23P01764 117 aa15.75■□□□□ 0.11
CLN3-250ENST00000636839 AKIRIN2Q53H80 203 aa15.75■□□□□ 0.11
CLN3-250ENST00000636839 C16orf82Q7Z2V1 217 aa15.75■□□□□ 0.11
CLN3-250ENST00000636839 MS4A10Q96PG2 267 aa15.75■□□□□ 0.11
CLN3-250ENST00000636839 ZNF355PQ9NSJ1 428 aa15.75■□□□□ 0.11
CLN3-250ENST00000636839 SETXQ7Z333 2677 aaKnown RBP15.74■□□□□ 0.11
CLN3-250ENST00000636839 TRAV41A0A0B4J266 112 aa15.74■□□□□ 0.11
CLN3-250ENST00000636839 MFSD2BA6NFX1 497 aa15.74■□□□□ 0.11
CLN3-250ENST00000636839 ZNF726P1Q15940 193 aa15.74■□□□□ 0.11
CLN3-250ENST00000636839 C19orf54Q5BKX5 351 aa15.74■□□□□ 0.11
CLN3-250ENST00000636839 BPIFCQ8NFQ6 507 aa15.74■□□□□ 0.11
CLN3-250ENST00000636839 FAM110DQ8TAY7 271 aaPredicted RBP15.74■□□□□ 0.11
CLN3-250ENST00000636839 PXMP4Q9Y6I8 212 aa15.74■□□□□ 0.11
CLN3-250ENST00000636839 CYSRT1A8MQ03 144 aa15.73■□□□□ 0.11
CLN3-250ENST00000636839 CORTO00230 105 aa15.73■□□□□ 0.11
CLN3-250ENST00000636839 MPDU1O75352 247 aa15.73■□□□□ 0.11
CLN3-250ENST00000636839 LINC00869P0C866 280 aa15.73■□□□□ 0.11
CLN3-250ENST00000636839 SERF2P84101 59 aa15.73■□□□□ 0.11
CLN3-250ENST00000636839 RPP25LQ8N5L8 163 aaKnown RBP15.73■□□□□ 0.11
CLN3-250ENST00000636839 STPG3Q8N7X2 389 aa15.73■□□□□ 0.11
CLN3-250ENST00000636839 SLC45A2Q9UMX9 530 aa15.73■□□□□ 0.11
CLN3-250ENST00000636839 UMAD1C9J7I0 102 aa15.73■□□□□ 0.11
CLN3-250ENST00000636839 COMMD7Q86VX2 200 aa15.73■□□□□ 0.11
CLN3-250ENST00000636839 SAT2Q96F10 170 aaPredicted RBP15.73■□□□□ 0.11
CLN3-250ENST00000636839 C17orf112F2Z3M2 114 aa15.72■□□□□ 0.11
CLN3-250ENST00000636839 HMGB3O15347 200 aaKnown RBP15.72■□□□□ 0.11
CLN3-250ENST00000636839 IGF1P05019 195 aa15.72■□□□□ 0.11
CLN3-250ENST00000636839 ETFRF1Q6IPR1 90 aa15.72■□□□□ 0.11
CLN3-250ENST00000636839 TMEM116Q8NCL8 245 aa15.72■□□□□ 0.11
CLN3-250ENST00000636839 ESM1Q9NQ30 184 aa15.72■□□□□ 0.11
CLN3-250ENST00000636839 FBXL7Q9UJT9 491 aa15.72■□□□□ 0.11
CLN3-250ENST00000636839 ZFP92A6NM28 416 aa15.72■□□□□ 0.11
CLN3-250ENST00000636839 TRIM77I1YAP6 450 aa15.72■□□□□ 0.11
CLN3-250ENST00000636839 RAB5CP51148 216 aa15.72■□□□□ 0.11
CLN3-250ENST00000636839 B2MP61769 119 aa15.72■□□□□ 0.11
CLN3-250ENST00000636839 CCL20P78556 96 aa15.72■□□□□ 0.11
CLN3-250ENST00000636839 TMEM41BQ5BJD5 291 aa15.72■□□□□ 0.11
CLN3-250ENST00000636839 TEX29Q8N6K0 151 aa15.72■□□□□ 0.11
CLN3-250ENST00000636839 LRRC20Q8TCA0 184 aa15.72■□□□□ 0.11
CLN3-250ENST00000636839 CITED4Q96RK1 184 aa15.72■□□□□ 0.11
CLN3-250ENST00000636839 HIVEP2P31629 2446 aa15.71■□□□□ 0.11
CLN3-250ENST00000636839 S100A1P23297 94 aa15.71■□□□□ 0.11
CLN3-250ENST00000636839 PRR20EP86478 221 aa15.71■□□□□ 0.11
CLN3-250ENST00000636839 PRR20CP86479 221 aa15.71■□□□□ 0.11
CLN3-250ENST00000636839 PRR20DP86480 221 aa15.71■□□□□ 0.11
CLN3-250ENST00000636839 PRR20BP86481 221 aa15.71■□□□□ 0.11
CLN3-250ENST00000636839 PRR20AP86496 221 aa15.71■□□□□ 0.11
CLN3-250ENST00000636839 NDUFA5Q16718 116 aa15.71■□□□□ 0.11
CLN3-250ENST00000636839 THAP8Q8NA92 274 aa15.71■□□□□ 0.11
CLN3-250ENST00000636839 OR10G4Q8NGN3 311 aa15.71■□□□□ 0.11
CLN3-250ENST00000636839 OR10G9Q8NGN4 311 aa15.71■□□□□ 0.11
CLN3-250ENST00000636839 OR10G7Q8NGN6 311 aa15.71■□□□□ 0.11
CLN3-250ENST00000636839 RCC1LQ96I51 464 aaKnown RBP15.71■□□□□ 0.11
CLN3-250ENST00000636839 CRIP2P52943 208 aaPredicted RBP15.7■□□□□ 0.1
CLN3-250ENST00000636839 RHOGP84095 191 aa15.7■□□□□ 0.1
CLN3-250ENST00000636839 RAB31Q13636 194 aa15.7■□□□□ 0.1
CLN3-250ENST00000636839 OR1L6Q8NGR2 347 aa15.7■□□□□ 0.1
CLN3-250ENST00000636839 SLC39A9Q9NUM3 307 aa15.7■□□□□ 0.1
CLN3-250ENST00000636839 F8W735 103 aaPredicted RBP15.7■□□□□ 0.1
CLN3-250ENST00000636839 TSPAN15O95858 294 aa15.7■□□□□ 0.1
CLN3-250ENST00000636839 CD99P14209 185 aa15.7■□□□□ 0.1
CLN3-250ENST00000636839 RPL29P47914 159 aaKnown RBP15.7■□□□□ 0.1
CLN3-250ENST00000636839 BLOC1S1P78537 153 aa15.7■□□□□ 0.1
CLN3-250ENST00000636839 LCNL1Q6ZST4 164 aa15.7■□□□□ 0.1
CLN3-250ENST00000636839 CYP2G1PQ6ZSU1 146 aa15.7■□□□□ 0.1
CLN3-250ENST00000636839 SFT2D1Q8WV19 159 aa15.7■□□□□ 0.1
CLN3-250ENST00000636839 SLC25A22Q9H936 323 aa15.7■□□□□ 0.1
CLN3-250ENST00000636839 DNAJC9-AS1A6NH13 148 aa15.69■□□□□ 0.1
CLN3-250ENST00000636839 HNF1AP20823 631 aa15.69■□□□□ 0.1
CLN3-250ENST00000636839 PPIFP30405 207 aaKnown RBP15.69■□□□□ 0.1
CLN3-250ENST00000636839 FGF8P55075 233 aaPredicted RBP15.69■□□□□ 0.1
CLN3-250ENST00000636839 C15orf32Q32M92 178 aa15.69■□□□□ 0.1
CLN3-250ENST00000636839 FAM122CQ6P4D5 195 aa15.69■□□□□ 0.1
CLN3-250ENST00000636839 SPSB3Q6PJ21 355 aa15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms