RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 GIG44P09565 113 aaPredicted RBP11.76□□□□□ -0.53
CLN3-246ENST00000636228 NPPCP23582 126 aa11.76□□□□□ -0.53
CLN3-246ENST00000636228 STHQ8IWL8 128 aa11.76□□□□□ -0.53
CLN3-246ENST00000636228 STXBP6Q8NFX7 210 aa11.76□□□□□ -0.53
CLN3-246ENST00000636228 C2CD4CQ8TF44 421 aa11.76□□□□□ -0.53
CLN3-246ENST00000636228 A0A0G2JRQ6 117 aa11.75□□□□□ -0.53
CLN3-246ENST00000636228 C3orf85A0A1B0GTC6 90 aa11.75□□□□□ -0.53
CLN3-246ENST00000636228 RBMY1A1P0DJD3 496 aaKnown RBP11.75□□□□□ -0.53
CLN3-246ENST00000636228 RBMY1CP0DJD4 496 aa11.75□□□□□ -0.53
CLN3-246ENST00000636228 RPL5P46777 297 aaKnown RBP11.75□□□□□ -0.53
CLN3-246ENST00000636228 HOXA1P49639 335 aaPredicted RBP11.75□□□□□ -0.53
CLN3-246ENST00000636228 RND3P61587 244 aa11.75□□□□□ -0.53
CLN3-246ENST00000636228 RBMY1FQ15415 496 aaKnown RBP11.75□□□□□ -0.53
CLN3-246ENST00000636228 TRIM16LQ309B1 348 aa11.75□□□□□ -0.53
CLN3-246ENST00000636228 PVRIGQ6DKI7 326 aa11.75□□□□□ -0.53
CLN3-246ENST00000636228 Q8NAQ8 132 aa11.75□□□□□ -0.53
CLN3-246ENST00000636228 OR52I2Q8NH67 350 aa11.75□□□□□ -0.53
CLN3-246ENST00000636228 TMEM230Q96A57 120 aa11.75□□□□□ -0.53
CLN3-246ENST00000636228 IGHV4-28A0A0C4DH34 117 aa11.74□□□□□ -0.53
CLN3-246ENST00000636228 K7EQG2 157 aa11.74□□□□□ -0.53
CLN3-246ENST00000636228 CLN5O75503 358 aa11.74□□□□□ -0.53
CLN3-246ENST00000636228 ZNF688P0C7X2 276 aa11.74□□□□□ -0.53
CLN3-246ENST00000636228 OPRK1P41145 380 aa11.74□□□□□ -0.53
CLN3-246ENST00000636228 SUB1P53999 127 aaKnown RBP eCLIP11.74□□□□□ -0.53
CLN3-246ENST00000636228 TIGITQ495A1 244 aa11.74□□□□□ -0.53
CLN3-246ENST00000636228 RNASE10Q5GAN6 216 aaKnown RBP11.74□□□□□ -0.53
CLN3-246ENST00000636228 Q6ZRM9 215 aa11.74□□□□□ -0.53
CLN3-246ENST00000636228 LHFPL1Q86WI0 220 aa11.74□□□□□ -0.53
CLN3-246ENST00000636228 OR4D10Q8NGI6 311 aa11.74□□□□□ -0.53
CLN3-246ENST00000636228 PDCD10Q9BUL8 212 aa11.74□□□□□ -0.53
CLN3-246ENST00000636228 TRAV2A0A0B4J234 112 aa11.73□□□□□ -0.53
CLN3-246ENST00000636228 INS-IGF2F8WCM5 200 aa11.73□□□□□ -0.53
CLN3-246ENST00000636228 C4BPBP20851 252 aa11.73□□□□□ -0.53
CLN3-246ENST00000636228 P2RY1P47900 373 aa11.73□□□□□ -0.53
CLN3-246ENST00000636228 GPR141Q7Z602 305 aa11.73□□□□□ -0.53
CLN3-246ENST00000636228 TRPT1Q86TN4 253 aaKnown RBP11.73□□□□□ -0.53
CLN3-246ENST00000636228 ZNF486Q96H40 463 aaPredicted RBP11.73□□□□□ -0.53
CLN3-246ENST00000636228 METTL26Q96S19 204 aa11.73□□□□□ -0.53
CLN3-246ENST00000636228 TMEM231Q9H6L2 316 aa11.73□□□□□ -0.53
CLN3-246ENST00000636228 ENY2Q9NPA8 101 aa11.73□□□□□ -0.53
CLN3-246ENST00000636228 CLEC5AQ9NY25 188 aa11.73□□□□□ -0.53
CLN3-246ENST00000636228 COPZ2Q9P299 210 aa11.73□□□□□ -0.53
CLN3-246ENST00000636228 APLNQ9ULZ1 77 aa11.73□□□□□ -0.53
CLN3-246ENST00000636228 A0A1W2PS18 150 aa11.72□□□□□ -0.53
CLN3-246ENST00000636228 IGKV1-17P01599 117 aa11.72□□□□□ -0.53
CLN3-246ENST00000636228 CRYBB3P26998 211 aa11.72□□□□□ -0.53
CLN3-246ENST00000636228 RORCP51449 518 aa11.72□□□□□ -0.53
CLN3-246ENST00000636228 SCGB2B2Q4G0G5 96 aa11.72□□□□□ -0.53
CLN3-246ENST00000636228 ACTL10Q5JWF8 245 aa11.72□□□□□ -0.53
CLN3-246ENST00000636228 OR4X1Q8NH49 305 aa11.72□□□□□ -0.53
CLN3-246ENST00000636228 NAA50Q9GZZ1 169 aaKnown RBP11.72□□□□□ -0.53
CLN3-246ENST00000636228 CORTO00230 105 aa11.71□□□□□ -0.53
CLN3-246ENST00000636228 ATG12O94817 140 aa11.71□□□□□ -0.53
CLN3-246ENST00000636228 HLA-DMBP28068 263 aa11.71□□□□□ -0.53
CLN3-246ENST00000636228 OR13C8Q8NGS7 320 aa11.71□□□□□ -0.53
CLN3-246ENST00000636228 RNASE11Q8TAA1 199 aaKnown RBP11.71□□□□□ -0.53
CLN3-246ENST00000636228 MARCH1Q8TCQ1 289 aa11.71□□□□□ -0.53
CLN3-246ENST00000636228 RRNAD1Q96FB5 475 aaKnown RBP11.71□□□□□ -0.53
CLN3-246ENST00000636228 ABHD1Q96SE0 405 aa11.71□□□□□ -0.53
CLN3-246ENST00000636228 EXTL2Q9UBQ6 330 aa11.71□□□□□ -0.53
CLN3-246ENST00000636228 MTFP1Q9UDX5 166 aa11.71□□□□□ -0.53
CLN3-246ENST00000636228 X6R8D5 127 aa11.71□□□□□ -0.53
CLN3-246ENST00000636228 ELOA3CA0A087WX78 387 aaPredicted RBP11.7□□□□□ -0.54
CLN3-246ENST00000636228 GABARAPO95166 117 aa11.7□□□□□ -0.54
CLN3-246ENST00000636228 UCP1P25874 307 aa11.7□□□□□ -0.54
CLN3-246ENST00000636228 BSXQ3C1V8 233 aa11.7□□□□□ -0.54
CLN3-246ENST00000636228 FAAP20Q6NZ36 180 aa11.7□□□□□ -0.54
CLN3-246ENST00000636228 MZT2AQ6P582 158 aa11.7□□□□□ -0.54
CLN3-246ENST00000636228 Q6ZTC4 211 aa11.7□□□□□ -0.54
CLN3-246ENST00000636228 ARRDC1Q8N5I2 433 aa11.7□□□□□ -0.54
CLN3-246ENST00000636228 TERB2Q8NHR7 220 aa11.7□□□□□ -0.54
CLN3-246ENST00000636228 DCANP1Q8TF63 244 aa11.7□□□□□ -0.54
CLN3-246ENST00000636228 HECTD4Q9Y4D8 3996 aa11.7□□□□□ -0.54
CLN3-246ENST00000636228 DHRS2Q13268 280 aa11.69□□□□□ -0.54
CLN3-246ENST00000636228 CTF1Q16619 201 aa11.69□□□□□ -0.54
CLN3-246ENST00000636228 PSMG4Q5JS54 123 aa11.69□□□□□ -0.54
CLN3-246ENST00000636228 GPR107Q5VW38 600 aa11.69□□□□□ -0.54
CLN3-246ENST00000636228 ZNF767PQ75MW2 155 aa11.69□□□□□ -0.54
CLN3-246ENST00000636228 CCDC71LQ8N9Z2 235 aa11.69□□□□□ -0.54
CLN3-246ENST00000636228 LHFPL5Q8TAF8 219 aa11.69□□□□□ -0.54
CLN3-246ENST00000636228 ZFAND1Q8TCF1 268 aa11.69□□□□□ -0.54
CLN3-246ENST00000636228 GRAMD2BQ96HH9 432 aa11.69□□□□□ -0.54
CLN3-246ENST00000636228 RAB40CQ96S21 281 aa11.69□□□□□ -0.54
CLN3-246ENST00000636228 HRH4Q9H3N8 390 aa11.69□□□□□ -0.54
CLN3-246ENST00000636228 KIAA1109Q2LD37 5005 aa11.68□□□□□ -0.54
CLN3-246ENST00000636228 ZNF705EA8MWA4 302 aaPredicted RBP11.68□□□□□ -0.54
CLN3-246ENST00000636228 C11orf94C9JXX5 98 aa11.68□□□□□ -0.54
CLN3-246ENST00000636228 NXPH3O95157 252 aa11.68□□□□□ -0.54
CLN3-246ENST00000636228 RAB3DO95716 219 aa11.68□□□□□ -0.54
CLN3-246ENST00000636228 OR5AC1P0C628 307 aa11.68□□□□□ -0.54
CLN3-246ENST00000636228 SPP1P10451 314 aa11.68□□□□□ -0.54
CLN3-246ENST00000636228 MIFP14174 115 aa11.68□□□□□ -0.54
CLN3-246ENST00000636228 RND2P52198 227 aa11.68□□□□□ -0.54
CLN3-246ENST00000636228 TCTAP57738 103 aa11.68□□□□□ -0.54
CLN3-246ENST00000636228 SPCS3P61009 180 aa11.68□□□□□ -0.54
CLN3-246ENST00000636228 DHODHQ02127 395 aa11.68□□□□□ -0.54
CLN3-246ENST00000636228 PRSS54Q6PEW0 395 aa11.68□□□□□ -0.54
CLN3-246ENST00000636228 MORN3Q6PF18 240 aaPredicted RBP11.68□□□□□ -0.54
CLN3-246ENST00000636228 CLVS1Q8IUQ0 354 aaPredicted RBP11.68□□□□□ -0.54
CLN3-246ENST00000636228 TMEM229BQ8NBD8 167 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 85.2 ms