RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 PVRIGQ6DKI7 326 aa10.31□□□□□ -0.76
LINC00540-203ENST00000631321 ASCL5Q7RTU5 278 aa10.31□□□□□ -0.76
LINC00540-203ENST00000631321 OR5AU1Q8NGC0 362 aa10.31□□□□□ -0.76
LINC00540-203ENST00000631321 KAAG1Q9UBP8 84 aa10.31□□□□□ -0.76
LINC00540-203ENST00000631321 KLK10O43240 276 aa10.3□□□□□ -0.76
LINC00540-203ENST00000631321 COX7A2P2O60397 106 aa10.3□□□□□ -0.76
LINC00540-203ENST00000631321 LOXP28300 417 aaPredicted RBP10.3□□□□□ -0.76
LINC00540-203ENST00000631321 MRGPRG-AS1Q2M3A8 158 aa10.3□□□□□ -0.76
LINC00540-203ENST00000631321 LYPD2Q6UXB3 125 aa10.3□□□□□ -0.76
LINC00540-203ENST00000631321 PATE2Q6UY27 113 aa10.3□□□□□ -0.76
LINC00540-203ENST00000631321 CTSZQ9UBR2 303 aa10.3□□□□□ -0.76
LINC00540-203ENST00000631321 ZNF318Q5VUA4 2279 aa10.3□□□□□ -0.76
LINC00540-203ENST00000631321 TMEM155Q4W5P6 130 aa10.29□□□□□ -0.76
LINC00540-203ENST00000631321 C10orf55Q5SWW7 151 aa10.29□□□□□ -0.76
LINC00540-203ENST00000631321 IBA57Q5T440 356 aaKnown RBP10.29□□□□□ -0.76
LINC00540-203ENST00000631321 TPTE2P1Q5T6R2 138 aa10.29□□□□□ -0.76
LINC00540-203ENST00000631321 C10orf113Q5VZT2 155 aa10.29□□□□□ -0.76
LINC00540-203ENST00000631321 TEX43Q6ZNM6 134 aa10.29□□□□□ -0.76
LINC00540-203ENST00000631321 BAGE3Q86Y29 109 aa10.29□□□□□ -0.76
LINC00540-203ENST00000631321 BAGE2Q86Y30 109 aa10.29□□□□□ -0.76
LINC00540-203ENST00000631321 H1FXQ92522 213 aaKnown RBP10.29□□□□□ -0.76
LINC00540-203ENST00000631321 NPIPB3Q92617 1050 aa10.29□□□□□ -0.76
LINC00540-203ENST00000631321 PAXXQ9BUH6 204 aa10.29□□□□□ -0.76
LINC00540-203ENST00000631321 ZNF355PQ9NSJ1 428 aa10.29□□□□□ -0.76
LINC00540-203ENST00000631321 BOD1L1Q8NFC6 3051 aa10.29□□□□□ -0.76
LINC00540-203ENST00000631321 AMY1AP04745 511 aa10.29□□□□□ -0.76
LINC00540-203ENST00000631321 MC5RP33032 325 aa10.29□□□□□ -0.76
LINC00540-203ENST00000631321 BPIFB3P59826 476 aa10.29□□□□□ -0.76
LINC00540-203ENST00000631321 FXYD3Q14802 87 aa10.29□□□□□ -0.76
LINC00540-203ENST00000631321 VMA21Q3ZAQ7 101 aa10.29□□□□□ -0.76
LINC00540-203ENST00000631321 OR10J3Q5JRS4 329 aa10.29□□□□□ -0.76
LINC00540-203ENST00000631321 FAM231DQ6ZW35 169 aa10.29□□□□□ -0.76
LINC00540-203ENST00000631321 ZNF329Q86UD4 541 aa10.29□□□□□ -0.76
LINC00540-203ENST00000631321 CCL17Q92583 94 aa10.29□□□□□ -0.76
LINC00540-203ENST00000631321 TBX15Q96SF7 602 aa10.29□□□□□ -0.76
LINC00540-203ENST00000631321 GNB4Q9HAV0 340 aa10.29□□□□□ -0.76
LINC00540-203ENST00000631321 NAT8BQ9UHF3 227 aa10.29□□□□□ -0.76
LINC00540-203ENST00000631321 YLPM1P49750 1951 aaKnown RBP10.28□□□□□ -0.76
LINC00540-203ENST00000631321 F2Z2F3 143 aa10.28□□□□□ -0.76
LINC00540-203ENST00000631321 CRYGCP07315 174 aa10.28□□□□□ -0.76
LINC00540-203ENST00000631321 TGIF2LXQ8IUE1 241 aa10.28□□□□□ -0.76
LINC00540-203ENST00000631321 RNASE6Q93091 150 aaKnown RBP10.28□□□□□ -0.76
LINC00540-203ENST00000631321 HSPB9Q9BQS6 159 aa10.28□□□□□ -0.76
LINC00540-203ENST00000631321 AMMECR1Q9Y4X0 333 aaPredicted RBP10.28□□□□□ -0.76
LINC00540-203ENST00000631321 IZUMO1RA6ND01 250 aa10.28□□□□□ -0.76
LINC00540-203ENST00000631321 VSTM5A8MXK1 200 aa10.28□□□□□ -0.76
LINC00540-203ENST00000631321 HLA-DQA1P01909 254 aa10.28□□□□□ -0.76
LINC00540-203ENST00000631321 LGALS7P47929 136 aa10.28□□□□□ -0.76
LINC00540-203ENST00000631321 FXYD5Q96DB9 178 aa10.28□□□□□ -0.76
LINC00540-203ENST00000631321 MBD6Q96DN6 1003 aa10.28□□□□□ -0.76
LINC00540-203ENST00000631321 MRPL36Q9P0J6 103 aaKnown RBP10.28□□□□□ -0.76
LINC00540-203ENST00000631321 ZNF835Q9Y2P0 537 aa10.28□□□□□ -0.76
LINC00540-203ENST00000631321 A0A1W2PPI3 338 aa10.27□□□□□ -0.76
LINC00540-203ENST00000631321 ZNF705FA8MVS1 300 aaPredicted RBP10.27□□□□□ -0.76
LINC00540-203ENST00000631321 ZNF705DP0CH99 300 aaPredicted RBP10.27□□□□□ -0.76
LINC00540-203ENST00000631321 ZNF705BP0CI00 300 aaPredicted RBP10.27□□□□□ -0.76
LINC00540-203ENST00000631321 RNF224P0DH78 156 aa10.27□□□□□ -0.76
LINC00540-203ENST00000631321 PYYP10082 97 aa10.27□□□□□ -0.76
LINC00540-203ENST00000631321 MGST1P10620 155 aaKnown RBP10.27□□□□□ -0.76
LINC00540-203ENST00000631321 MYCNOSP40205 109 aa10.27□□□□□ -0.76
LINC00540-203ENST00000631321 WIPF2Q8TF74 440 aaPredicted RBP10.27□□□□□ -0.76
LINC00540-203ENST00000631321 C20orf144Q9BQM9 153 aa10.27□□□□□ -0.76
LINC00540-203ENST00000631321 DMXL1Q9Y485 3027 aa10.27□□□□□ -0.77
LINC00540-203ENST00000631321 RP1L1Q8IWN7 2480 aaPredicted RBP10.27□□□□□ -0.77
LINC00540-203ENST00000631321 PEX7O00628 323 aa10.27□□□□□ -0.77
LINC00540-203ENST00000631321 EREGO14944 169 aa10.27□□□□□ -0.77
LINC00540-203ENST00000631321 SLC25A17O43808 307 aa10.27□□□□□ -0.77
LINC00540-203ENST00000631321 IGHV1-8P0DP01 117 aa10.27□□□□□ -0.77
LINC00540-203ENST00000631321 BRS3P32247 399 aa10.27□□□□□ -0.77
LINC00540-203ENST00000631321 RASL11AQ6T310 242 aa10.27□□□□□ -0.77
LINC00540-203ENST00000631321 C11orf42Q8N5U0 333 aa10.27□□□□□ -0.77
LINC00540-203ENST00000631321 TEX45Q8NA69 505 aa10.27□□□□□ -0.77
LINC00540-203ENST00000631321 TPSG1Q9NRR2 321 aa10.27□□□□□ -0.77
LINC00540-203ENST00000631321 IGLC7A0M8Q6 106 aa10.26□□□□□ -0.77
LINC00540-203ENST00000631321 GPX1P07203 203 aa10.26□□□□□ -0.77
LINC00540-203ENST00000631321 TCL1AP56279 114 aa10.26□□□□□ -0.77
LINC00540-203ENST00000631321 USF2Q15853 346 aaPredicted RBP10.26□□□□□ -0.77
LINC00540-203ENST00000631321 ETFRF1Q6IPR1 90 aa10.26□□□□□ -0.77
LINC00540-203ENST00000631321 TOMM20LQ6UXN7 152 aa10.26□□□□□ -0.77
LINC00540-203ENST00000631321 Q8NA96 180 aa10.26□□□□□ -0.77
LINC00540-203ENST00000631321 RITA1Q96K30 269 aa10.26□□□□□ -0.77
LINC00540-203ENST00000631321 LINC00479Q96M42 142 aa10.26□□□□□ -0.77
LINC00540-203ENST00000631321 SHISA9B4DS77 424 aa10.26□□□□□ -0.77
LINC00540-203ENST00000631321 BMPR1BO00238 502 aa10.26□□□□□ -0.77
LINC00540-203ENST00000631321 CD33P20138 364 aa10.26□□□□□ -0.77
LINC00540-203ENST00000631321 PAX2Q02962 417 aa10.26□□□□□ -0.77
LINC00540-203ENST00000631321 MRPL52Q86TS9 123 aaKnown RBP10.26□□□□□ -0.77
LINC00540-203ENST00000631321 DMRTC2Q8IXT2 367 aaPredicted RBP10.26□□□□□ -0.77
LINC00540-203ENST00000631321 STXBP6Q8NFX7 210 aa10.26□□□□□ -0.77
LINC00540-203ENST00000631321 TNFRSF14Q92956 283 aa10.26□□□□□ -0.77
LINC00540-203ENST00000631321 ABHD17AQ96GS6 310 aa10.26□□□□□ -0.77
LINC00540-203ENST00000631321 TRGV9Q99603 122 aa10.26□□□□□ -0.77
LINC00540-203ENST00000631321 SNHG12Q9BXW3 62 aa10.26□□□□□ -0.77
LINC00540-203ENST00000631321 SAMD10Q9BYL1 202 aa10.26□□□□□ -0.77
LINC00540-203ENST00000631321 TMEM133Q9H2Q1 129 aa10.26□□□□□ -0.77
LINC00540-203ENST00000631321 SSUH2Q9Y2M2 353 aa10.26□□□□□ -0.77
LINC00540-203ENST00000631321 CUL9Q8IWT3 2517 aa10.26□□□□□ -0.77
LINC00540-203ENST00000631321 C22orf46C9J442 243 aa10.25□□□□□ -0.77
LINC00540-203ENST00000631321 SPINK4O60575 86 aa10.25□□□□□ -0.77
LINC00540-203ENST00000631321 CRYGBP07316 175 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms