RNA–Protein interactions for RNA: ENST00000623985.3

LINC00643-206, long intergenic non-protein coding RNA 643, humanhuman

TSL 1 (best)

Gene LINC00643, Length 864 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-206ENST00000623985 HTR2BP41595 481 aa11.06□□□□□ -0.64
LINC00643-206ENST00000623985 KLF9Q13886 244 aaPredicted RBP11.06□□□□□ -0.64
LINC00643-206ENST00000623985 TMEM187Q14656 261 aa11.06□□□□□ -0.64
LINC00643-206ENST00000623985 ZNF79Q15937 498 aa11.06□□□□□ -0.64
LINC00643-206ENST00000623985 PYDC2Q56P42 97 aa11.06□□□□□ -0.64
LINC00643-206ENST00000623985 CASC10Q5T4H9 136 aa11.06□□□□□ -0.64
LINC00643-206ENST00000623985 TOMM5Q8N4H5 51 aa11.06□□□□□ -0.64
LINC00643-206ENST00000623985 DEDD2Q8WXF8 326 aa11.06□□□□□ -0.64
LINC00643-206ENST00000623985 GPR146Q96CH1 333 aa11.06□□□□□ -0.64
LINC00643-206ENST00000623985 RETNQ9HD89 108 aa11.06□□□□□ -0.64
LINC00643-206ENST00000623985 CACFD1Q9UGQ2 172 aa11.06□□□□□ -0.64
LINC00643-206ENST00000623985 SMPXQ9UHP9 88 aa11.06□□□□□ -0.64
LINC00643-206ENST00000623985 TENM2Q9NT68 2774 aa11.06□□□□□ -0.64
LINC00643-206ENST00000623985 OR4C46A6NHA9 309 aa11.05□□□□□ -0.64
LINC00643-206ENST00000623985 SCGB2A1O75556 95 aa11.05□□□□□ -0.64
LINC00643-206ENST00000623985 SULT1A3P0DMM9 295 aa11.05□□□□□ -0.64
LINC00643-206ENST00000623985 SULT1A4P0DMN0 295 aa11.05□□□□□ -0.64
LINC00643-206ENST00000623985 ANXA3P12429 323 aa11.05□□□□□ -0.64
LINC00643-206ENST00000623985 LYL1P12980 280 aa11.05□□□□□ -0.64
LINC00643-206ENST00000623985 BMI1P35226 326 aa11.05□□□□□ -0.64
LINC00643-206ENST00000623985 SUPT4H1P63272 117 aaKnown RBP11.05□□□□□ -0.64
LINC00643-206ENST00000623985 SRPXP78539 464 aa11.05□□□□□ -0.64
LINC00643-206ENST00000623985 ZNF600Q6ZNG1 722 aa11.05□□□□□ -0.64
LINC00643-206ENST00000623985 TMEM116Q8NCL8 245 aa11.05□□□□□ -0.64
LINC00643-206ENST00000623985 FAM110AQ9BQ89 295 aa11.05□□□□□ -0.64
LINC00643-206ENST00000623985 GGTLC1Q9BX51 225 aa11.05□□□□□ -0.64
LINC00643-206ENST00000623985 ZFAND3Q9H8U3 227 aa11.05□□□□□ -0.64
LINC00643-206ENST00000623985 LOC102724200A0A096LPH7 203 aaPredicted RBP11.04□□□□□ -0.64
LINC00643-206ENST00000623985 TRAV14DV4A0A0A6YYC5 116 aa11.04□□□□□ -0.64
LINC00643-206ENST00000623985 A0A0B4J2A0 478 aa11.04□□□□□ -0.64
LINC00643-206ENST00000623985 PIGBOS1A0A0B4J2F0 54 aa11.04□□□□□ -0.64
LINC00643-206ENST00000623985 CHEK1O14757 476 aa11.04□□□□□ -0.64
LINC00643-206ENST00000623985 AKR1C4P17516 323 aa11.04□□□□□ -0.64
LINC00643-206ENST00000623985 CCDC190Q86UF4 302 aa11.04□□□□□ -0.64
LINC00643-206ENST00000623985 SLC24A4Q8NFF2 622 aa11.04□□□□□ -0.64
LINC00643-206ENST00000623985 RNF2Q99496 336 aa11.04□□□□□ -0.64
LINC00643-206ENST00000623985 RHPN1-AS1Q9BWJ2 59 aa11.04□□□□□ -0.64
LINC00643-206ENST00000623985 FNDC4Q9H6D8 234 aaPredicted RBP11.04□□□□□ -0.64
LINC00643-206ENST00000623985 SHPKQ9UHJ6 478 aa11.04□□□□□ -0.64
LINC00643-206ENST00000623985 RPS10-NUDT3A0A1W2PQS6 291 aa11.03□□□□□ -0.64
LINC00643-206ENST00000623985 CEBPZOSA8MTT3 80 aa11.03□□□□□ -0.64
LINC00643-206ENST00000623985 CLN5O75503 358 aa11.03□□□□□ -0.64
LINC00643-206ENST00000623985 TMEM50AO95807 157 aa11.03□□□□□ -0.64
LINC00643-206ENST00000623985 ODF3L2Q3SX64 289 aa11.03□□□□□ -0.64
LINC00643-206ENST00000623985 C2orf83Q53S99 150 aa11.03□□□□□ -0.64
LINC00643-206ENST00000623985 NMSQ5H8A3 153 aa11.03□□□□□ -0.64
LINC00643-206ENST00000623985 SPANXN2Q5MJ10 180 aa11.03□□□□□ -0.64
LINC00643-206ENST00000623985 TOMM20LQ6UXN7 152 aa11.03□□□□□ -0.64
LINC00643-206ENST00000623985 OR4X1Q8NH49 305 aa11.03□□□□□ -0.64
LINC00643-206ENST00000623985 HEYLQ9NQ87 328 aaPredicted RBP11.03□□□□□ -0.64
LINC00643-206ENST00000623985 PRR13Q9NZ81 148 aa11.03□□□□□ -0.64
LINC00643-206ENST00000623985 UBQLN2Q9UHD9 624 aa11.03□□□□□ -0.64
LINC00643-206ENST00000623985 PUS1Q9Y606 427 aaKnown RBP eCLIP11.03□□□□□ -0.64
LINC00643-206ENST00000623985 IGHV3-49A0A0A0MS15 119 aa11.02□□□□□ -0.65
LINC00643-206ENST00000623985 DUXBA0A1W2PPF3 345 aa11.02□□□□□ -0.65
LINC00643-206ENST00000623985 CD5P06127 495 aa11.02□□□□□ -0.65
LINC00643-206ENST00000623985 CCR6P51684 374 aa11.02□□□□□ -0.65
LINC00643-206ENST00000623985 SMCO1Q147U7 214 aa11.02□□□□□ -0.65
LINC00643-206ENST00000623985 TMEM128Q5BJH2 165 aa11.02□□□□□ -0.65
LINC00643-206ENST00000623985 LGI3Q8N145 548 aa11.02□□□□□ -0.65
LINC00643-206ENST00000623985 RNASEH2CQ8TDP1 164 aaKnown RBP11.02□□□□□ -0.65
LINC00643-206ENST00000623985 SLC25A21Q9BQT8 299 aaPredicted RBP11.02□□□□□ -0.65
LINC00643-206ENST00000623985 MRPL36Q9P0J6 103 aaKnown RBP11.02□□□□□ -0.65
LINC00643-206ENST00000623985 DYNC2H1Q8NCM8 4307 aaKnown RBP11.01□□□□□ -0.65
LINC00643-206ENST00000623985 TRAV30A0A087WSZ9 112 aa11.01□□□□□ -0.65
LINC00643-206ENST00000623985 NXPH3O95157 252 aa11.01□□□□□ -0.65
LINC00643-206ENST00000623985 SLC25A4P12235 298 aa11.01□□□□□ -0.65
LINC00643-206ENST00000623985 NPY1RP25929 384 aa11.01□□□□□ -0.65
LINC00643-206ENST00000623985 APOC4P55056 127 aa11.01□□□□□ -0.65
LINC00643-206ENST00000623985 TNFRSF9Q07011 255 aa11.01□□□□□ -0.65
LINC00643-206ENST00000623985 FAM90A2PQ658T7 463 aa11.01□□□□□ -0.65
LINC00643-206ENST00000623985 TMED4Q7Z7H5 227 aa11.01□□□□□ -0.65
LINC00643-206ENST00000623985 NOXA1Q86UR1 476 aa11.01□□□□□ -0.65
LINC00643-206ENST00000623985 TMEM231Q9H6L2 316 aa11.01□□□□□ -0.65
LINC00643-206ENST00000623985 VSIRQ9H7M9 311 aa11.01□□□□□ -0.65
LINC00643-206ENST00000623985 HSPB7Q9UBY9 170 aa11.01□□□□□ -0.65
LINC00643-206ENST00000623985 A0A1B0GU03 582 aa11□□□□□ -0.65
LINC00643-206ENST00000623985 ETFRF1Q6IPR1 90 aa11□□□□□ -0.65
LINC00643-206ENST00000623985 TCF24Q7RTU0 167 aa11□□□□□ -0.65
LINC00643-206ENST00000623985 LYZL2Q7Z4W2 148 aa11□□□□□ -0.65
LINC00643-206ENST00000623985 ST8SIA2Q92186 375 aa11□□□□□ -0.65
LINC00643-206ENST00000623985 SRRQ9GZT4 340 aa11□□□□□ -0.65
LINC00643-206ENST00000623985 IGHV3OR16-13A0A075B7E8 117 aa10.99□□□□□ -0.65
LINC00643-206ENST00000623985 IGHV3-74A0A0B4J1X5 117 aa10.99□□□□□ -0.65
LINC00643-206ENST00000623985 IGKV1-17P01599 117 aa10.99□□□□□ -0.65
LINC00643-206ENST00000623985 CMC4P56277 68 aaPredicted RBP10.99□□□□□ -0.65
LINC00643-206ENST00000623985 PAFAH1B2P68402 229 aa10.99□□□□□ -0.65
LINC00643-206ENST00000623985 RBMS2Q15434 407 aaKnown RBP10.99□□□□□ -0.65
LINC00643-206ENST00000623985 MLANAQ16655 118 aa10.99□□□□□ -0.65
LINC00643-206ENST00000623985 PRSS54Q6PEW0 395 aa10.99□□□□□ -0.65
LINC00643-206ENST00000623985 LRTM2Q8N967 370 aa10.99□□□□□ -0.65
LINC00643-206ENST00000623985 OR1S2Q8NGQ3 325 aa10.99□□□□□ -0.65
LINC00643-206ENST00000623985 DTD1Q8TEA8 209 aa10.99□□□□□ -0.65
LINC00643-206ENST00000623985 TMEM170AQ8WVE7 144 aa10.99□□□□□ -0.65
LINC00643-206ENST00000623985 AGRNO00468 2067 aa10.99□□□□□ -0.65
LINC00643-206ENST00000623985 IGKV3-7A0A075B6H7 116 aa10.98□□□□□ -0.65
LINC00643-206ENST00000623985 TRAV2A0A0B4J234 112 aa10.98□□□□□ -0.65
LINC00643-206ENST00000623985 KIR2DL5BA0A0G2JN68 375 aa10.98□□□□□ -0.65
LINC00643-206ENST00000623985 KIR2DL5BA0A0G2JPC4 375 aa10.98□□□□□ -0.65
LINC00643-206ENST00000623985 A0A1W2PS18 150 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 83.5 ms