RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 OR5AU1Q8NGC0 362 aa12.65□□□□□ -0.38
CPSF1-213ENST00000620219 RANP62826 216 aaKnown RBP12.65□□□□□ -0.38
CPSF1-213ENST00000620219 CX3CL1P78423 397 aa12.65□□□□□ -0.38
CPSF1-213ENST00000620219 CD69Q07108 199 aa12.65□□□□□ -0.38
CPSF1-213ENST00000620219 GAB2Q9UQC2 676 aa12.65□□□□□ -0.38
CPSF1-213ENST00000620219 CHD6Q8TD26 2715 aa12.65□□□□□ -0.38
CPSF1-213ENST00000620219 ITPR1Q14643 2758 aa12.65□□□□□ -0.38
CPSF1-213ENST00000620219 ZNF320A2RRD8 509 aa12.65□□□□□ -0.38
CPSF1-213ENST00000620219 VDAC2P45880 294 aaPredicted RBP12.65□□□□□ -0.38
CPSF1-213ENST00000620219 DNASE2O00115 360 aaPredicted RBP12.64□□□□□ -0.39
CPSF1-213ENST00000620219 MSMBP08118 114 aa12.64□□□□□ -0.39
CPSF1-213ENST00000620219 WT1-ASQ06250 92 aa12.64□□□□□ -0.39
CPSF1-213ENST00000620219 OR1L4Q8NGR5 311 aa12.64□□□□□ -0.39
CPSF1-213ENST00000620219 TVP23CQ96ET8 276 aa12.64□□□□□ -0.39
CPSF1-213ENST00000620219 GAMTQ14353 236 aa12.64□□□□□ -0.39
CPSF1-213ENST00000620219 TMEM68Q96MH6 324 aa12.64□□□□□ -0.39
CPSF1-213ENST00000620219 FCN3O75636 299 aa12.64□□□□□ -0.39
CPSF1-213ENST00000620219 RNASE2P10153 161 aaKnown RBP12.64□□□□□ -0.39
CPSF1-213ENST00000620219 ICAM4Q14773 271 aa12.64□□□□□ -0.39
CPSF1-213ENST00000620219 C5orf64Q2M2E5 130 aa12.64□□□□□ -0.39
CPSF1-213ENST00000620219 Q5PR19 223 aa12.64□□□□□ -0.39
CPSF1-213ENST00000620219 OR4A5Q8NH83 315 aa12.64□□□□□ -0.39
CPSF1-213ENST00000620219 H3BUX3 64 aa12.64□□□□□ -0.39
CPSF1-213ENST00000620219 RD3LP0DJH9 198 aa12.64□□□□□ -0.39
CPSF1-213ENST00000620219 RAB4BP61018 213 aa12.64□□□□□ -0.39
CPSF1-213ENST00000620219 ZNF726P1Q15940 193 aa12.64□□□□□ -0.39
CPSF1-213ENST00000620219 MIR17HGQ75NE6 70 aa12.64□□□□□ -0.39
CPSF1-213ENST00000620219 TMEM144Q7Z5S9 345 aa12.64□□□□□ -0.39
CPSF1-213ENST00000620219 MGST2Q99735 147 aa12.64□□□□□ -0.39
CPSF1-213ENST00000620219 GGTLC1Q9BX51 225 aa12.64□□□□□ -0.39
CPSF1-213ENST00000620219 MEF2BQ02080 365 aaPredicted RBP12.63□□□□□ -0.39
CPSF1-213ENST00000620219 EIF4EBP1Q13541 118 aaPredicted RBP12.63□□□□□ -0.39
CPSF1-213ENST00000620219 LEMD1Q68G75 181 aa12.63□□□□□ -0.39
CPSF1-213ENST00000620219 OR51G1Q8NGK1 321 aa12.63□□□□□ -0.39
CPSF1-213ENST00000620219 SGK494Q96LW2 274 aa12.63□□□□□ -0.39
CPSF1-213ENST00000620219 DNAJC4Q9NNZ3 241 aa12.63□□□□□ -0.39
CPSF1-213ENST00000620219 C1orf196B1AJZ1 125 aa12.63□□□□□ -0.39
CPSF1-213ENST00000620219 E7EUB6 86 aa12.63□□□□□ -0.39
CPSF1-213ENST00000620219 HYPMO75409 117 aa12.63□□□□□ -0.39
CPSF1-213ENST00000620219 CXorf1O96002 111 aa12.63□□□□□ -0.39
CPSF1-213ENST00000620219 IGLV1-47P01700 117 aa12.63□□□□□ -0.39
CPSF1-213ENST00000620219 C16orf82Q7Z2V1 217 aa12.63□□□□□ -0.39
CPSF1-213ENST00000620219 KLF2Q9Y5W3 355 aaPredicted RBP12.63□□□□□ -0.39
CPSF1-213ENST00000620219 IGHV3-49A0A0A0MS15 119 aa12.63□□□□□ -0.39
CPSF1-213ENST00000620219 ZNF90Q03938 601 aa12.63□□□□□ -0.39
CPSF1-213ENST00000620219 KHDC3LQ587J8 217 aa12.63□□□□□ -0.39
CPSF1-213ENST00000620219 FAM120AOSQ5T036 256 aa12.63□□□□□ -0.39
CPSF1-213ENST00000620219 SPATA31B1PQ5VZV4 182 aa12.63□□□□□ -0.39
CPSF1-213ENST00000620219 CYP2G1PQ6ZSU1 146 aa12.63□□□□□ -0.39
CPSF1-213ENST00000620219 MDFIC2A0A1B0GVS7 189 aa12.62□□□□□ -0.39
CPSF1-213ENST00000620219 SRP19P09132 144 aaKnown RBP12.62□□□□□ -0.39
CPSF1-213ENST00000620219 DPPA3Q6W0C5 159 aa12.62□□□□□ -0.39
CPSF1-213ENST00000620219 FRZBQ92765 325 aa12.62□□□□□ -0.39
CPSF1-213ENST00000620219 CARHSP1Q9Y2V2 147 aaKnown RBP12.62□□□□□ -0.39
CPSF1-213ENST00000620219 H7BYZ3 331 aa12.62□□□□□ -0.39
CPSF1-213ENST00000620219 CORTO00230 105 aa12.62□□□□□ -0.39
CPSF1-213ENST00000620219 NDUFB4O95168 129 aa12.62□□□□□ -0.39
CPSF1-213ENST00000620219 MDKP21741 143 aaPredicted RBP12.62□□□□□ -0.39
CPSF1-213ENST00000620219 UBE2G1P62253 170 aa12.62□□□□□ -0.39
CPSF1-213ENST00000620219 SLC25A5P05141 298 aaKnown RBP12.62□□□□□ -0.39
CPSF1-213ENST00000620219 UBE2E1P51965 193 aa12.62□□□□□ -0.39
CPSF1-213ENST00000620219 Q8WTZ3 238 aa12.62□□□□□ -0.39
CPSF1-213ENST00000620219 GGACTQ9BVM4 153 aa12.62□□□□□ -0.39
CPSF1-213ENST00000620219 F6UZH7 168 aa12.62□□□□□ -0.39
CPSF1-213ENST00000620219 MT-ND4LP03901 98 aa12.62□□□□□ -0.39
CPSF1-213ENST00000620219 MINOS1Q5TGZ0 78 aa12.62□□□□□ -0.39
CPSF1-213ENST00000620219 MALSU1Q96EH3 234 aa12.62□□□□□ -0.39
CPSF1-213ENST00000620219 PFDN5Q99471 154 aa12.62□□□□□ -0.39
CPSF1-213ENST00000620219 NDUFA4L2Q9NRX3 87 aa12.62□□□□□ -0.39
CPSF1-213ENST00000620219 TIMM9Q9Y5J7 89 aa12.62□□□□□ -0.39
CPSF1-213ENST00000620219 MINOS1-NBL1R4GNA1 71 aa12.62□□□□□ -0.39
CPSF1-213ENST00000620219 HELZ2Q9BYK8 2649 aaKnown RBP12.61□□□□□ -0.39
CPSF1-213ENST00000620219 HOXB4P17483 251 aaPredicted RBP12.61□□□□□ -0.39
CPSF1-213ENST00000620219 DLX6P56179 175 aa12.61□□□□□ -0.39
CPSF1-213ENST00000620219 FAM71F2Q6NXP2 309 aa12.61□□□□□ -0.39
CPSF1-213ENST00000620219 ZNF343Q6P1L6 599 aa12.61□□□□□ -0.39
CPSF1-213ENST00000620219 Q96MF0 132 aa12.61□□□□□ -0.39
CPSF1-213ENST00000620219 SEPSECSQ9HD40 501 aaKnown RBP12.61□□□□□ -0.39
CPSF1-213ENST00000620219 FBXL7Q9UJT9 491 aa12.61□□□□□ -0.39
CPSF1-213ENST00000620219 LOC102723971A0A1B0GUV8 181 aa12.61□□□□□ -0.39
CPSF1-213ENST00000620219 IL4P05112 153 aa12.61□□□□□ -0.39
CPSF1-213ENST00000620219 RAB5BP61020 215 aa12.61□□□□□ -0.39
CPSF1-213ENST00000620219 TMEM241Q24JQ0 296 aa12.61□□□□□ -0.39
CPSF1-213ENST00000620219 C2orf83Q53S99 150 aa12.61□□□□□ -0.39
CPSF1-213ENST00000620219 OR8I2Q8N0Y5 310 aa12.61□□□□□ -0.39
CPSF1-213ENST00000620219 PAXXQ9BUH6 204 aa12.61□□□□□ -0.39
CPSF1-213ENST00000620219 FCGR2BP31994 310 aaPredicted RBP12.61□□□□□ -0.39
CPSF1-213ENST00000620219 LMO4P61968 165 aa12.61□□□□□ -0.39
CPSF1-213ENST00000620219 C10orf105Q8TEF2 133 aa12.61□□□□□ -0.39
CPSF1-213ENST00000620219 NDUFS8O00217 210 aa12.6□□□□□ -0.39
CPSF1-213ENST00000620219 ZNF207O43670 478 aaKnown RBP12.6□□□□□ -0.39
CPSF1-213ENST00000620219 ATP5G3P48201 142 aa12.6□□□□□ -0.39
CPSF1-213ENST00000620219 MANBALQ9NQG1 85 aa12.6□□□□□ -0.39
CPSF1-213ENST00000620219 IGHV3-11P01762 117 aa12.6□□□□□ -0.39
CPSF1-213ENST00000620219 CRYBA1P05813 215 aa12.6□□□□□ -0.39
CPSF1-213ENST00000620219 P0C879 139 aa12.6□□□□□ -0.39
CPSF1-213ENST00000620219 COMPP49747 757 aaPredicted RBP12.6□□□□□ -0.39
CPSF1-213ENST00000620219 SELENOTP62341 195 aa12.6□□□□□ -0.39
CPSF1-213ENST00000620219 TIGITQ495A1 244 aa12.6□□□□□ -0.39
CPSF1-213ENST00000620219 LINC00305Q7Z4B0 112 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms