RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 SCGB1D2O95969 90 aa10.22□□□□□ -0.77
LINC00540-202ENST00000616974 IFNA10P01566 189 aa10.22□□□□□ -0.77
LINC00540-202ENST00000616974 IAH1Q2TAA2 248 aaPredicted RBP10.22□□□□□ -0.77
LINC00540-202ENST00000616974 PRSS54Q6PEW0 395 aa10.22□□□□□ -0.77
LINC00540-202ENST00000616974 COQ8AQ8NI60 647 aa10.22□□□□□ -0.77
LINC00540-202ENST00000616974 GSKIPQ9P0R6 139 aa10.22□□□□□ -0.77
LINC00540-202ENST00000616974 C2orf70A6NJV1 201 aa10.21□□□□□ -0.77
LINC00540-202ENST00000616974 FAM25EA8MYX2 175 aa10.21□□□□□ -0.77
LINC00540-202ENST00000616974 NPY1RP25929 384 aa10.21□□□□□ -0.77
LINC00540-202ENST00000616974 C2orf83Q53S99 150 aa10.21□□□□□ -0.77
LINC00540-202ENST00000616974 RCL1Q9Y2P8 373 aaKnown RBP10.21□□□□□ -0.77
LINC00540-202ENST00000616974 INMT-MINDY4F8WBC2 141 aa10.21□□□□□ -0.78
LINC00540-202ENST00000616974 IGLV1-51P01701 117 aa10.21□□□□□ -0.78
LINC00540-202ENST00000616974 HTR2BP41595 481 aa10.21□□□□□ -0.78
LINC00540-202ENST00000616974 PAX9P55771 341 aa10.21□□□□□ -0.78
LINC00540-202ENST00000616974 ID3Q02535 119 aa10.21□□□□□ -0.78
LINC00540-202ENST00000616974 C12orf45Q8N5I9 185 aaPredicted RBP10.21□□□□□ -0.78
LINC00540-202ENST00000616974 MLXQ9UH92 298 aa10.21□□□□□ -0.78
LINC00540-202ENST00000616974 PAIP2BQ9ULR5 123 aaKnown RBP10.21□□□□□ -0.78
LINC00540-202ENST00000616974 SYNGR2O43760 224 aa10.2□□□□□ -0.78
LINC00540-202ENST00000616974 SSSCA1O60232 199 aa10.2□□□□□ -0.78
LINC00540-202ENST00000616974 MBPP02686 304 aaPredicted RBP10.2□□□□□ -0.78
LINC00540-202ENST00000616974 FOLR2P14207 255 aa10.2□□□□□ -0.78
LINC00540-202ENST00000616974 RND2P52198 227 aa10.2□□□□□ -0.78
LINC00540-202ENST00000616974 GPHB5Q86YW7 130 aa10.2□□□□□ -0.78
LINC00540-202ENST00000616974 ZBTB8BQ8NAP8 495 aaPredicted RBP10.2□□□□□ -0.78
LINC00540-202ENST00000616974 BSCL2Q96G97 398 aaPredicted RBP10.2□□□□□ -0.78
LINC00540-202ENST00000616974 MCRIP2Q9BUT9 160 aaKnown RBP10.2□□□□□ -0.78
LINC00540-202ENST00000616974 C20orf24Q9BUV8 137 aa10.2□□□□□ -0.78
LINC00540-202ENST00000616974 IGKV1-17P01599 117 aa10.19□□□□□ -0.78
LINC00540-202ENST00000616974 APOHP02749 345 aaPredicted RBP10.19□□□□□ -0.78
LINC00540-202ENST00000616974 SLC25A6P12236 298 aa10.19□□□□□ -0.78
LINC00540-202ENST00000616974 MFAP4P55083 255 aa10.19□□□□□ -0.78
LINC00540-202ENST00000616974 CD300EQ496F6 205 aaPredicted RBP10.19□□□□□ -0.78
LINC00540-202ENST00000616974 FAM209BQ5JX69 171 aa10.19□□□□□ -0.78
LINC00540-202ENST00000616974 GSG1LQ6UXU4 331 aa10.19□□□□□ -0.78
LINC00540-202ENST00000616974 LILRB2Q8N423 598 aa10.19□□□□□ -0.78
LINC00540-202ENST00000616974 MARVELD1Q9BSK0 173 aa10.19□□□□□ -0.78
LINC00540-202ENST00000616974 ZNF436Q9C0F3 470 aaPredicted RBP10.19□□□□□ -0.78
LINC00540-202ENST00000616974 GNG7O60262 68 aa10.19□□□□□ -0.78
LINC00540-202ENST00000616974 CBLN1P23435 193 aa10.19□□□□□ -0.78
LINC00540-202ENST00000616974 TIGITQ495A1 244 aa10.19□□□□□ -0.78
LINC00540-202ENST00000616974 BTNL8Q6UX41 500 aa10.19□□□□□ -0.78
LINC00540-202ENST00000616974 TMEM190Q8WZ59 177 aa10.19□□□□□ -0.78
LINC00540-202ENST00000616974 HIPK2Q9H2X6 1198 aa10.19□□□□□ -0.78
LINC00540-202ENST00000616974 IGKV1OR2-108A0A075B7D4 117 aa10.18□□□□□ -0.78
LINC00540-202ENST00000616974 IGHV3-66A0A0C4DH42 116 aa10.18□□□□□ -0.78
LINC00540-202ENST00000616974 PRSS46E5RG02 174 aa10.18□□□□□ -0.78
LINC00540-202ENST00000616974 YIF1AO95070 293 aa10.18□□□□□ -0.78
LINC00540-202ENST00000616974 LY86O95711 162 aa10.18□□□□□ -0.78
LINC00540-202ENST00000616974 NKX2-1P43699 371 aaPredicted RBP10.18□□□□□ -0.78
LINC00540-202ENST00000616974 SPANXN5Q5MJ07 72 aa10.18□□□□□ -0.78
LINC00540-202ENST00000616974 OR1L6Q8NGR2 347 aa10.18□□□□□ -0.78
LINC00540-202ENST00000616974 ACY3Q96HD9 319 aa10.18□□□□□ -0.78
LINC00540-202ENST00000616974 WFDC10AQ9H1F0 79 aa10.18□□□□□ -0.78
LINC00540-202ENST00000616974 A8MWP6 167 aa10.18□□□□□ -0.78
LINC00540-202ENST00000616974 REC114Q7Z4M0 266 aa10.18□□□□□ -0.78
LINC00540-202ENST00000616974 MRAPQ8TCY5 172 aa10.18□□□□□ -0.78
LINC00540-202ENST00000616974 NPIPB3Q92617 1050 aa10.18□□□□□ -0.78
LINC00540-202ENST00000616974 ZFAND3Q9H8U3 227 aa10.18□□□□□ -0.78
LINC00540-202ENST00000616974 CSMD3Q7Z407 3707 aa10.17□□□□□ -0.78
LINC00540-202ENST00000616974 C7orf66A4D0T2 115 aa10.17□□□□□ -0.78
LINC00540-202ENST00000616974 C5orf51A6NDU8 294 aa10.17□□□□□ -0.78
LINC00540-202ENST00000616974 IFNA21P01568 189 aa10.17□□□□□ -0.78
LINC00540-202ENST00000616974 IFNA4P05014 189 aa10.17□□□□□ -0.78
LINC00540-202ENST00000616974 IL5P05113 134 aa10.17□□□□□ -0.78
LINC00540-202ENST00000616974 IGLC1P0CG04 106 aa10.17□□□□□ -0.78
LINC00540-202ENST00000616974 FCGR2BP31994 310 aaPredicted RBP10.17□□□□□ -0.78
LINC00540-202ENST00000616974 SUB1P53999 127 aaKnown RBP eCLIP10.17□□□□□ -0.78
LINC00540-202ENST00000616974 CD69Q07108 199 aa10.17□□□□□ -0.78
LINC00540-202ENST00000616974 ARL16Q0P5N6 197 aa10.17□□□□□ -0.78
LINC00540-202ENST00000616974 TOMM20LQ6UXN7 152 aa10.17□□□□□ -0.78
LINC00540-202ENST00000616974 SLC16A13Q7RTY0 426 aa10.17□□□□□ -0.78
LINC00540-202ENST00000616974 TMEM61Q8N0U2 210 aa10.17□□□□□ -0.78
LINC00540-202ENST00000616974 ELOVL1Q9BW60 279 aa10.17□□□□□ -0.78
LINC00540-202ENST00000616974 ZNF256Q9Y2P7 627 aaPredicted RBP10.17□□□□□ -0.78
LINC00540-202ENST00000616974 PUS1Q9Y606 427 aaKnown RBP eCLIP10.17□□□□□ -0.78
LINC00540-202ENST00000616974 U3KQ87 197 aa10.17□□□□□ -0.78
LINC00540-202ENST00000616974 IGKV1D-37A0A075B6S9 117 aa10.16□□□□□ -0.78
LINC00540-202ENST00000616974 LGALS9O00182 355 aa10.16□□□□□ -0.78
LINC00540-202ENST00000616974 GOSR2O14653 212 aa10.16□□□□□ -0.78
LINC00540-202ENST00000616974 CYB5BO43169 146 aa10.16□□□□□ -0.78
LINC00540-202ENST00000616974 CLN5O75503 358 aa10.16□□□□□ -0.78
LINC00540-202ENST00000616974 SCAF4O95104 1147 aaKnown RBP10.16□□□□□ -0.78
LINC00540-202ENST00000616974 H2BFSP57053 126 aa10.16□□□□□ -0.78
LINC00540-202ENST00000616974 IL15RAQ13261 267 aa10.16□□□□□ -0.78
LINC00540-202ENST00000616974 GAMTQ14353 236 aa10.16□□□□□ -0.78
LINC00540-202ENST00000616974 DEFB114Q30KQ6 69 aa10.16□□□□□ -0.78
LINC00540-202ENST00000616974 FAM106AQ4KMX7 169 aa10.16□□□□□ -0.78
LINC00540-202ENST00000616974 OR4X1Q8NH49 305 aa10.16□□□□□ -0.78
LINC00540-202ENST00000616974 LSM5Q9Y4Y9 91 aaKnown RBP10.16□□□□□ -0.78
LINC00540-202ENST00000616974 PMS2P5A8MQ11 134 aa10.16□□□□□ -0.78
LINC00540-202ENST00000616974 FAM90A26D6RGX4 464 aa10.16□□□□□ -0.78
LINC00540-202ENST00000616974 NUPL2O15504 423 aaKnown RBP10.16□□□□□ -0.78
LINC00540-202ENST00000616974 DEFA1P59665 94 aa10.16□□□□□ -0.78
LINC00540-202ENST00000616974 DEFA3P59666 94 aa10.16□□□□□ -0.78
LINC00540-202ENST00000616974 ZNF90Q03938 601 aa10.16□□□□□ -0.78
LINC00540-202ENST00000616974 TATDN3Q17R31 274 aa10.16□□□□□ -0.78
LINC00540-202ENST00000616974 ZNF785A8K8V0 405 aa10.15□□□□□ -0.78
LINC00540-202ENST00000616974 K7EPK0 472 aa10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms