RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 IGHV3OR16-12A0A075B7B8 117 aa11.67□□□□□ -0.54
CPSF1-212ENST00000616140 NPIPB6E9PJ23 425 aa11.67□□□□□ -0.54
CPSF1-212ENST00000616140 MIEN1Q9BRT3 115 aa11.67□□□□□ -0.54
CPSF1-212ENST00000616140 WDR90Q96KV7 1748 aa11.67□□□□□ -0.54
CPSF1-212ENST00000616140 GPR183P32249 361 aa11.67□□□□□ -0.54
CPSF1-212ENST00000616140 PLAURQ03405 335 aa11.67□□□□□ -0.54
CPSF1-212ENST00000616140 RPP25LQ8N5L8 163 aaKnown RBP11.67□□□□□ -0.54
CPSF1-212ENST00000616140 EEF1AKMT3Q96AZ1 226 aa11.67□□□□□ -0.54
CPSF1-212ENST00000616140 SMIM12Q96EX1 92 aa11.67□□□□□ -0.54
CPSF1-212ENST00000616140 PRELID3AQ96N28 172 aa11.67□□□□□ -0.54
CPSF1-212ENST00000616140 ZNF581Q9P0T4 197 aa11.67□□□□□ -0.54
CPSF1-212ENST00000616140 APOHP02749 345 aaPredicted RBP11.66□□□□□ -0.54
CPSF1-212ENST00000616140 PYYP10082 97 aa11.66□□□□□ -0.54
CPSF1-212ENST00000616140 EFNB3Q15768 340 aa11.66□□□□□ -0.54
CPSF1-212ENST00000616140 NMSQ5H8A3 153 aa11.66□□□□□ -0.54
CPSF1-212ENST00000616140 RPP21Q9H633 154 aaKnown RBP11.66□□□□□ -0.54
CPSF1-212ENST00000616140 GTF3C1Q12789 2109 aa11.66□□□□□ -0.54
CPSF1-212ENST00000616140 TRAV8-6A0A0B4J262 113 aa11.66□□□□□ -0.54
CPSF1-212ENST00000616140 M0R381 172 aa11.66□□□□□ -0.54
CPSF1-212ENST00000616140 DLX6P56179 175 aa11.66□□□□□ -0.54
CPSF1-212ENST00000616140 SYT8Q8NBV8 401 aa11.66□□□□□ -0.54
CPSF1-212ENST00000616140 FOXH1O75593 365 aa11.66□□□□□ -0.54
CPSF1-212ENST00000616140 QRFPP83859 136 aa11.66□□□□□ -0.54
CPSF1-212ENST00000616140 LEMD1Q68G75 181 aa11.66□□□□□ -0.54
CPSF1-212ENST00000616140 GFRA3O60609 400 aa11.66□□□□□ -0.54
CPSF1-212ENST00000616140 CD69Q07108 199 aa11.66□□□□□ -0.54
CPSF1-212ENST00000616140 Q9H3A6 140 aa11.66□□□□□ -0.54
CPSF1-212ENST00000616140 NRN1Q9NPD7 142 aa11.66□□□□□ -0.54
CPSF1-212ENST00000616140 TRGV3P03979 118 aa11.65□□□□□ -0.54
CPSF1-212ENST00000616140 AREGP15514 252 aa11.65□□□□□ -0.54
CPSF1-212ENST00000616140 GNG5P63218 68 aa11.65□□□□□ -0.54
CPSF1-212ENST00000616140 MALRD1Q5VYJ5 2156 aa11.65□□□□□ -0.54
CPSF1-212ENST00000616140 IGHV1-18A0A0C4DH31 117 aa11.65□□□□□ -0.54
CPSF1-212ENST00000616140 CXCL1P09341 107 aa11.65□□□□□ -0.54
CPSF1-212ENST00000616140 CD24P25063 80 aa11.65□□□□□ -0.54
CPSF1-212ENST00000616140 SSBP4Q9BWG4 385 aaPredicted RBP11.65□□□□□ -0.54
CPSF1-212ENST00000616140 RAXQ9Y2V3 346 aa11.65□□□□□ -0.54
CPSF1-212ENST00000616140 TRAV9-1A0A075B6T8 112 aa11.65□□□□□ -0.54
CPSF1-212ENST00000616140 OR11H12B2RN74 326 aa11.65□□□□□ -0.54
CPSF1-212ENST00000616140 IGKV1-5P01602 117 aa11.65□□□□□ -0.54
CPSF1-212ENST00000616140 CEACAM1P13688 526 aa11.65□□□□□ -0.54
CPSF1-212ENST00000616140 CYB5R2Q6BCY4 276 aa11.65□□□□□ -0.54
CPSF1-212ENST00000616140 OR11H1Q8NG94 326 aa11.65□□□□□ -0.54
CPSF1-212ENST00000616140 OR11H2Q8NH07 326 aa11.65□□□□□ -0.54
CPSF1-212ENST00000616140 TEX38Q6PEX7 206 aa11.64□□□□□ -0.55
CPSF1-212ENST00000616140 PPP1R27Q86WC6 154 aa11.64□□□□□ -0.55
CPSF1-212ENST00000616140 KIR2DL4Q99706 377 aa11.64□□□□□ -0.55
CPSF1-212ENST00000616140 TMEM160Q9NX00 188 aa11.64□□□□□ -0.55
CPSF1-212ENST00000616140 A0A1W2PRE2 83 aa11.64□□□□□ -0.55
CPSF1-212ENST00000616140 SRRM5B3KS81 715 aa11.64□□□□□ -0.55
CPSF1-212ENST00000616140 LYNX1G3V0Z9 82 aa11.64□□□□□ -0.55
CPSF1-212ENST00000616140 UBE2CO00762 179 aa11.64□□□□□ -0.55
CPSF1-212ENST00000616140 LYNX1P0DP58 116 aa11.64□□□□□ -0.55
CPSF1-212ENST00000616140 HGFACQ04756 655 aa11.64□□□□□ -0.55
CPSF1-212ENST00000616140 FAM159AQ6UWV7 190 aa11.64□□□□□ -0.55
CPSF1-212ENST00000616140 DMRTA2Q96SC8 542 aa11.64□□□□□ -0.55
CPSF1-212ENST00000616140 PTPRDP23468 1912 aa11.64□□□□□ -0.55
CPSF1-212ENST00000616140 TRBV24-1A0A075B6N3 115 aa11.64□□□□□ -0.55
CPSF1-212ENST00000616140 IZUMO1RA6ND01 250 aa11.64□□□□□ -0.55
CPSF1-212ENST00000616140 IL18BPO95998 194 aa11.64□□□□□ -0.55
CPSF1-212ENST00000616140 GFI1BQ5VTD9 330 aa11.64□□□□□ -0.55
CPSF1-212ENST00000616140 TREML4Q6UXN2 200 aa11.64□□□□□ -0.55
CPSF1-212ENST00000616140 A1L4Q6 167 aa11.64□□□□□ -0.55
CPSF1-212ENST00000616140 C10orf55Q5SWW7 151 aa11.64□□□□□ -0.55
CPSF1-212ENST00000616140 HIST1H2BLQ99880 126 aa11.64□□□□□ -0.55
CPSF1-212ENST00000616140 CLDN16Q9Y5I7 305 aa11.64□□□□□ -0.55
CPSF1-212ENST00000616140 PCNX2A6NKB5 2137 aa11.63□□□□□ -0.55
CPSF1-212ENST00000616140 COX6CP09669 75 aa11.63□□□□□ -0.55
CPSF1-212ENST00000616140 ADMP35318 185 aa11.63□□□□□ -0.55
CPSF1-212ENST00000616140 PRCDQ00LT1 54 aa11.63□□□□□ -0.55
CPSF1-212ENST00000616140 KLRB1Q12918 225 aa11.63□□□□□ -0.55
CPSF1-212ENST00000616140 C1QL4Q86Z23 238 aa11.63□□□□□ -0.55
CPSF1-212ENST00000616140 CIARTQ8N365 385 aaPredicted RBP11.63□□□□□ -0.55
CPSF1-212ENST00000616140 PIMREGQ9BSJ6 248 aa11.63□□□□□ -0.55
CPSF1-212ENST00000616140 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP11.63□□□□□ -0.55
CPSF1-212ENST00000616140 C9JCJ5 164 aa11.63□□□□□ -0.55
CPSF1-212ENST00000616140 TMEM42Q69YG0 159 aa11.63□□□□□ -0.55
CPSF1-212ENST00000616140 OR10W1Q8NGF6 305 aa11.63□□□□□ -0.55
CPSF1-212ENST00000616140 ARPC1AQ92747 370 aa11.63□□□□□ -0.55
CPSF1-212ENST00000616140 NDUFAF3Q9BU61 184 aa11.63□□□□□ -0.55
CPSF1-212ENST00000616140 GGTLC1Q9BX51 225 aa11.63□□□□□ -0.55
CPSF1-212ENST00000616140 LILRA1O75019 489 aa11.63□□□□□ -0.55
CPSF1-212ENST00000616140 CA1P00915 261 aaPredicted RBP11.63□□□□□ -0.55
CPSF1-212ENST00000616140 ZNF56Q15929 161 aa11.63□□□□□ -0.55
CPSF1-212ENST00000616140 AMMECR1LQ6DCA0 310 aa11.62□□□□□ -0.55
CPSF1-212ENST00000616140 ERASQ7Z444 233 aa11.62□□□□□ -0.55
CPSF1-212ENST00000616140 FMC1Q96HJ9 113 aa11.62□□□□□ -0.55
CPSF1-212ENST00000616140 TMEM133Q9H2Q1 129 aa11.62□□□□□ -0.55
CPSF1-212ENST00000616140 OSTCQ9NRP0 149 aa11.62□□□□□ -0.55
CPSF1-212ENST00000616140 PMCHL2Q9BQD1 86 aa11.62□□□□□ -0.55
CPSF1-212ENST00000616140 RPUSD1Q9UJJ7 312 aaKnown RBP11.62□□□□□ -0.55
CPSF1-212ENST00000616140 SIP14410 1827 aa11.62□□□□□ -0.55
CPSF1-212ENST00000616140 PDLIM4P50479 330 aa11.62□□□□□ -0.55
CPSF1-212ENST00000616140 Q0VFX4 171 aa11.62□□□□□ -0.55
CPSF1-212ENST00000616140 JOSD1Q15040 202 aaPredicted RBP11.62□□□□□ -0.55
CPSF1-212ENST00000616140 SRSF7Q16629 238 aaKnown RBP eCLIP11.62□□□□□ -0.55
CPSF1-212ENST00000616140 SOX21Q9Y651 276 aaPredicted RBP11.62□□□□□ -0.55
CPSF1-212ENST00000616140 TRAV1-1A0A0B4J248 108 aa11.61□□□□□ -0.55
CPSF1-212ENST00000616140 CD59P13987 128 aa11.61□□□□□ -0.55
CPSF1-212ENST00000616140 DMRTA1Q5VZB9 504 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 93.6 ms