RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 ANKRD55Q3KP44 614 aa14.69□□□□□ -0.06
UPF1-212ENST00000601689 CD300EQ496F6 205 aaPredicted RBP14.69□□□□□ -0.06
UPF1-212ENST00000601689 C2orf83Q53S99 150 aa14.69□□□□□ -0.06
UPF1-212ENST00000601689 RBPMS2Q6ZRY4 209 aaKnown RBP14.69□□□□□ -0.06
UPF1-212ENST00000601689 DTD1Q8TEA8 209 aa14.69□□□□□ -0.06
UPF1-212ENST00000601689 TMEM190Q8WZ59 177 aa14.69□□□□□ -0.06
UPF1-212ENST00000601689 GINS3Q9BRX5 216 aa14.69□□□□□ -0.06
UPF1-212ENST00000601689 HSPB7Q9UBY9 170 aa14.69□□□□□ -0.06
UPF1-212ENST00000601689 TMEM213A2RRL7 107 aa14.68□□□□□ -0.06
UPF1-212ENST00000601689 C9orf170A2RU37 121 aa14.68□□□□□ -0.06
UPF1-212ENST00000601689 C15orf62A8K5M9 175 aa14.68□□□□□ -0.06
UPF1-212ENST00000601689 FAM90A26D6RGX4 464 aa14.68□□□□□ -0.06
UPF1-212ENST00000601689 K7EMT4 169 aa14.68□□□□□ -0.06
UPF1-212ENST00000601689 CTSGP08311 255 aa14.68□□□□□ -0.06
UPF1-212ENST00000601689 HOXB5P09067 269 aa14.68□□□□□ -0.06
UPF1-212ENST00000601689 NHLRC4P0CG21 123 aaPredicted RBP14.68□□□□□ -0.06
UPF1-212ENST00000601689 SLC25A4P12235 298 aa14.68□□□□□ -0.06
UPF1-212ENST00000601689 GUCA2BQ16661 112 aa14.68□□□□□ -0.06
UPF1-212ENST00000601689 TM4SF20Q53R12 229 aa14.68□□□□□ -0.06
UPF1-212ENST00000601689 LAMTOR1Q6IAA8 161 aa14.68□□□□□ -0.06
UPF1-212ENST00000601689 UNQ9165/PRO28630Q6UXU0 137 aa14.68□□□□□ -0.06
UPF1-212ENST00000601689 IGHV3-48P01763 117 aa14.67□□□□□ -0.06
UPF1-212ENST00000601689 RAB11AP62491 216 aa14.67□□□□□ -0.06
UPF1-212ENST00000601689 BSXQ3C1V8 233 aa14.67□□□□□ -0.06
UPF1-212ENST00000601689 LYG2Q86SG7 212 aa14.67□□□□□ -0.06
UPF1-212ENST00000601689 CIB3Q96Q77 187 aaPredicted RBP14.67□□□□□ -0.06
UPF1-212ENST00000601689 CHRDL1Q9BU40 450 aa14.67□□□□□ -0.06
UPF1-212ENST00000601689 TRAV25A0A0B4J276 109 aa14.66□□□□□ -0.06
UPF1-212ENST00000601689 FAM240BA0A1B0GVZ2 78 aa14.66□□□□□ -0.06
UPF1-212ENST00000601689 IFNA4P05014 189 aa14.66□□□□□ -0.06
UPF1-212ENST00000601689 DHRS2Q13268 280 aa14.66□□□□□ -0.06
UPF1-212ENST00000601689 PVRIGQ6DKI7 326 aa14.66□□□□□ -0.06
UPF1-212ENST00000601689 ZNF600Q6ZNG1 722 aa14.66□□□□□ -0.06
UPF1-212ENST00000601689 SLC16A13Q7RTY0 426 aa14.66□□□□□ -0.06
UPF1-212ENST00000601689 OR4X1Q8NH49 305 aa14.66□□□□□ -0.06
UPF1-212ENST00000601689 C20orf85Q9H1P6 137 aa14.66□□□□□ -0.06
UPF1-212ENST00000601689 RBKSQ9H477 322 aa14.66□□□□□ -0.06
UPF1-212ENST00000601689 TUBA4BQ9H853 241 aa14.66□□□□□ -0.06
UPF1-212ENST00000601689 FLVCR2Q9UPI3 526 aa14.66□□□□□ -0.06
UPF1-212ENST00000601689 F8W735 103 aaPredicted RBP14.65□□□□□ -0.06
UPF1-212ENST00000601689 WRBO00258 174 aa14.65□□□□□ -0.06
UPF1-212ENST00000601689 CLN5O75503 358 aa14.65□□□□□ -0.06
UPF1-212ENST00000601689 TCRBP04435 133 aa14.65□□□□□ -0.06
UPF1-212ENST00000601689 C8orf88P0DMB2 117 aa14.65□□□□□ -0.06
UPF1-212ENST00000601689 ADMP35318 185 aa14.65□□□□□ -0.06
UPF1-212ENST00000601689 BTNL8Q6UX41 500 aa14.65□□□□□ -0.06
UPF1-212ENST00000601689 CACNG8Q8WXS5 425 aa14.65□□□□□ -0.06
UPF1-212ENST00000601689 TRAV14DV4A0A0A6YYC5 116 aa14.64□□□□□ -0.07
UPF1-212ENST00000601689 PLA2G10O15496 165 aa14.64□□□□□ -0.07
UPF1-212ENST00000601689 TMEM50AO95807 157 aa14.64□□□□□ -0.07
UPF1-212ENST00000601689 ANXA7P20073 488 aaKnown RBP14.64□□□□□ -0.07
UPF1-212ENST00000601689 BTCP35070 178 aa14.64□□□□□ -0.07
UPF1-212ENST00000601689 GGNBP1Q5YKI7 109 aa14.64□□□□□ -0.07
UPF1-212ENST00000601689 NARS2Q96I59 477 aaKnown RBP14.64□□□□□ -0.07
UPF1-212ENST00000601689 PITX3O75364 302 aa14.63□□□□□ -0.07
UPF1-212ENST00000601689 CD5P06127 495 aa14.63□□□□□ -0.07
UPF1-212ENST00000601689 CD81P60033 236 aa14.63□□□□□ -0.07
UPF1-212ENST00000601689 ADAMTSL5Q6ZMM2 481 aa14.63□□□□□ -0.07
UPF1-212ENST00000601689 MLXQ9UH92 298 aa14.63□□□□□ -0.07
UPF1-212ENST00000601689 PAIP2BQ9ULR5 123 aaKnown RBP14.63□□□□□ -0.07
UPF1-212ENST00000601689 IZUMO1RA6ND01 250 aa14.62□□□□□ -0.07
UPF1-212ENST00000601689 SYNGR2O43760 224 aa14.62□□□□□ -0.07
UPF1-212ENST00000601689 TMEM116Q8NCL8 245 aa14.62□□□□□ -0.07
UPF1-212ENST00000601689 OR52B4Q8NGK2 314 aa14.62□□□□□ -0.07
UPF1-212ENST00000601689 OR1S2Q8NGQ3 325 aa14.62□□□□□ -0.07
UPF1-212ENST00000601689 OR10C1Q96KK4 312 aa14.62□□□□□ -0.07
UPF1-212ENST00000601689 NEURL2Q9BR09 285 aa14.62□□□□□ -0.07
UPF1-212ENST00000601689 TMEM231Q9H6L2 316 aa14.62□□□□□ -0.07
UPF1-212ENST00000601689 TGP01266 2768 aa14.62□□□□□ -0.07
UPF1-212ENST00000601689 TRAV6A0A075B6T7 132 aa14.61□□□□□ -0.07
UPF1-212ENST00000601689 A0A1W2PS18 150 aa14.61□□□□□ -0.07
UPF1-212ENST00000601689 ZNF207O43670 478 aaKnown RBP14.61□□□□□ -0.07
UPF1-212ENST00000601689 SCAF4O95104 1147 aaKnown RBP14.61□□□□□ -0.07
UPF1-212ENST00000601689 IGHV4-30-4P0DP06 118 aa14.61□□□□□ -0.07
UPF1-212ENST00000601689 TMEM61Q8N0U2 210 aa14.61□□□□□ -0.07
UPF1-212ENST00000601689 ENKURQ8TC29 256 aa14.61□□□□□ -0.07
UPF1-212ENST00000601689 Q8WTZ3 238 aa14.61□□□□□ -0.07
UPF1-212ENST00000601689 WDR89Q96FK6 387 aaPredicted RBP14.61□□□□□ -0.07
UPF1-212ENST00000601689 SLC35E1Q96K37 410 aa14.61□□□□□ -0.07
UPF1-212ENST00000601689 SPAG8Q99932 426 aaPredicted RBP14.61□□□□□ -0.07
UPF1-212ENST00000601689 FNDC4Q9H6D8 234 aaPredicted RBP14.61□□□□□ -0.07
UPF1-212ENST00000601689 ZMAT4Q9H898 229 aa14.61□□□□□ -0.07
UPF1-212ENST00000601689 NUDT15Q9NV35 164 aa14.61□□□□□ -0.07
UPF1-212ENST00000601689 PUS1Q9Y606 427 aaKnown RBP eCLIP14.61□□□□□ -0.07
UPF1-212ENST00000601689 IGHV3OR16-8A0A075B7F1 116 aa14.6□□□□□ -0.07
UPF1-212ENST00000601689 IGHV7-4-1A0A0J9YVY3 117 aa14.6□□□□□ -0.07
UPF1-212ENST00000601689 ZNF785A8K8V0 405 aa14.6□□□□□ -0.07
UPF1-212ENST00000601689 A8MZ25 164 aa14.6□□□□□ -0.07
UPF1-212ENST00000601689 UPK1BO75841 260 aa14.6□□□□□ -0.07
UPF1-212ENST00000601689 H2AFB2P0C5Z0 115 aa14.6□□□□□ -0.07
UPF1-212ENST00000601689 FRMD6-AS1P0C7T7 363 aa14.6□□□□□ -0.07
UPF1-212ENST00000601689 EDN2P20800 178 aa14.6□□□□□ -0.07
UPF1-212ENST00000601689 GPX4P36969 197 aaPredicted RBP14.6□□□□□ -0.07
UPF1-212ENST00000601689 NKX2-1P43699 371 aaPredicted RBP14.6□□□□□ -0.07
UPF1-212ENST00000601689 RND2P52198 227 aa14.6□□□□□ -0.07
UPF1-212ENST00000601689 PAFAH1B2P68402 229 aa14.6□□□□□ -0.07
UPF1-212ENST00000601689 MLANAQ16655 118 aa14.6□□□□□ -0.07
UPF1-212ENST00000601689 TOMM20LQ6UXN7 152 aa14.6□□□□□ -0.07
UPF1-212ENST00000601689 Q8N1Y9 231 aa14.6□□□□□ -0.07
UPF1-212ENST00000601689 MITD1Q8WV92 249 aa14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 126.2 ms