RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 Q8N1Y9 231 aa12.22□□□□□ -0.45
LSM4-206ENST00000600289 UBAC2Q8NBM4 344 aa12.22□□□□□ -0.45
LSM4-206ENST00000600289 SLC24A4Q8NFF2 622 aa12.22□□□□□ -0.45
LSM4-206ENST00000600289 PINX1Q96BK5 328 aaKnown RBP12.22□□□□□ -0.45
LSM4-206ENST00000600289 HEYLQ9NQ87 328 aaPredicted RBP12.22□□□□□ -0.45
LSM4-206ENST00000600289 DAZ1Q9NQZ3 744 aaKnown RBP12.22□□□□□ -0.45
LSM4-206ENST00000600289 PCLOQ9Y6V0 5065 aa12.21□□□□□ -0.45
LSM4-206ENST00000600289 C9orf170A2RU37 121 aa12.21□□□□□ -0.45
LSM4-206ENST00000600289 C15orf62A8K5M9 175 aa12.21□□□□□ -0.45
LSM4-206ENST00000600289 CEBPZOSA8MTT3 80 aa12.21□□□□□ -0.45
LSM4-206ENST00000600289 A8MZ25 164 aa12.21□□□□□ -0.45
LSM4-206ENST00000600289 FAM90A26D6RGX4 464 aa12.21□□□□□ -0.45
LSM4-206ENST00000600289 NUPL2O15504 423 aaKnown RBP12.21□□□□□ -0.45
LSM4-206ENST00000600289 LYRM1O43325 122 aa12.21□□□□□ -0.45
LSM4-206ENST00000600289 ATP5IP56385 69 aaPredicted RBP12.21□□□□□ -0.45
LSM4-206ENST00000600289 CD300EQ496F6 205 aaPredicted RBP12.21□□□□□ -0.45
LSM4-206ENST00000600289 NOXA1Q86UR1 476 aa12.21□□□□□ -0.45
LSM4-206ENST00000600289 DUSP18Q8NEJ0 188 aa12.21□□□□□ -0.45
LSM4-206ENST00000600289 RNASEH2CQ8TDP1 164 aaKnown RBP12.21□□□□□ -0.45
LSM4-206ENST00000600289 HIPK2Q9H2X6 1198 aa12.21□□□□□ -0.45
LSM4-206ENST00000600289 LINC00854A0A1B0GVQ3 168 aa12.2□□□□□ -0.46
LSM4-206ENST00000600289 IZUMO1RA6ND01 250 aa12.2□□□□□ -0.46
LSM4-206ENST00000600289 GNG7O60262 68 aa12.2□□□□□ -0.46
LSM4-206ENST00000600289 OR4E1P0C645 316 aa12.2□□□□□ -0.46
LSM4-206ENST00000600289 CD69Q07108 199 aa12.2□□□□□ -0.46
LSM4-206ENST00000600289 DHRS2Q13268 280 aa12.2□□□□□ -0.46
LSM4-206ENST00000600289 TM4SF20Q53R12 229 aa12.2□□□□□ -0.46
LSM4-206ENST00000600289 UXS1Q8NBZ7 420 aa12.2□□□□□ -0.46
LSM4-206ENST00000600289 OR4X1Q8NH49 305 aa12.2□□□□□ -0.46
LSM4-206ENST00000600289 OR1S1Q8NH92 325 aa12.2□□□□□ -0.46
LSM4-206ENST00000600289 DTD1Q8TEA8 209 aa12.2□□□□□ -0.46
LSM4-206ENST00000600289 TMEM170AQ8WVE7 144 aa12.2□□□□□ -0.46
LSM4-206ENST00000600289 CACNG8Q8WXS5 425 aa12.2□□□□□ -0.46
LSM4-206ENST00000600289 OR10C1Q96KK4 312 aa12.2□□□□□ -0.46
LSM4-206ENST00000600289 FNDC4Q9H6D8 234 aaPredicted RBP12.2□□□□□ -0.46
LSM4-206ENST00000600289 MLXQ9UH92 298 aa12.2□□□□□ -0.46
LSM4-206ENST00000600289 FLVCR2Q9UPI3 526 aa12.2□□□□□ -0.46
LSM4-206ENST00000600289 U3KQ87 197 aa12.2□□□□□ -0.46
LSM4-206ENST00000600289 TRAV25A0A0B4J276 109 aa12.19□□□□□ -0.46
LSM4-206ENST00000600289 IGHV3-35A0A0C4DH35 117 aa12.19□□□□□ -0.46
LSM4-206ENST00000600289 RPS10-NUDT3A0A1W2PQS6 291 aa12.19□□□□□ -0.46
LSM4-206ENST00000600289 ZNF785A8K8V0 405 aa12.19□□□□□ -0.46
LSM4-206ENST00000600289 NHLRC4P0CG21 123 aaPredicted RBP12.19□□□□□ -0.46
LSM4-206ENST00000600289 NPY1RP25929 384 aa12.19□□□□□ -0.46
LSM4-206ENST00000600289 OPRK1P41145 380 aa12.19□□□□□ -0.46
LSM4-206ENST00000600289 LYG2Q86SG7 212 aa12.19□□□□□ -0.46
LSM4-206ENST00000600289 GTSCR1Q86UQ5 136 aa12.19□□□□□ -0.46
LSM4-206ENST00000600289 WDR12Q9GZL7 423 aaKnown RBP12.19□□□□□ -0.46
LSM4-206ENST00000600289 C20orf85Q9H1P6 137 aa12.19□□□□□ -0.46
LSM4-206ENST00000600289 RBKSQ9H477 322 aa12.19□□□□□ -0.46
LSM4-206ENST00000600289 HUWE1Q7Z6Z7 4374 aaKnown RBP12.18□□□□□ -0.46
LSM4-206ENST00000600289 STAB2Q8WWQ8 2551 aa12.18□□□□□ -0.46
LSM4-206ENST00000600289 CLN5O75503 358 aa12.18□□□□□ -0.46
LSM4-206ENST00000600289 TMEM50AO95807 157 aa12.18□□□□□ -0.46
LSM4-206ENST00000600289 IGHV3-48P01763 117 aa12.18□□□□□ -0.46
LSM4-206ENST00000600289 SLC25A4P12235 298 aa12.18□□□□□ -0.46
LSM4-206ENST00000600289 COQ8AQ8NI60 647 aa12.18□□□□□ -0.46
LSM4-206ENST00000600289 SCGB2A1O75556 95 aa12.17□□□□□ -0.46
LSM4-206ENST00000600289 NXPH3O95157 252 aa12.17□□□□□ -0.46
LSM4-206ENST00000600289 ANXA7P20073 488 aaKnown RBP12.17□□□□□ -0.46
LSM4-206ENST00000600289 ZNF846Q147U1 533 aa12.17□□□□□ -0.46
LSM4-206ENST00000600289 GGNBP1Q5YKI7 109 aa12.17□□□□□ -0.46
LSM4-206ENST00000600289 ETFRF1Q6IPR1 90 aa12.17□□□□□ -0.46
LSM4-206ENST00000600289 BTNL8Q6UX41 500 aa12.17□□□□□ -0.46
LSM4-206ENST00000600289 ZNF600Q6ZNG1 722 aa12.17□□□□□ -0.46
LSM4-206ENST00000600289 TMEM61Q8N0U2 210 aa12.17□□□□□ -0.46
LSM4-206ENST00000600289 C19orf73Q9NVV2 129 aa12.17□□□□□ -0.46
LSM4-206ENST00000600289 MRPL36Q9P0J6 103 aaKnown RBP12.17□□□□□ -0.46
LSM4-206ENST00000600289 HERC2O95714 4834 aa12.17□□□□□ -0.46
LSM4-206ENST00000600289 TRAV30A0A087WSZ9 112 aa12.16□□□□□ -0.46
LSM4-206ENST00000600289 C3orf84H3BNL1 204 aa12.16□□□□□ -0.46
LSM4-206ENST00000600289 MED6O75586 246 aa12.16□□□□□ -0.46
LSM4-206ENST00000600289 TCRBP04435 133 aa12.16□□□□□ -0.46
LSM4-206ENST00000600289 HOXB5P09067 269 aa12.16□□□□□ -0.46
LSM4-206ENST00000600289 IGHV4-30-4P0DP06 118 aa12.16□□□□□ -0.46
LSM4-206ENST00000600289 ASAH1Q13510 395 aa12.16□□□□□ -0.46
LSM4-206ENST00000600289 C4orf46Q504U0 113 aa12.16□□□□□ -0.46
LSM4-206ENST00000600289 TMEM116Q8NCL8 245 aa12.16□□□□□ -0.46
LSM4-206ENST00000600289 MITD1Q8WV92 249 aa12.16□□□□□ -0.46
LSM4-206ENST00000600289 WDR89Q96FK6 387 aaPredicted RBP12.16□□□□□ -0.46
LSM4-206ENST00000600289 ZFAND3Q9H8U3 227 aa12.16□□□□□ -0.46
LSM4-206ENST00000600289 IGHV7-4-1A0A0J9YVY3 117 aa12.15□□□□□ -0.46
LSM4-206ENST00000600289 IFNA10P01566 189 aa12.15□□□□□ -0.46
LSM4-206ENST00000600289 FRMD6-AS1P0C7T7 363 aa12.15□□□□□ -0.46
LSM4-206ENST00000600289 PRSS54Q6PEW0 395 aa12.15□□□□□ -0.46
LSM4-206ENST00000600289 TOMM20LQ6UXN7 152 aa12.15□□□□□ -0.46
LSM4-206ENST00000600289 CIB3Q96Q77 187 aaPredicted RBP12.15□□□□□ -0.46
LSM4-206ENST00000600289 GINS3Q9BRX5 216 aa12.15□□□□□ -0.46
LSM4-206ENST00000600289 C20orf24Q9BUV8 137 aa12.15□□□□□ -0.46
LSM4-206ENST00000600289 SMPXQ9UHP9 88 aa12.15□□□□□ -0.46
LSM4-206ENST00000600289 TBC1D24Q9ULP9 559 aa12.15□□□□□ -0.46
LSM4-206ENST00000600289 ADAP1O75689 374 aa12.14□□□□□ -0.47
LSM4-206ENST00000600289 UPK1BO75841 260 aa12.14□□□□□ -0.47
LSM4-206ENST00000600289 CD81P60033 236 aa12.14□□□□□ -0.47
LSM4-206ENST00000600289 MLANAQ16655 118 aa12.14□□□□□ -0.47
LSM4-206ENST00000600289 OR1S2Q8NGQ3 325 aa12.14□□□□□ -0.47
LSM4-206ENST00000600289 SPAG8Q99932 426 aaPredicted RBP12.14□□□□□ -0.47
LSM4-206ENST00000600289 NEURL2Q9BR09 285 aa12.14□□□□□ -0.47
LSM4-206ENST00000600289 TRAV14DV4A0A0A6YYC5 116 aa12.13□□□□□ -0.47
LSM4-206ENST00000600289 TSPAN4O14817 238 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms